Debugging slow CGIs
From genomewiki
Revision as of 22:07, 22 September 2023 by Max (talk | contribs) (Created page with "See see Debugging This page is a collection of considerations and tips for troubleshooting slow CGI response, targeted toward engineers working on the Browser. * Does the problem occur on mirrors? If yes, it's unlikely to be hgnfs1. * Are the trash cleaners running? If not, disk slowness is expected because the trash/ directory quickly fills up with junk, and the file system struggles to work around having so many files in a single directory. * Does the problem als...")
See see Debugging
This page is a collection of considerations and tips for troubleshooting slow CGI response, targeted toward engineers working on the Browser.
- Does the problem occur on mirrors? If yes, it's unlikely to be hgnfs1.
- Are the trash cleaners running? If not, disk slowness is expected because the trash/ directory quickly fills up with junk, and the file system struggles to work around having so many files in a single directory.
- Does the problem also occur on hgwdev? If so, debugging is usually easier.
- If you have a query string for the CGI (like hgTracks) that you know will demonstrate the problem, try runnning "gdb --args hgTracks <querystring>" a few times, ctrl-x and "bt" to get the backtrace. That can help you track down where the CGI is getting stuck.
- If the CGI is exceptionally long-running and you're having trouble reproducing the issue on the command-line, you can attempt to attach to an actively running process (i.e. one owned by apache) with gdb. Note that this requires sudo privileges for gdb. First, find the process id of the problematic CGI (probably using top or something similar). Next, "sudo gdb <cgi>". Sudo is needed because the goal is to attach to a process owned by apache, and normal users don't have permission to do that. Third, in gdb run "attach <pid>". This will interrupt the running CGI and set you up with its active callstack. From there you can run "bt" to get a backtrace and find out where you are, and then go from there.
