Genome size statistics: Difference between revisions

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(added caption for hg18 matched)
(fixup links to others)
 
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==see also==
==see also==


[[Hg18 44way alignment]]
<UL>
<LI>Human 44-way [[Hg18 44way alignment|Hg18 conservation alignment]]</LI>
<LI>Human 44-way [[Hg18 44way blastz parameters|Hg18 conservation blastz parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>


==statistics collected from UCSC 2bit files==
==statistics collected from UCSC 2bit files==
Line 13: Line 17:


==do not edit, automatically generated table==
==do not edit, automatically generated table==
<TABLE BORDER=1>
<TABLE BORDER=1>
<TR><TH>order<BR>count</TH>
<TR><TH>order<BR>count</TH>
Line 19: Line 22:
   <TH>chrom<BR>count</TH>
   <TH>chrom<BR>count</TH>
   <TH>total<BR>size</TH>
   <TH>total<BR>size</TH>
   <TH>non-N<BR>bases</TH>
   <TH>non-N<BR>bases</TH>
   <TH>N&nbsp;base<BR>count</TH>
   <TH>N&nbsp;base<BR>count</TH>
   <TH>%&nbsp;masked</TH>
   <TH>%&nbsp;masked</TH>
   <TH>common&nbsp;name</TH>
   <TH>common&nbsp;name</TH>
   <TH>%&nbsp;of&nbsp;hg18<BR>matched<BR>(chainLink&nbsp;table)</TH>
   <TH>%&nbsp;of&nbsp;hg18<BR>matched<BR>(chainLink&nbsp;table)</TH>
  <TH>alignment&nbsp;type</TH>
  <TH>chain<BR>minScore</TH>
  <TH>chain<BR>linearGap</TH>
<TR>
<TR>
<TR>
<TR><TH ALIGN=RIGHT>01</TH><TH ALIGN=RIGHT>hg18</TH><TH ALIGN=RIGHT>49</TH>
  <TH ALIGN=RIGHT>01</TH><TH ALIGN=RIGHT>hg18</TH><TH ALIGN=RIGHT>49</TH>
   <TD ALIGN=RIGHT>3,107,677,273</TD><TD ALIGN=RIGHT>2,881,421,696</TD>
   <TD ALIGN=RIGHT>3,107,677,273</TD><TD ALIGN=RIGHT>2,881,421,696</TD>
   <TD ALIGN=RIGHT>226,255,577</TD><TD ALIGN=RIGHT>%&nbsp;48.85</TD>
   <TD ALIGN=RIGHT>226,255,577</TD><TD ALIGN=RIGHT>%&nbsp;48.85</TD>
   <TD ALIGN=CENTER>Human</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=CENTER>Human</TD><TD ALIGN=RIGHT>N/A</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>N/A</TD><TD ALIGN=RIGHT>10000</TD>
  <TH ALIGN=RIGHT>02</TH><TH ALIGN=RIGHT>panTro2</TH><TH ALIGN=RIGHT>52</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>02</TH><TH ALIGN=RIGHT>panTro2</TH><TH ALIGN=RIGHT>52</TH>
   <TD ALIGN=RIGHT>3,350,447,512</TD><TD ALIGN=RIGHT>2,909,246,738</TD>
   <TD ALIGN=RIGHT>3,350,447,512</TD><TD ALIGN=RIGHT>2,909,246,738</TD>
   <TD ALIGN=RIGHT>441,200,774</TD><TD ALIGN=RIGHT>%&nbsp;48.90</TD>
   <TD ALIGN=RIGHT>441,200,774</TD><TD ALIGN=RIGHT>%&nbsp;48.90</TD>
   <TD ALIGN=CENTER>Chimp</TD><TD ALIGN=RIGHT>94.888%</TD>
   <TD ALIGN=CENTER>Chimp</TD><TD ALIGN=RIGHT>94.888%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>unknown</TD>
<TR>
  <TD ALIGN=CENTER>unknown</TD></TR>
  <TH ALIGN=RIGHT>03</TH>
<TR><TH ALIGN=RIGHT>03</TH><TH ALIGN=RIGHT>gorGor1</TH><TH ALIGN=RIGHT>609,861</TH>
  <TH ALIGN=RIGHT>gorGor1</TH><TD ALIGN=CENTER COLSPAN=7>to be done</TD>
  <TD ALIGN=RIGHT>2,323,645,895</TD><TD ALIGN=RIGHT>2,043,974,660</TD>
</TR>
 
<TR>
  <TD ALIGN=RIGHT>279,671,235</TD><TD ALIGN=RIGHT>%&nbsp;47.27</TD>
  <TH ALIGN=RIGHT>04</TH><TH ALIGN=RIGHT>ponAbe2</TH><TH ALIGN=RIGHT>55</TH>
  <TD ALIGN=CENTER>Gorilla</TD><TD ALIGN=RIGHT>61.731%</TD>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>04</TH><TH ALIGN=RIGHT>ponAbe2</TH><TH ALIGN=RIGHT>55</TH>
 
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
   <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
   <TD ALIGN=RIGHT>353,228,224</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=RIGHT>353,228,224</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=CENTER>Orangutan</TD><TD ALIGN=RIGHT>92.892%</TD>
   <TD ALIGN=CENTER>Orangutan</TD><TD ALIGN=RIGHT>92.892%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>05</TH><TH ALIGN=RIGHT>rheMac2</TH><TH ALIGN=RIGHT>22</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>05</TH><TH ALIGN=RIGHT>rheMac2</TH><TH ALIGN=RIGHT>22</TH>
   <TD ALIGN=RIGHT>2,864,106,071</TD><TD ALIGN=RIGHT>2,646,668,809</TD>
   <TD ALIGN=RIGHT>2,864,106,071</TD><TD ALIGN=RIGHT>2,646,668,809</TD>
   <TD ALIGN=RIGHT>217,437,262</TD><TD ALIGN=RIGHT>%&nbsp;48.28</TD>
   <TD ALIGN=RIGHT>217,437,262</TD><TD ALIGN=RIGHT>%&nbsp;48.28</TD>
   <TD ALIGN=CENTER>Rhesus</TD><TD ALIGN=RIGHT>85.552%</TD>
   <TD ALIGN=CENTER>Rhesus</TD><TD ALIGN=RIGHT>85.552%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>unknown</TD>
  <TH ALIGN=RIGHT>06</TH><TH ALIGN=RIGHT>calJac1</TH><TH ALIGN=RIGHT>49,724</TH>
  <TD ALIGN=CENTER>unknown</TD></TR>
<TR><TH ALIGN=RIGHT>06</TH><TH ALIGN=RIGHT>calJac1</TH><TH ALIGN=RIGHT>49,724</TH>
   <TD ALIGN=RIGHT>3,029,401,840</TD><TD ALIGN=RIGHT>2,929,124,957</TD>
   <TD ALIGN=RIGHT>3,029,401,840</TD><TD ALIGN=RIGHT>2,929,124,957</TD>
   <TD ALIGN=RIGHT>100,276,883</TD><TD ALIGN=RIGHT>%&nbsp;47.50</TD>
   <TD ALIGN=RIGHT>100,276,883</TD><TD ALIGN=RIGHT>%&nbsp;47.50</TD>
   <TD ALIGN=CENTER>Marmoset</TD><TD ALIGN=RIGHT>78.351%</TD>
   <TD ALIGN=CENTER>Marmoset</TD><TD ALIGN=RIGHT>78.351%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>07</TH><TH ALIGN=RIGHT>tarSyr1</TH><TH ALIGN=RIGHT>656,709</TH>
<TR><TH ALIGN=RIGHT>07</TH><TH ALIGN=RIGHT>tarSyr1</TH><TH ALIGN=RIGHT>656,709</TH>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
   <TD ALIGN=RIGHT>3,179,905,132</TD><TD ALIGN=RIGHT>2,768,536,343</TD>
   <TD ALIGN=RIGHT>411,368,789</TD><TD ALIGN=RIGHT>%&nbsp;41.75</TD>
   <TD ALIGN=RIGHT>411,368,789</TD><TD ALIGN=RIGHT>%&nbsp;41.75</TD>
   <TD ALIGN=CENTER>Tarsier</TD><TD ALIGN=RIGHT>47.999%</TD>
   <TD ALIGN=CENTER>Tarsier</TD><TD ALIGN=RIGHT>47.999%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>08</TH><TH ALIGN=RIGHT>otoGar1</TH><TH ALIGN=RIGHT>120,882</TH>
<TR><TH ALIGN=RIGHT>08</TH><TH ALIGN=RIGHT>otoGar1</TH><TH ALIGN=RIGHT>120,882</TH>
 
   <TD ALIGN=RIGHT>3,420,058,864</TD><TD ALIGN=RIGHT>1,969,052,059</TD>
   <TD ALIGN=RIGHT>3,420,058,864</TD><TD ALIGN=RIGHT>1,969,052,059</TD>
   <TD ALIGN=RIGHT>1,451,006,805</TD><TD ALIGN=RIGHT>%&nbsp;34.89</TD>
   <TD ALIGN=RIGHT>1,451,006,805</TD><TD ALIGN=RIGHT>%&nbsp;34.89</TD>
   <TD ALIGN=CENTER>Bushbaby</TD><TD ALIGN=RIGHT>44.638%</TD>
   <TD ALIGN=CENTER>Bushbaby</TD><TD ALIGN=RIGHT>44.638%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>09</TH><TH ALIGN=RIGHT>micMur1</TH><TH ALIGN=RIGHT>185,042</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>09</TH><TH ALIGN=RIGHT>micMur1</TH><TH ALIGN=RIGHT>185,042</TH>
   <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
   <TD ALIGN=RIGHT>2,902,270,736</TD><TD ALIGN=RIGHT>1,852,394,361</TD>
   <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
   <TD ALIGN=RIGHT>1,049,876,375</TD><TD ALIGN=RIGHT>%&nbsp;37.31</TD>
   <TD ALIGN=CENTER>Mouse lemur</TD><TD ALIGN=RIGHT>46.445%</TD>
   <TD ALIGN=CENTER>Mouse lemur</TD><TD ALIGN=RIGHT>46.445%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>10</TH><TH ALIGN=RIGHT>tupBel1</TH><TH ALIGN=RIGHT>150,851</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>10</TH><TH ALIGN=RIGHT>tupBel1</TH><TH ALIGN=RIGHT>150,851</TH>
   <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
   <TD ALIGN=RIGHT>3,660,774,957</TD><TD ALIGN=RIGHT>2,137,225,476</TD>
   <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
   <TD ALIGN=RIGHT>1,523,549,481</TD><TD ALIGN=RIGHT>%&nbsp;20.43</TD>
   <TD ALIGN=CENTER>TreeShrew</TD><TD ALIGN=RIGHT>37.348%</TD>
   <TD ALIGN=CENTER>TreeShrew</TD><TD ALIGN=RIGHT>37.348%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>unknown</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>11</TH><TH ALIGN=RIGHT>mm9</TH><TH ALIGN=RIGHT>35</TH>
<TR><TH ALIGN=RIGHT>11</TH><TH ALIGN=RIGHT>mm9</TH><TH ALIGN=RIGHT>35</TH>
   <TD ALIGN=RIGHT>2,725,765,481</TD><TD ALIGN=RIGHT>2,620,345,972</TD>
   <TD ALIGN=RIGHT>2,725,765,481</TD><TD ALIGN=RIGHT>2,620,345,972</TD>
   <TD ALIGN=RIGHT>105,419,509</TD><TD ALIGN=RIGHT>%&nbsp;44.09</TD>
   <TD ALIGN=RIGHT>105,419,509</TD><TD ALIGN=RIGHT>%&nbsp;44.09</TD>
   <TD ALIGN=CENTER>Mouse</TD><TD ALIGN=RIGHT>35.201%</TD>
   <TD ALIGN=CENTER>Mouse</TD><TD ALIGN=RIGHT>35.201%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>12</TH><TH ALIGN=RIGHT>rn4</TH><TH ALIGN=RIGHT>45</TH>
<TR><TH ALIGN=RIGHT>12</TH><TH ALIGN=RIGHT>rn4</TH><TH ALIGN=RIGHT>45</TH>
 
   <TD ALIGN=RIGHT>2,834,127,293</TD><TD ALIGN=RIGHT>2,566,294,765</TD>
   <TD ALIGN=RIGHT>2,834,127,293</TD><TD ALIGN=RIGHT>2,566,294,765</TD>
   <TD ALIGN=RIGHT>267,832,528</TD><TD ALIGN=RIGHT>%&nbsp;44.29</TD>
   <TD ALIGN=RIGHT>267,832,528</TD><TD ALIGN=RIGHT>%&nbsp;44.29</TD>
   <TD ALIGN=CENTER>Rat</TD><TD ALIGN=RIGHT>32.893%</TD>
   <TD ALIGN=CENTER>Rat</TD><TD ALIGN=RIGHT>32.893%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>unknown</TD>
<TR>
 
  <TH ALIGN=RIGHT>13</TH><TH ALIGN=RIGHT>dipOrd1</TH><TH ALIGN=RIGHT>210,053</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>13</TH><TH ALIGN=RIGHT>dipOrd1</TH><TH ALIGN=RIGHT>210,053</TH>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
   <TD ALIGN=RIGHT>2,158,502,098</TD><TD ALIGN=RIGHT>1,844,961,421</TD>
   <TD ALIGN=RIGHT>313,540,677</TD><TD ALIGN=RIGHT>%&nbsp;28.28</TD>
   <TD ALIGN=RIGHT>313,540,677</TD><TD ALIGN=RIGHT>%&nbsp;28.28</TD>
   <TD ALIGN=CENTER>Kangaroo rat</TD><TD ALIGN=RIGHT>27.282%</TD>
   <TD ALIGN=CENTER>Kangaroo rat</TD><TD ALIGN=RIGHT>27.282%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>14</TH><TH ALIGN=RIGHT>cavPor3</TH><TH ALIGN=RIGHT>3,144</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>14</TH><TH ALIGN=RIGHT>cavPor3</TH><TH ALIGN=RIGHT>3,144</TH>
   <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
   <TD ALIGN=RIGHT>2,723,219,641</TD><TD ALIGN=RIGHT>2,663,369,733</TD>
   <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
   <TD ALIGN=RIGHT>59,849,908</TD><TD ALIGN=RIGHT>%&nbsp;27.53</TD>
   <TD ALIGN=CENTER>Guinea Pig</TD><TD ALIGN=RIGHT>43.971%</TD>
   <TD ALIGN=CENTER>Guinea Pig</TD><TD ALIGN=RIGHT>43.971%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>15</TH><TH ALIGN=RIGHT>speTri1</TH><TH ALIGN=RIGHT>160,889</TH>
<TR><TH ALIGN=RIGHT>15</TH><TH ALIGN=RIGHT>speTri1</TH><TH ALIGN=RIGHT>160,889</TH>
   <TD ALIGN=RIGHT>3,488,768,592</TD><TD ALIGN=RIGHT>1,913,367,893</TD>
   <TD ALIGN=RIGHT>3,488,768,592</TD><TD ALIGN=RIGHT>1,913,367,893</TD>
   <TD ALIGN=RIGHT>1,575,400,699</TD><TD ALIGN=RIGHT>%&nbsp;26.90</TD>
   <TD ALIGN=RIGHT>1,575,400,699</TD><TD ALIGN=RIGHT>%&nbsp;26.90</TD>
   <TD ALIGN=CENTER>Squirrel</TD><TD ALIGN=RIGHT>35.828%</TD>
   <TD ALIGN=CENTER>Squirrel</TD><TD ALIGN=RIGHT>35.828%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>16</TH><TH ALIGN=RIGHT>oryCun1</TH><TH ALIGN=RIGHT>215,471</TH>
<TR><TH ALIGN=RIGHT>16</TH><TH ALIGN=RIGHT>oryCun1</TH><TH ALIGN=RIGHT>215,471</TH>
 
   <TD ALIGN=RIGHT>3,464,410,039</TD><TD ALIGN=RIGHT>2,076,044,328</TD>
   <TD ALIGN=RIGHT>3,464,410,039</TD><TD ALIGN=RIGHT>2,076,044,328</TD>
   <TD ALIGN=RIGHT>1,388,365,711</TD><TD ALIGN=RIGHT>%&nbsp;37.44</TD>
   <TD ALIGN=RIGHT>1,388,365,711</TD><TD ALIGN=RIGHT>%&nbsp;37.44</TD>
   <TD ALIGN=CENTER>Rabbit</TD><TD ALIGN=RIGHT>34.015%</TD>
   <TD ALIGN=CENTER>Rabbit</TD><TD ALIGN=RIGHT>34.015%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>17</TH><TH ALIGN=RIGHT>ochPri2</TH><TH ALIGN=RIGHT>187,558</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>17</TH><TH ALIGN=RIGHT>ochPri2</TH><TH ALIGN=RIGHT>187,558</TH>
   <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
   <TD ALIGN=RIGHT>3,445,784,354</TD><TD ALIGN=RIGHT>1,923,624,051</TD>
   <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
   <TD ALIGN=RIGHT>1,522,160,303</TD><TD ALIGN=RIGHT>%&nbsp;11.44</TD>
   <TD ALIGN=CENTER>Pika</TD><TD ALIGN=RIGHT>27.974%</TD>
   <TD ALIGN=CENTER>Pika</TD><TD ALIGN=RIGHT>27.974%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>18</TH><TH ALIGN=RIGHT>sorAra1</TH><TH ALIGN=RIGHT>262,057</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>18</TH><TH ALIGN=RIGHT>sorAra1</TH><TH ALIGN=RIGHT>262,057</TH>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
   <TD ALIGN=RIGHT>2,936,119,008</TD><TD ALIGN=RIGHT>1,832,864,697</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
   <TD ALIGN=RIGHT>1,103,254,311</TD><TD ALIGN=RIGHT>%&nbsp;39.07</TD>
   <TD ALIGN=CENTER>Shrew</TD><TD ALIGN=RIGHT>20.056%</TD>
   <TD ALIGN=CENTER>Shrew</TD><TD ALIGN=RIGHT>20.056%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>19</TH><TH ALIGN=RIGHT>eriEur1</TH><TH ALIGN=RIGHT>379,802</TH>
<TR><TH ALIGN=RIGHT>19</TH><TH ALIGN=RIGHT>eriEur1</TH><TH ALIGN=RIGHT>379,802</TH>
   <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
   <TD ALIGN=RIGHT>3,367,787,358</TD><TD ALIGN=RIGHT>2,133,134,836</TD>
   <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=RIGHT>1,234,652,522</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
   <TD ALIGN=CENTER>hedgehog</TD><TD ALIGN=RIGHT>19.622%</TD>
   <TD ALIGN=CENTER>Hedgehog</TD><TD ALIGN=RIGHT>19.622%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>20</TH><TH ALIGN=RIGHT>felCat3</TH><TH ALIGN=RIGHT>217,790</TH>  
<TR><TH ALIGN=RIGHT>20</TH><TH ALIGN=RIGHT>felCat3</TH><TH ALIGN=RIGHT>217,790</TH>
 
   <TD ALIGN=RIGHT>4,045,535,322</TD><TD ALIGN=RIGHT>1,642,698,377</TD>
   <TD ALIGN=RIGHT>4,045,535,322</TD><TD ALIGN=RIGHT>1,642,698,377</TD>
   <TD ALIGN=RIGHT>2,402,836,945</TD><TD ALIGN=RIGHT>%&nbsp;37.66</TD>
   <TD ALIGN=RIGHT>2,402,836,945</TD><TD ALIGN=RIGHT>%&nbsp;37.66</TD>
   <TD ALIGN=CENTER>Cat</TD><TD ALIGN=RIGHT>35.888%</TD>
   <TD ALIGN=CENTER>Cat</TD><TD ALIGN=RIGHT>35.888%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>21</TH><TH ALIGN=RIGHT>canFam2</TH><TH ALIGN=RIGHT>41</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>21</TH><TH ALIGN=RIGHT>canFam2</TH><TH ALIGN=RIGHT>41</TH>
   <TD ALIGN=RIGHT>2,531,673,953</TD><TD ALIGN=RIGHT>2,384,996,543</TD>
   <TD ALIGN=RIGHT>2,531,673,953</TD><TD ALIGN=RIGHT>2,384,996,543</TD>
   <TD ALIGN=RIGHT>146,677,410</TD><TD ALIGN=RIGHT>%&nbsp;40.63</TD>
   <TD ALIGN=RIGHT>146,677,410</TD><TD ALIGN=RIGHT>%&nbsp;40.63</TD>
   <TD ALIGN=CENTER>Dog</TD><TD ALIGN=RIGHT>52.915%</TD>
   <TD ALIGN=CENTER>Dog</TD><TD ALIGN=RIGHT>52.915%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>22</TH><TH ALIGN=RIGHT>equCab2</TH><TH ALIGN=RIGHT>34</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>22</TH><TH ALIGN=RIGHT>equCab2</TH><TH ALIGN=RIGHT>34</TH>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
   <TD ALIGN=RIGHT>2,484,532,062</TD><TD ALIGN=RIGHT>2,428,790,173</TD>
   <TD ALIGN=RIGHT>55,741,889</TD><TD ALIGN=RIGHT>%&nbsp;40.97</TD>
   <TD ALIGN=RIGHT>55,741,889</TD><TD ALIGN=RIGHT>%&nbsp;40.97</TD>
   <TD ALIGN=CENTER>Horse</TD><TD ALIGN=RIGHT>57.162%</TD>
   <TD ALIGN=CENTER>Horse</TD><TD ALIGN=RIGHT>57.162%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>23</TH><TH ALIGN=RIGHT>pteVam1</TH><TH ALIGN=RIGHT>96,944</TH>
<TR><TH ALIGN=RIGHT>23</TH><TH ALIGN=RIGHT>pteVam1</TH><TH ALIGN=RIGHT>96,944</TH>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
   <TD ALIGN=RIGHT>1,996,076,410</TD><TD ALIGN=RIGHT>1,839,436,660</TD>
   <TD ALIGN=RIGHT>156,639,750</TD><TD ALIGN=RIGHT>%&nbsp;31.75</TD>
   <TD ALIGN=RIGHT>156,639,750</TD><TD ALIGN=RIGHT>%&nbsp;31.75</TD>
   <TD ALIGN=CENTER>Megabat</TD><TD ALIGN=RIGHT>45.502%</TD>
   <TD ALIGN=CENTER>Megabat</TD><TD ALIGN=RIGHT>45.502%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>24</TH><TH ALIGN=RIGHT>myoLuc1</TH><TH ALIGN=RIGHT>193,323</TH>
<TR><TH ALIGN=RIGHT>24</TH><TH ALIGN=RIGHT>myoLuc1</TH><TH ALIGN=RIGHT>193,323</TH>
 
   <TD ALIGN=RIGHT>2,850,051,559</TD><TD ALIGN=RIGHT>1,673,855,868</TD>
   <TD ALIGN=RIGHT>2,850,051,559</TD><TD ALIGN=RIGHT>1,673,855,868</TD>
   <TD ALIGN=RIGHT>1,176,195,691</TD><TD ALIGN=RIGHT>%&nbsp;24.90</TD>
   <TD ALIGN=RIGHT>1,176,195,691</TD><TD ALIGN=RIGHT>%&nbsp;24.90</TD>
   <TD ALIGN=CENTER>Microbat</TD><TD ALIGN=RIGHT>33.044%</TD>
   <TD ALIGN=CENTER>Microbat</TD><TD ALIGN=RIGHT>33.044%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>25</TH><TH ALIGN=RIGHT>turTru1</TH><TH ALIGN=RIGHT>116,467</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>25</TH><TH ALIGN=RIGHT>turTru1</TH><TH ALIGN=RIGHT>116,467</TH>
   <TD ALIGN=RIGHT>2,519,048,486</TD><TD ALIGN=RIGHT>2,298,444,090</TD>
   <TD ALIGN=RIGHT>2,519,048,486</TD><TD ALIGN=RIGHT>2,298,444,090</TD>
   <TD ALIGN=RIGHT>220,604,396</TD><TD ALIGN=RIGHT>%&nbsp;43.86</TD>
   <TD ALIGN=RIGHT>220,604,396</TD><TD ALIGN=RIGHT>%&nbsp;43.86</TD>
   <TD ALIGN=CENTER>Dolphin</TD><TD ALIGN=RIGHT>48.537%</TD>
   <TD ALIGN=CENTER>Dolphin</TD><TD ALIGN=RIGHT>48.537%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>26</TH><TH ALIGN=RIGHT>bosTau4</TH><TH ALIGN=RIGHT>11,900</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>26</TH><TH ALIGN=RIGHT>bosTau4</TH><TH ALIGN=RIGHT>11,900</TH>
   <TD ALIGN=RIGHT>2,917,974,530</TD><TD ALIGN=RIGHT>2,731,813,236</TD>
   <TD ALIGN=RIGHT>2,917,974,530</TD><TD ALIGN=RIGHT>2,731,813,236</TD>
   <TD ALIGN=RIGHT>186,161,294</TD><TD ALIGN=RIGHT>%&nbsp;46.89</TD>
   <TD ALIGN=RIGHT>186,161,294</TD><TD ALIGN=RIGHT>%&nbsp;46.89</TD>
   <TD ALIGN=CENTER>Cow</TD><TD ALIGN=RIGHT>46.689%</TD>
   <TD ALIGN=CENTER>Cow</TD><TD ALIGN=RIGHT>46.689%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>27</TH><TH ALIGN=RIGHT>vicPac1</TH><TH ALIGN=RIGHT>298,413</TH>
<TR><TH ALIGN=RIGHT>27</TH><TH ALIGN=RIGHT>vicPac1</TH><TH ALIGN=RIGHT>298,413</TH>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
   <TD ALIGN=RIGHT>2,962,253,608</TD><TD ALIGN=RIGHT>1,922,910,435</TD>
   <TD ALIGN=RIGHT>1,039,343,173</TD><TD ALIGN=RIGHT>%&nbsp;32.24</TD>
   <TD ALIGN=RIGHT>1,039,343,173</TD><TD ALIGN=RIGHT>%&nbsp;32.24</TD>
   <TD ALIGN=CENTER>Alpaca</TD><TD ALIGN=RIGHT>39.531%</TD>
   <TD ALIGN=CENTER>Alpaca</TD><TD ALIGN=RIGHT>39.531%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>28</TH><TH ALIGN=RIGHT>dasNov2</TH><TH ALIGN=RIGHT>292,141</TH>
<TR><TH ALIGN=RIGHT>28</TH><TH ALIGN=RIGHT>dasNov2</TH><TH ALIGN=RIGHT>292,141</TH>
 
   <TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD>
   <TD ALIGN=RIGHT>4,813,823,562</TD><TD ALIGN=RIGHT>2,371,493,872</TD>
   <TD ALIGN=RIGHT>2,442,329,690</TD><TD ALIGN=RIGHT>%&nbsp;37.23</TD>
   <TD ALIGN=RIGHT>2,442,329,690</TD><TD ALIGN=RIGHT>%&nbsp;37.23</TD>
   <TD ALIGN=CENTER>Armadillo</TD><TD ALIGN=RIGHT>33.663%</TD>
   <TD ALIGN=CENTER>Armadillo</TD><TD ALIGN=RIGHT>33.663%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>29</TH><TH ALIGN=RIGHT>choHof1</TH><TH ALIGN=RIGHT>481,259</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>29</TH><TH ALIGN=RIGHT>choHof1</TH><TH ALIGN=RIGHT>481,259</TH>
   <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
   <TD ALIGN=RIGHT>2,458,927,620</TD><TD ALIGN=RIGHT>2,060,419,685</TD>
   <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
   <TD ALIGN=RIGHT>398,507,935</TD><TD ALIGN=RIGHT>%&nbsp;35.67</TD>
   <TD ALIGN=CENTER>Sloth</TD><TD ALIGN=RIGHT>34.463%</TD>
   <TD ALIGN=CENTER>Sloth</TD><TD ALIGN=RIGHT>34.463%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
  <TH ALIGN=RIGHT>30</TH><TH ALIGN=RIGHT>echTel1</TH><TH ALIGN=RIGHT>325,491</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>30</TH><TH ALIGN=RIGHT>echTel1</TH><TH ALIGN=RIGHT>325,491</TH>
   <TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD>
   <TD ALIGN=RIGHT>3,823,724,728</TD><TD ALIGN=RIGHT>2,111,581,369</TD>
   <TD ALIGN=RIGHT>1,712,143,359</TD><TD ALIGN=RIGHT>%&nbsp;13.84</TD>
   <TD ALIGN=RIGHT>1,712,143,359</TD><TD ALIGN=RIGHT>%&nbsp;13.84</TD>
   <TD ALIGN=CENTER>Tenrec</TD><TD ALIGN=RIGHT>23.645%</TD>
   <TD ALIGN=CENTER>Tenrec</TD><TD ALIGN=RIGHT>23.645%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>31</TH><TH ALIGN=RIGHT>loxAfr2</TH><TH ALIGN=RIGHT>225,378</TH>
<TR><TH ALIGN=RIGHT>31</TH><TH ALIGN=RIGHT>loxAfr2</TH><TH ALIGN=RIGHT>225,378</TH>
   <TD ALIGN=RIGHT>4,170,414,852</TD><TD ALIGN=RIGHT>2,444,975,542</TD>
   <TD ALIGN=RIGHT>4,170,414,852</TD><TD ALIGN=RIGHT>2,444,975,542</TD>
   <TD ALIGN=RIGHT>1,725,439,310</TD><TD ALIGN=RIGHT>%&nbsp;44.13</TD>
   <TD ALIGN=RIGHT>1,725,439,310</TD><TD ALIGN=RIGHT>%&nbsp;44.13</TD>
   <TD ALIGN=CENTER>Elephant</TD><TD ALIGN=RIGHT>35.204%</TD>
   <TD ALIGN=CENTER>Elephant</TD><TD ALIGN=RIGHT>35.204%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
  <TD ALIGN=CENTER>medium</TD></TR>
  <TH ALIGN=RIGHT>32</TH><TH ALIGN=RIGHT>proCap1</TH><TH ALIGN=RIGHT>295,006</TH>
<TR><TH ALIGN=RIGHT>32</TH><TH ALIGN=RIGHT>proCap1</TH><TH ALIGN=RIGHT>295,006</TH>
 
   <TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD>
   <TD ALIGN=RIGHT>2,985,258,999</TD><TD ALIGN=RIGHT>2,407,847,681</TD>
   <TD ALIGN=RIGHT>577,411,318</TD><TD ALIGN=RIGHT>%&nbsp;28.11</TD>
   <TD ALIGN=RIGHT>577,411,318</TD><TD ALIGN=RIGHT>%&nbsp;28.11</TD>
   <TD ALIGN=CENTER>Rock hyrax</TD><TD ALIGN=RIGHT>30.935%</TD>
   <TD ALIGN=CENTER>Rock hyrax</TD><TD ALIGN=RIGHT>30.935%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>3000</TD>
<TR>
 
  <TH ALIGN=RIGHT>33</TH><TH ALIGN=RIGHT>monDom4</TH><TH ALIGN=RIGHT>10</TH>
  <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>33</TH><TH ALIGN=RIGHT>monDom4</TH><TH ALIGN=RIGHT>10</TH>
   <TD ALIGN=RIGHT>3,605,614,649</TD><TD ALIGN=RIGHT>3,501,643,220</TD>
   <TD ALIGN=RIGHT>3,605,614,649</TD><TD ALIGN=RIGHT>3,501,643,220</TD>
   <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.69</TD>
   <TD ALIGN=RIGHT>103,971,429</TD><TD ALIGN=RIGHT>%&nbsp;55.69</TD>
   <TD ALIGN=CENTER>Opossum</TD><TD ALIGN=RIGHT>12.385%</TD>
   <TD ALIGN=CENTER>Opossum</TD><TD ALIGN=RIGHT>12.385%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>5000</TD>
  <TH ALIGN=RIGHT>34</TH><TH ALIGN=RIGHT>ornAna1</TH><TH ALIGN=RIGHT>201,523</TH>  
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>34</TH><TH ALIGN=RIGHT>ornAna1</TH><TH ALIGN=RIGHT>201,523</TH>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
   <TD ALIGN=RIGHT>1,996,811,212</TD><TD ALIGN=RIGHT>1,842,235,522</TD>
   <TD ALIGN=RIGHT>154,575,690</TD><TD ALIGN=RIGHT>%&nbsp;47.89</TD>
   <TD ALIGN=RIGHT>154,575,690</TD><TD ALIGN=RIGHT>%&nbsp;47.89</TD>
   <TD ALIGN=CENTER>Platypus</TD><TD ALIGN=RIGHT>7.870%</TD>
   <TD ALIGN=CENTER>Platypus</TD><TD ALIGN=RIGHT>7.870%</TD>
</TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>unknown</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>35</TH><TH ALIGN=RIGHT>galGal3</TH><TH ALIGN=RIGHT>57</TH>
<TR><TH ALIGN=RIGHT>35</TH><TH ALIGN=RIGHT>galGal3</TH><TH ALIGN=RIGHT>57</TH>
   <TD ALIGN=RIGHT>1,100,480,441</TD><TD ALIGN=RIGHT>1,042,583,135</TD>
   <TD ALIGN=RIGHT>1,100,480,441</TD><TD ALIGN=RIGHT>1,042,583,135</TD>
   <TD ALIGN=RIGHT>57,897,306</TD><TD ALIGN=RIGHT>%&nbsp;9.85</TD>
   <TD ALIGN=RIGHT>57,897,306</TD><TD ALIGN=RIGHT>%&nbsp;9.85</TD>
   <TD ALIGN=CENTER>Chicken</TD><TD ALIGN=RIGHT>3.589%</TD>
   <TD ALIGN=CENTER>Chicken</TD><TD ALIGN=RIGHT>3.589%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>36</TH><TH ALIGN=RIGHT>taeGut1</TH><TH ALIGN=RIGHT>70</TH>
<TR><TH ALIGN=RIGHT>36</TH><TH ALIGN=RIGHT>taeGut1</TH><TH ALIGN=RIGHT>70</TH>
 
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
   <TD ALIGN=RIGHT>1,233,186,341</TD><TD ALIGN=RIGHT>1,222,864,691</TD>
   <TD ALIGN=RIGHT>10,321,650</TD><TD ALIGN=RIGHT>%&nbsp;20.42</TD>
   <TD ALIGN=RIGHT>10,321,650</TD><TD ALIGN=RIGHT>%&nbsp;20.42</TD>
   <TD ALIGN=CENTER>Zebra finch</TD><TD ALIGN=RIGHT>3.503%</TD>
   <TD ALIGN=CENTER>Zebra finch</TD><TD ALIGN=RIGHT>3.503%</TD>
</TR>
  <TD ALIGN=CENTER>SyntenicNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
 
  <TH ALIGN=RIGHT>37</TH><TH ALIGN=RIGHT>anoCar1</TH><TH ALIGN=RIGHT>7,233</TH>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>37</TH><TH ALIGN=RIGHT>anoCar1</TH><TH ALIGN=RIGHT>7,233</TH>
   <TD ALIGN=RIGHT>1,781,602,899</TD><TD ALIGN=RIGHT>1,741,478,929</TD>
   <TD ALIGN=RIGHT>1,781,602,899</TD><TD ALIGN=RIGHT>1,741,478,929</TD>
   <TD ALIGN=RIGHT>40,123,970</TD><TD ALIGN=RIGHT>%&nbsp;42.56</TD>
   <TD ALIGN=RIGHT>40,123,970</TD><TD ALIGN=RIGHT>%&nbsp;42.56</TD>
   <TD ALIGN=CENTER>Lizard</TD><TD ALIGN=RIGHT>4.774%</TD>
   <TD ALIGN=CENTER>Lizard</TD><TD ALIGN=RIGHT>4.774%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>RecipBest</TD><TD ALIGN=RIGHT>5000</TD>
  <TH ALIGN=RIGHT>38</TH><TH ALIGN=RIGHT>xenTro2</TH><TH ALIGN=RIGHT>19,759</TH>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>38</TH><TH ALIGN=RIGHT>xenTro2</TH><TH ALIGN=RIGHT>19,759</TH>
   <TD ALIGN=RIGHT>1,513,925,492</TD><TD ALIGN=RIGHT>1,359,400,017</TD>
   <TD ALIGN=RIGHT>1,513,925,492</TD><TD ALIGN=RIGHT>1,359,400,017</TD>
   <TD ALIGN=RIGHT>154,525,475</TD><TD ALIGN=RIGHT>%&nbsp;19.65</TD>
   <TD ALIGN=RIGHT>154,525,475</TD><TD ALIGN=RIGHT>%&nbsp;19.65</TD>
   <TD ALIGN=CENTER>X. tropicalis</TD><TD ALIGN=RIGHT>2.623%</TD>
   <TD ALIGN=CENTER>X. tropicalis</TD><TD ALIGN=RIGHT>2.623%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>39</TH><TH ALIGN=RIGHT>danRer5</TH><TH ALIGN=RIGHT>5,036</TH>
<TR><TH ALIGN=RIGHT>39</TH><TH ALIGN=RIGHT>danRer5</TH><TH ALIGN=RIGHT>5,036</TH>
   <TD ALIGN=RIGHT>1,440,582,308</TD><TD ALIGN=RIGHT>1,435,595,672</TD>
   <TD ALIGN=RIGHT>1,440,582,308</TD><TD ALIGN=RIGHT>1,435,595,672</TD>
   <TD ALIGN=RIGHT>4,986,636</TD><TD ALIGN=RIGHT>%&nbsp;49.53</TD>
   <TD ALIGN=RIGHT>4,986,636</TD><TD ALIGN=RIGHT>%&nbsp;49.53</TD>
   <TD ALIGN=CENTER>Zebrafish</TD><TD ALIGN=RIGHT>2.565%</TD>
   <TD ALIGN=CENTER>Zebrafish</TD><TD ALIGN=RIGHT>2.565%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>40</TH><TH ALIGN=RIGHT>tetNig1</TH><TH ALIGN=RIGHT>27</TH>
<TR><TH ALIGN=RIGHT>40</TH><TH ALIGN=RIGHT>tetNig1</TH><TH ALIGN=RIGHT>27</TH>
 
   <TD ALIGN=RIGHT>402,240,326</TD><TD ALIGN=RIGHT>312,394,419</TD>
   <TD ALIGN=RIGHT>402,240,326</TD><TD ALIGN=RIGHT>312,394,419</TD>
   <TD ALIGN=RIGHT>89,845,907</TD><TD ALIGN=RIGHT>%&nbsp;4.34</TD>
   <TD ALIGN=RIGHT>89,845,907</TD><TD ALIGN=RIGHT>%&nbsp;4.34</TD>
   <TD ALIGN=CENTER>Tetraodon</TD><TD ALIGN=RIGHT>2.001%</TD>
   <TD ALIGN=CENTER>Tetraodon</TD><TD ALIGN=RIGHT>2.001%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
 
  <TH ALIGN=RIGHT>41</TH><TH ALIGN=RIGHT>fr2</TH><TH ALIGN=RIGHT>2</TH>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>41</TH><TH ALIGN=RIGHT>fr2</TH><TH ALIGN=RIGHT>2</TH>
   <TD ALIGN=RIGHT>400,525,790</TD><TD ALIGN=RIGHT>351,212,245</TD>
   <TD ALIGN=RIGHT>400,525,790</TD><TD ALIGN=RIGHT>351,212,245</TD>
   <TD ALIGN=RIGHT>49,313,545</TD><TD ALIGN=RIGHT>%&nbsp;19.01</TD>
   <TD ALIGN=RIGHT>49,313,545</TD><TD ALIGN=RIGHT>%&nbsp;19.01</TD>
   <TD ALIGN=CENTER>Fugu</TD><TD ALIGN=RIGHT>1.766%</TD>
   <TD ALIGN=CENTER>Fugu</TD><TD ALIGN=RIGHT>1.766%</TD>
</TR>
 
<TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>2000</TD>
  <TH ALIGN=RIGHT>42</TH><TH ALIGN=RIGHT>gasAcu1</TH><TH ALIGN=RIGHT>23</TH>
  <TD ALIGN=CENTER>loose</TD></TR>
<TR><TH ALIGN=RIGHT>42</TH><TH ALIGN=RIGHT>gasAcu1</TH><TH ALIGN=RIGHT>23</TH>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
   <TD ALIGN=RIGHT>463,354,448</TD><TD ALIGN=RIGHT>446,627,861</TD>
   <TD ALIGN=RIGHT>16,726,587</TD><TD ALIGN=RIGHT>%&nbsp;2.58</TD>
   <TD ALIGN=RIGHT>16,726,587</TD><TD ALIGN=RIGHT>%&nbsp;2.58</TD>
   <TD ALIGN=CENTER>Stickleback</TD><TD ALIGN=RIGHT>1.923%</TD>
   <TD ALIGN=CENTER>Stickleback</TD><TD ALIGN=RIGHT>1.923%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>unknown</TD>
<TR>
  <TD ALIGN=CENTER>unknown</TD></TR>
  <TH ALIGN=RIGHT>43</TH><TH ALIGN=RIGHT>oryLat2</TH><TH ALIGN=RIGHT>7,189</TH>
<TR><TH ALIGN=RIGHT>43</TH><TH ALIGN=RIGHT>oryLat2</TH><TH ALIGN=RIGHT>7,189</TH>
   <TD ALIGN=RIGHT>869,000,216</TD><TD ALIGN=RIGHT>700,386,597</TD>
   <TD ALIGN=RIGHT>869,000,216</TD><TD ALIGN=RIGHT>700,386,597</TD>
   <TD ALIGN=RIGHT>168,613,619</TD><TD ALIGN=RIGHT>%&nbsp;33.09</TD>
   <TD ALIGN=RIGHT>168,613,619</TD><TD ALIGN=RIGHT>%&nbsp;33.09</TD>
   <TD ALIGN=CENTER>Medaka</TD><TD ALIGN=RIGHT>1.829%</TD>
   <TD ALIGN=CENTER>Medaka</TD><TD ALIGN=RIGHT>1.829%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>5000</TD>
<TR>
  <TD ALIGN=CENTER>loose</TD></TR>
  <TH ALIGN=RIGHT>44</TH><TH ALIGN=RIGHT>petMar1</TH><TH ALIGN=RIGHT>108,241</TH>
<TR><TH ALIGN=RIGHT>44</TH><TH ALIGN=RIGHT>petMar1</TH><TH ALIGN=RIGHT>108,241</TH>
 
   <TD ALIGN=RIGHT>1,027,258,967</TD><TD ALIGN=RIGHT>831,696,438</TD>
   <TD ALIGN=RIGHT>1,027,258,967</TD><TD ALIGN=RIGHT>831,696,438</TD>
   <TD ALIGN=RIGHT>195,562,529</TD><TD ALIGN=RIGHT>%&nbsp;40.67</TD>
   <TD ALIGN=RIGHT>195,562,529</TD><TD ALIGN=RIGHT>%&nbsp;40.67</TD>
   <TD ALIGN=CENTER>Lamprey</TD><TD ALIGN=RIGHT>1.251%</TD>
   <TD ALIGN=CENTER>Lamprey</TD><TD ALIGN=RIGHT>1.251%</TD>
</TR>
  <TD ALIGN=CENTER>MafNet</TD><TD ALIGN=RIGHT>5000</TD>
 
  <TD ALIGN=CENTER>loose</TD></TR>
</TABLE>
</TABLE>
[[Category:Comparative Genomics]]

Latest revision as of 22:44, 18 May 2011

see also

statistics collected from UCSC 2bit files

  • N bases == unknown bases in the assembly marked by 'N'
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
  • % of hg18 matched (chainLink table) == featureBits hg18 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order
count
ucsc
db name
chrom
count
total
size
non-N
bases
N base
count
% masked common name % of hg18
matched
(chainLink table)
alignment type chain
minScore
chain
linearGap
01hg1849 3,107,677,2732,881,421,696 226,255,577% 48.85 HumanN/A N/A10000 medium
02panTro252 3,350,447,5122,909,246,738 441,200,774% 48.90 Chimp94.888% SyntenicNetunknown unknown
03gorGor1609,861 2,323,645,8952,043,974,660 279,671,235% 47.27 Gorilla61.731% RecipBest3000 medium
04ponAbe255 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan92.892% SyntenicNet3000 medium
05rheMac222 2,864,106,0712,646,668,809 217,437,262% 48.28 Rhesus85.552% SyntenicNetunknown unknown
06calJac149,724 3,029,401,8402,929,124,957 100,276,883% 47.50 Marmoset78.351% RecipBest3000 medium
07tarSyr1656,709 3,179,905,1322,768,536,343 411,368,789% 41.75 Tarsier47.999% RecipBest3000 medium
08otoGar1120,882 3,420,058,8641,969,052,059 1,451,006,805% 34.89 Bushbaby44.638% RecipBest3000 medium
09micMur1185,042 2,902,270,7361,852,394,361 1,049,876,375% 37.31 Mouse lemur46.445% RecipBest3000 medium
10tupBel1150,851 3,660,774,9572,137,225,476 1,523,549,481% 20.43 TreeShrew37.348% RecipBestunknown loose
11mm935 2,725,765,4812,620,345,972 105,419,509% 44.09 Mouse35.201% SyntenicNet3000 medium
12rn445 2,834,127,2932,566,294,765 267,832,528% 44.29 Rat32.893% SyntenicNetunknown medium
13dipOrd1210,053 2,158,502,0981,844,961,421 313,540,677% 28.28 Kangaroo rat27.282% RecipBest3000 medium
14cavPor33,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea Pig43.971% SyntenicNet3000 medium
15speTri1160,889 3,488,768,5921,913,367,893 1,575,400,699% 26.90 Squirrel35.828% RecipBest3000 medium
16oryCun1215,471 3,464,410,0392,076,044,328 1,388,365,711% 37.44 Rabbit34.015% RecipBest3000 medium
17ochPri2187,558 3,445,784,3541,923,624,051 1,522,160,303% 11.44 Pika27.974% RecipBest3000 medium
18sorAra1262,057 2,936,119,0081,832,864,697 1,103,254,311% 39.07 Shrew20.056% RecipBest3000 medium
19eriEur1379,802 3,367,787,3582,133,134,836 1,234,652,522% 50.89 Hedgehog19.622% RecipBest3000 medium
20felCat3217,790 4,045,535,3221,642,698,377 2,402,836,945% 37.66 Cat35.888% RecipBest3000 medium
21canFam241 2,531,673,9532,384,996,543 146,677,410% 40.63 Dog52.915% SyntenicNet3000 medium
22equCab234 2,484,532,0622,428,790,173 55,741,889% 40.97 Horse57.162% SyntenicNet3000 medium
23pteVam196,944 1,996,076,4101,839,436,660 156,639,750% 31.75 Megabat45.502% RecipBest3000 medium
24myoLuc1193,323 2,850,051,5591,673,855,868 1,176,195,691% 24.90 Microbat33.044% RecipBest3000 medium
25turTru1116,467 2,519,048,4862,298,444,090 220,604,396% 43.86 Dolphin48.537% RecipBest3000 medium
26bosTau411,900 2,917,974,5302,731,813,236 186,161,294% 46.89 Cow46.689% SyntenicNet3000 medium
27vicPac1298,413 2,962,253,6081,922,910,435 1,039,343,173% 32.24 Alpaca39.531% RecipBest3000 medium
28dasNov2292,141 4,813,823,5622,371,493,872 2,442,329,690% 37.23 Armadillo33.663% RecipBest3000 medium
29choHof1481,259 2,458,927,6202,060,419,685 398,507,935% 35.67 Sloth34.463% RecipBest3000 medium
30echTel1325,491 3,823,724,7282,111,581,369 1,712,143,359% 13.84 Tenrec23.645% RecipBest5000 loose
31loxAfr2225,378 4,170,414,8522,444,975,542 1,725,439,310% 44.13 Elephant35.204% RecipBest3000 medium
32proCap1295,006 2,985,258,9992,407,847,681 577,411,318% 28.11 Rock hyrax30.935% RecipBest3000 medium
33monDom410 3,605,614,6493,501,643,220 103,971,429% 55.69 Opossum12.385% SyntenicNet5000 loose
34ornAna1201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus7.870% RecipBestunknown loose
35galGal357 1,100,480,4411,042,583,135 57,897,306% 9.85 Chicken3.589% SyntenicNet5000 loose
36taeGut170 1,233,186,3411,222,864,691 10,321,650% 20.42 Zebra finch3.503% SyntenicNet5000 loose
37anoCar17,233 1,781,602,8991,741,478,929 40,123,970% 42.56 Lizard4.774% RecipBest5000 loose
38xenTro219,759 1,513,925,4921,359,400,017 154,525,475% 19.65 X. tropicalis2.623% MafNet5000 loose
39danRer55,036 1,440,582,3081,435,595,672 4,986,636% 49.53 Zebrafish2.565% MafNet5000 loose
40tetNig127 402,240,326312,394,419 89,845,907% 4.34 Tetraodon2.001% MafNet5000 loose
41fr22 400,525,790351,212,245 49,313,545% 19.01 Fugu1.766% MafNet2000 loose
42gasAcu123 463,354,448446,627,861 16,726,587% 2.58 Stickleback1.923% MafNetunknown unknown
43oryLat27,189 869,000,216700,386,597 168,613,619% 33.09 Medaka1.829% MafNet5000 loose
44petMar1108,241 1,027,258,967831,696,438 195,562,529% 40.67 Lamprey1.251% MafNet5000 loose