Ensembl QA: Difference between revisions
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Marygoldman (talk | contribs) (removed reference to script that isn't useful. Tidied up language.) |
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There are periodic updates to all Ensembl Genes tracks in all dbs. | There are periodic updates to all Ensembl Genes tracks in all dbs. | ||
* | *Run qaEnsGenes.csh | ||
**Run it '''before''' you push to beta, as it compares dev to beta. You'll lose that comparison if you push too soon. | |||
**Run it '''before''' you push to beta, as it compares dev to beta. You'll lose that comparison if you push too soon | |||
*All Ensembl builds are documented in the single file: | *All Ensembl builds are documented in the single file: | ||
| Line 15: | Line 12: | ||
*To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database | *To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database | ||
**Basically, lines from trackVersion need to be copied over into the | **Basically, lines from trackVersion need to be copied over into the hgFixed database on beta and the RR. Do this as you push the tables along. | ||
**You can also manipulate the dates so the current version says 'current'. However, that does not seem to be a rule. | |||
[[Category:Browser QA tracks]] | [[Category:Browser QA tracks]][[Category:Browser QA]] | ||
Revision as of 17:32, 26 July 2010
There are periodic updates to all Ensembl Genes tracks in all dbs.
- Run qaEnsGenes.csh
- Run it before you push to beta, as it compares dev to beta. You'll lose that comparison if you push too soon.
- All Ensembl builds are documented in the single file:
src/hg/makeDb/doc/makeEnsembl.txt
- You can find all ensembl gene builds in:
/hive/data/genomes/<db>/bed/ensGene.NN/
- where NN is the ensembl version number.
- To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
- Basically, lines from trackVersion need to be copied over into the hgFixed database on beta and the RR. Do this as you push the tables along.
- You can also manipulate the dates so the current version says 'current'. However, that does not seem to be a rule.
