Fr3 conservation lastz parameters

From genomewiki
Revision as of 19:03, 2 December 2011 by Hiram (talk | contribs) (initial contents)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

See Also


The default
scoring matrix is:
  The HoxD55
scoring matrix is:
 The human-chimp.v2
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

 
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

 
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

O=600 E=150

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of fr3
matched
(chainLink table)
% of query
matched
(chainLinkFr3)
Tetraodon tetNig2 no5030003000HoxD55.q 9400lastz3020004001 2011-12-0170.912% 80.674%
Nile tilapia oreNil1 no5030003000HoxD55.q 9400lastz3020004001 2011-12-0257.240% 30.736%
Stickleback gasAcu1 no5030003000HoxD55.q 9400lastz3020004001 in progressin progress N/A
Medaka oryLat2 no5030003000HoxD55.q 9400lastz3020004001 2011-12-0243.863% 25.905%
Zebrafish danRer7 no5030003000HoxD55.q 9400lastz3020004001 2011-12-0222.823% 7.365%