GalVar1 6-way Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src
ucsc
db name/
genome-preview
chrom
count
total
size
non-N
bases
N base
count
% masked common name/
src info
coverage N50
chrom.sizes
alignment type % of galVar1
matched
(chainLink table)
chain
minScore
chain
linearGap
01galVar1 179,514 3,187,660,5722,802,837,430 384,823,142% 38.66 Malayan flying lemur55X 245189 N/AN/A N/A N/A
02tupChi1 50,750 2,846,580,2352,706,389,135 140,191,100% 40.02 Chinese tree shrew80X 3670124 SyntenicNet53.211% 3000 medium
03tupBel1 150,851 3,660,774,9572,137,225,476 1,523,549,481% 20.43 Tree shrew2X 127888 RecipBest41.502% 3000 medium
04hg38 455 3,209,286,1053,049,315,783 159,970,322% 52.10 Human20X 145138636 SyntenicNet64.881% 3000 medium
05cavPor3 3,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea pig6.76X 27942054 SyntenicNet48.448% 3000 medium
06mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 SyntenicNet35.972% 3000 medium