Ensembl QA: Difference between revisions

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There are periodic updates to all Ensembl Genes tracks in all dbs.
This page is no longer maintained.
 
*A good script to run that checks many things is checkEnsembl.sh.
**This script doesn't even seem to be isntalled for me. Maybe it is worth investigating?
 
*An even better script (in that it runs) is qaEnsGenes.csh
**Run it '''before''' you push to beta, as it compares dev to beta. You'll lose that comparison if you push too soon. Not that I ever did that.
 
*All Ensembl builds are documented in the single file:
    src/hg/makeDb/doc/makeEnsembl.txt
 
*You can find all ensembl gene builds in:
    /hive/data/genomes/<db>/bed/ensGene.NN/
:where NN is the ensembl version number.
 
*To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
**Basically, lines from trackVersion need to be copied over into the different hgFixed dbs as you go along.
***You can also manipulate the dates so the current version says 'current'. However, that does not seem to be a rule. Look in hgFixed. You'll see.
 
 
[[Category:Browser QA tracks]]

Latest revision as of 19:32, 10 March 2011

This page is no longer maintained.