Genes in gtf or gff format: Revision history

4 October 2017

• curprev 16:2516:25, 4 October 2017‎ Chmalee talk contribs‎ 17,948 bytes +1‎ →‎The opposite direction, GTF to GenePred
• curprev 16:2416:24, 4 October 2017‎ Chmalee talk contribs‎ m 17,947 bytes +3,200‎ Adding a new section about going the other direction gtfToGenePred

14 August 2017

• curprev 19:5019:50, 14 August 2017‎ Brian Lee talk contribs‎ 14,747 bytes −2‎ →‎Mailing List Resources about GTF
• curprev 19:4919:49, 14 August 2017‎ Brian Lee talk contribs‎ 14,749 bytes +525‎ Adding some example connections to the MLQ where we have a lot of resources.

10 August 2017

• curprev 21:5121:51, 10 August 2017‎ Cath Tyner talk contribs‎ m 14,224 bytes +29‎ →‎Get a genePred file from UCSC MySQL public databases, then convert to GTF
• curprev 21:5021:50, 10 August 2017‎ Cath Tyner talk contribs‎ m 14,195 bytes −111‎ →‎Get a genePred file from UCSC MySQL public databases, then convert to GTF
• curprev 21:4921:49, 10 August 2017‎ Cath Tyner talk contribs‎ 14,306 bytes +397‎ →‎Get a genePred file from UCSC MySQL public databases, then convert to GTF
• curprev 21:4721:47, 10 August 2017‎ Cath Tyner talk contribs‎ 13,909 bytes +1,392‎ No edit summary

8 August 2017

• curprev 20:0720:07, 8 August 2017‎ Cath Tyner talk contribs‎ m 12,517 bytes −2‎ →‎Example to compare Table Browser GTF output with genePredToGtf utility output
• curprev 18:2918:29, 8 August 2017‎ Cath Tyner talk contribs‎ m 12,519 bytes +14‎ →‎Summary of limitations for Table Browser GTF output
• curprev 18:2818:28, 8 August 2017‎ Cath Tyner talk contribs‎ m 12,505 bytes −26‎ →‎Summary of limitations for Table Browser GTF output
• curprev 18:2618:26, 8 August 2017‎ Cath Tyner talk contribs‎ 12,531 bytes +464‎ No edit summary
• curprev 18:1718:17, 8 August 2017‎ Cath Tyner talk contribs‎ 12,067 bytes +4,446‎ Adding TB vs utility example

15 June 2017

• curprev 22:4022:40, 15 June 2017‎ Chmalee talk contribs‎ m 7,621 bytes +254‎ →‎Using kent commands with the public database server: adding note about matching gene_id and transcript_id when using knownGene table as input

17 March 2017

• curprev 21:3021:30, 17 March 2017‎ Brian Lee talk contribs‎ 7,367 bytes +35‎ →‎Use genePredToGtf with a downloaded genePred table: edit to suggest named subsection to enable link
• curprev 21:0221:02, 17 March 2017‎ Brian Lee talk contribs‎ 7,332 bytes +4‎ →‎Using Table Browser output as input for the genePredToGtf: correcting mention of GTF as input to genPredToGtf where it should be genPred
• curprev 20:3820:38, 17 March 2017‎ Cath Tyner talk contribs‎ 7,328 bytes −20‎ →‎Using Table Browser output as input for the genePredToGtf command line utility
• curprev 20:3820:38, 17 March 2017‎ Cath Tyner talk contribs‎ 7,348 bytes +83‎ No edit summary
• curprev 20:3720:37, 17 March 2017‎ Cath Tyner talk contribs‎ 7,265 bytes +2‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:3720:37, 17 March 2017‎ Cath Tyner talk contribs‎ 7,263 bytes +40‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:3620:36, 17 March 2017‎ Cath Tyner talk contribs‎ 7,223 bytes +286‎ →‎Bed format gene tracks (convert bed > genePred > GTF)
• curprev 20:3420:34, 17 March 2017‎ Cath Tyner talk contribs‎ 6,937 bytes −140‎ →‎Use genePredToGtf with a downloaded genePred table
• curprev 20:2120:21, 17 March 2017‎ Cath Tyner talk contribs‎ 7,077 bytes +27‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:2020:20, 17 March 2017‎ Cath Tyner talk contribs‎ 7,050 bytes −1‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:2020:20, 17 March 2017‎ Cath Tyner talk contribs‎ 7,051 bytes +85‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:1820:18, 17 March 2017‎ Cath Tyner talk contribs‎ 6,966 bytes 0‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:1520:15, 17 March 2017‎ Cath Tyner talk contribs‎ 6,966 bytes +118‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:1220:12, 17 March 2017‎ Cath Tyner talk contribs‎ 6,848 bytes +87‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 20:1120:11, 17 March 2017‎ Cath Tyner talk contribs‎ 6,761 bytes +786‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:4819:48, 17 March 2017‎ Cath Tyner talk contribs‎ 5,975 bytes +1‎ →‎Use genePredToGtf with a downloaded genePred table
• curprev 19:4819:48, 17 March 2017‎ Cath Tyner talk contribs‎ 5,974 bytes +6‎ →‎Use genePredToGtf with a downloaded genePred table
• curprev 19:4619:46, 17 March 2017‎ Cath Tyner talk contribs‎ 5,968 bytes −610‎ →‎Using kent commands with the public database server
• curprev 19:4619:46, 17 March 2017‎ Cath Tyner talk contribs‎ 6,578 bytes +927‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:4119:41, 17 March 2017‎ Cath Tyner talk contribs‎ 5,651 bytes −1‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:3319:33, 17 March 2017‎ Cath Tyner talk contribs‎ 5,652 bytes −4‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:3219:32, 17 March 2017‎ Cath Tyner talk contribs‎ 5,656 bytes +32‎ →‎Bed format gene tracks
• curprev 19:3119:31, 17 March 2017‎ Cath Tyner talk contribs‎ 5,624 bytes +22‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:2819:28, 17 March 2017‎ Cath Tyner talk contribs‎ 5,602 bytes +46‎ →‎Convert genePred to GTF with the genePredToGtf command line utility
• curprev 19:2619:26, 17 March 2017‎ Cath Tyner talk contribs‎ 5,556 bytes +2‎ →‎Use genePredToGtf with a downloaded genePred table
• curprev 19:2619:26, 17 March 2017‎ Cath Tyner talk contribs‎ 5,554 bytes +232‎ No edit summary
• curprev 19:1719:17, 17 March 2017‎ Cath Tyner talk contribs‎ 5,322 bytes +55‎ →‎text file dumps of gene tracks
• curprev 19:1619:16, 17 March 2017‎ Cath Tyner talk contribs‎ 5,267 bytes +2,276‎ No edit summary

23 July 2015

• curprev 15:4815:48, 23 July 2015‎ Jonathan Casper talk contribs‎ 2,991 bytes −1‎ →‎genePredToGtf

14 November 2013

• curprev 19:2619:26, 14 November 2013‎ Brian Lee talk contribs‎ 2,992 bytes +1‎ →‎genePredToGtf
• curprev 19:2519:25, 14 November 2013‎ Brian Lee talk contribs‎ 2,991 bytes +21‎ →‎genePredToGtf

13 December 2011

• curprev 17:2817:28, 13 December 2011‎ Hiram talk contribs‎ 2,970 bytes +531‎ adding bed example

16 August 2011

• curprev 16:2216:22, 16 August 2011‎ AngieHinrichs talk contribs‎ m 2,439 bytes +1‎ typo fix

26 July 2011

• curprev 18:1118:11, 26 July 2011‎ Hiram talk contribs‎ 2,438 bytes +31‎ note the .hg.conf is for public database usage
• curprev 18:0918:09, 26 July 2011‎ Hiram talk contribs‎ 2,407 bytes +438‎ note about knownGene extra columns

• curprev 17:0017:00, 26 July 2011‎ Hiram talk contribs‎ 1,969 bytes +1,969‎ initial contents