Gene Set Summary Statistics: Difference between revisions

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<TABLE BORDER=1>
<TABLE BORDER=1>
<TR><TH>db</TH><TH>sum intron<BR>sizes</TH><TH>min intron<BR>size</TH><TH>max intron<BR>size</TH><TH>mean intron<BR>size</TH></TR>
<TR><TH>db</TH><TH>sum intron<BR>sizes</TH><TH>min intron<BR>size</TH><TH>max intron<BR>size</TH><TH>mean intron<BR>size</TH></TR>
<TR><TH>hg17</TH><TD ALIGN=RIGHT>2223220000</TD><TD ALIGN=RIGHT>6</TD><TD ALIGN=RIGHT>1096450</TD><TD ALIGN=RIGHT>6069</TD></TR>
<TR><TH>hg17</TH><TD ALIGN=RIGHT>2223224397</TD><TD ALIGN=RIGHT>6</TD><TD ALIGN=RIGHT>1096450</TD><TD ALIGN=RIGHT>6069</TD></TR>
<TR><TH>hg18</TH><TD ALIGN=RIGHT>2784920000</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1047320</TD><TD ALIGN=RIGHT>6023</TD></TR>
<TR><TH>hg18</TH><TD ALIGN=RIGHT>2784923600</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1047320</TD><TD ALIGN=RIGHT>6023</TD></TR>
<TR><TH>mm8</TH><TD ALIGN=RIGHT>1476080000</TD><TD ALIGN=RIGHT>9</TD><TD ALIGN=RIGHT>1347550</TD><TD ALIGN=RIGHT>5220</TD></TR>
<TR><TH>mm8</TH><TD ALIGN=RIGHT>1476081990</TD><TD ALIGN=RIGHT>9</TD><TD ALIGN=RIGHT>1347550</TD><TD ALIGN=RIGHT>5220</TD></TR>
<TR><TH>mm9</TH><TD ALIGN=RIGHT>2055500000</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1253430</TD><TD ALIGN=RIGHT>5589</TD></TR>
<TR><TH>mm9</TH><TD ALIGN=RIGHT>2055504784</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1253430</TD><TD ALIGN=RIGHT>5589</TD></TR>
</TABLE>
</TABLE>



Revision as of 19:21, 14 September 2007

gene sets measured

  • hg17 - knownGenes version 2
  • hg18 - knownGenes version 3
  • mm8 - knownGenes version 2
  • mm9 - knownGenes version 3

The min, max and mean measurements are per gene

summary of gene and exon counts

dbgene
count
total exon
count
min exon
count
max exon
count
mean exon
count
hg1739368405720114910
hg1856722519308128999
mm831863314628131310
mm94922041711416108

summary of exon size statistics

dbsum exon
sizes
min exon
size
max exon
size
mean exon
size
hg17106839720118172263
hg18146371091136861282
mm883159087417497264
mm9117671086129698282

summary of intron size statistics

dbsum intron
sizes
min intron
size
max intron
size
mean intron
size
hg172223224397610964506069
hg182784923600110473206023
mm81476081990913475505220
mm92055504784112534305589

Top five exon count genes

dbgene name (exon count)
hg17 NM_004543 (149) AF535142 (146) AF535142 (146) NM_033071 (146) AF495910 (146)
hg18 uc001yrq.1 (2899) uc002zvw.1 (322) uc002umr.1 (313) uc002stk.1 (217) uc002umt.1 (194)
mm8 NM_011652 (313) NM_028004 (192) NM_007738 (118) NM_134448 (99) DQ067088 (99)
mm9 uc007pgj.1 (610) uc008kfn.1 (313) uc008kfo.1 (192) uc008jqv.1 (157) uc009rrh.1 (118)