Frequently asked mailing list questions: Difference between revisions

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(added link to seattleSeqAnnotation)
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''Questions about SNPs?''
''Questions about SNPs?''
*[http://lists.soe.ucsc.edu/pipermail/genome/2009-September/020019.html Angie SNP mega-answer ]
*[http://lists.soe.ucsc.edu/pipermail/genome/2009-September/020019.html Angie SNP mega-answer ]
''Instructions for downloading jksrc''
*[http://lists.soe.ucsc.edu/pipermail/genome/2010-September/023598.html http://lists.soe.ucsc.edu/pipermail/genome/2010-September/023598.html]


==Genome-Mirror==
==Genome-Mirror==

Revision as of 04:52, 16 November 2010

This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions.

Genome

If a user is looking for human or mouse genome updates, point them to:

To report errors in the human or mouse assemblies:

For users looking for help identifying effects of their novel SNPs, send them to (thanks Angie):

I have a list of Gene Symbols and I would like to get corresponding sequences for them.

Sharing custom tracks

Help me create a Custom Track

Is there a size limit for custom tracks?

How do I find non-protein-coding genes?

I have a list of identifiers, how do I find the coordinates?

Format of chain, chainLink and net tables

How do I get a table of restriction enzymes?

Note that the utility findCutters is better than oligoMatch: oligoMatch has no good way of finding AsuI (G'GnC_C). It's possible but it would need to be run four times: GGACC, GGCCC, GGGCC, GGTCC and the output combined. findCutters does it all in one command.

Go

How do I find orthologous genes (using TransMap)

How do I find telomeres and centromeres?


Questions about SNPs?

Instructions for downloading jksrc

Genome-Mirror