GalGal6 77-way conservation lastz parameters
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See Also
- Chicken 77-way GalGal6 77-way Genome size statistics
- Chicken 77-way GalGal6 77-way conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of galGal6 matched (chainLink table) |
% of query matched (chainLinkGalGal6) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Turkey melGal5 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 94.495% | 92.491% |
| Japanese quail cotJap2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-26 | 90.071% | 96.366% |
| Golden eagle aquChr2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 87.687% | 78.786% |
| Bald eagle halLeu1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 86.923% | 78.856% |
| Crested ibis nipNip1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 86.903% | 78.539% |
| Emperor penguin aptFor1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 86.834% | 77.790% |
| Peregrine falcon falPer1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 86.500% | 79.824% |
| Saker falcon falChe1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 86.342% | 79.770% |
| Killdeer chaVoc2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 86.267% | 78.316% |
| Adelie penguin pygAde1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 85.892% | 77.561% |
| Little egret egrGar1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 85.589% | 77.936% |
| Mallard duck anaPla1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 85.509% | 83.814% |
| Dalmatian pelican pelCri1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 85.344% | 77.377% |
| Northern fulmar fulGla1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 85.332% | 78.234% |
| Red-legged seriema carCri1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 85.094% | 78.856% |
| Cuckoo roller lepDis1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 85.021% | 78.924% |
| White-tailed eagle halAlb1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 84.997% | 78.352% |
| American flamingo phoRub1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 84.793% | 78.057% |
| Red-throated loon gavSte1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 84.717% | 78.429% |
| Crowned crain balPav1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 84.687% | 78.619% |
| Hoatzin opiHoa1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 84.579% | 78.069% |
| White-tailed tropicbird phaLep1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 84.519% | 78.068% |
| Red crested turaco tauEry1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 84.485% | 77.102% |
| Great cormorant phaCar1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 84.182% | 78.405% |
| Barn owl tytAlb1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 84.122% | 79.540% |
| Chuck-will's-widow capCar1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 83.573% | 77.901% |
| Common cuckoo cucCan1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 83.150% | 78.921% |
| Rock pigeon colLiv1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 83.073% | 79.480% |
| Houbara bustard chlUnd1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 83.041% | 78.986% |
| Brown roatelo mesUni1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 82.649% | 79.029% |
| Yellow-throated sandgrouse pteGut1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 82.523% | 79.317% |
| Sunbittern eurHel1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 82.426% | 78.684% |
| Ostrich strCam1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 82.389% | 74.035% |
| Budgerigar melUnd1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 81.694% | 78.351% |
| Northern carmine bee-eater merNub1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 81.018% | 79.394% |
| Bar tailed trogon apaVit1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 81.010% | 79.322% |
| Speckled mousebird colStr1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 80.987% | 78.528% |
| American crow corBra1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 80.978% | 80.022% |
| Rhinoceros hornbill bucRhi1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 80.812% | 78.727% |
| Tibetan ground jay pseHum1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 80.622% | 80.898% |
| Parrot amaVit1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 80.577% | 77.539% |
| Hooded crow corCor1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 80.574% | 80.730% |
| Canary serCan1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 79.903% | 74.870% |
| Anna's hummingbird calAnn1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 79.733% | 79.955% |
| Rifleman acaChl1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 79.489% | 79.366% |
| Collared flycatcher ficAlb2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 79.354% | 75.638% |
| Medium ground finch geoFor1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-19 | 79.299% | 79.439% |
| White-throated sparrow zonAlb1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-16 | 78.645% | 79.381% |
| Scarlet macaw araMac1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 76.180% | 77.878% |
| Downy woodpecker picPub1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 74.258% | 69.321% |
| Zebra finch taeGut2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 73.989% | 73.358% |
| White throated tinamou tinGut2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 73.577% | 75.473% |
| Painted turtle chrPic2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 51.724% | 33.105% |
| Green seaturtle cheMyd1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-18 | 51.019% | 33.557% |
| Chinese alligator allSin1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 46.056% | 23.607% |
| American alligator allMis1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 44.801% | 24.041% |
| Chinese softshell turtle pelSin1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 41.985% | 25.358% |
| Spiny softshell turtle apaSpi1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 38.375% | 25.398% |
| Burmese python pytBiv1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 15.806% | 11.426% |
| Lizard anoCar2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 14.527% | 8.505% |
| Garter snake thaSir1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 11.754% | 9.922% |
| X. tropicalis xenTro9 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 8.102% | 6.961% |
| African clawed frog xenLae2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 7.927% | 5.220% |
| Tibetan frog nanPar1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 7.564% | 4.273% |
| Human hg38 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-12 | 11.459% | 4.977% |
| Mouse mm10 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-12 | 8.388% | 3.813% |
| Zebrafish danRer11 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 6.352% | 5.913% |
| Japanese eel angJap1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 5.408% | 7.077% |
| Nile tilapia oreNil3 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 4.925% | 6.828% |
| Stickleback gasAcu1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 4.623% | 12.925% |
| Medaka oryLat2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 4.565% | 7.741% |
| Zebra mbuna mayZeb1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 4.539% | 7.874% |
| Tetraodon tetNig2 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-21 | 4.148% | 15.780% |
| Fugu fr3 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 4.007% | 13.581% |
| Lamprey petMar3 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-17 | 3.658% | 4.837% |
| Arctic lamprey letCam1 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2018-10-20 | 3.335% | 4.611% |
