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==User Name Choice==
When considering your choice of a user name for a new account, please note the "User Listing" link in the navigation menu to the left. Your user name will be public on this listing.  Your actual identity will remain private unless you reveal it on your user name home page. Other users will be able to email you without you revealing your email address. Therefore, your user name can be obscure if you so desire.  Transparent openness is probably more useful.
 
==Setting User Preferences==


<h4>User Name Choice</h4>
You can change many settings from the "my preferences" link, found at the top of each pageYou should verify that all the namespaces are checked under the "search" tab on your preferences page.  This is also where you set your email notification policy to enable email from other genomewiki users.
When considering your choice of a user name for a new account,
please note the "User Listing" link in the navigation menu to the left.
Your user name will be public on this listingYour actual identity
will remain private unless you reveal it on your user name home
page.  Other user's will be able to email you without you revealing
your email address.  Therefore, your user name can be obscure
if you so desire.  Transparent openness is probably more useful.
 
<h4>Setting User Preferences</h4>


Note the "my preferences" link on the very top line of text on any page, after
==Creating new pages==
your "my talk" linkClick into that where you can change your user settings.  You should verify that all the namespaces are checked under the "search" tab on your preferences page.  This is also where
To create a new page, enter the new title for the page into the search box and press the ''Go'' buttonIf a page by that title does not exist, the system will display a page indicating that no such page exists and it will provide a link to enter the editor to create content for the new page.
you set your email notification policy to enable email from other genomewiki users.


<h4>Creating new pages</h4>
Alternatively, create a link to a new page from an existing page, using the double bracket notation <nowiki>[[Your New Page|Optional Title For The Link]]</nowiki>, and then click on that link.  The editor for the new page will be entered directly where you can begin adding the new contents.
Create new pages simply by entering the new title for the page into the search box and press the <em>Go</em> button.  If a page by that title does not exist, the system will display a page indicating that no such page exists and it will provide a link to enter the editor to create content for the new page.


Alternatively, create a link to a new page from an existing page, using the double bracket notation &#91;&#91;Your_New_Page Title Here&#93;&#93;, and then click on that link.  The editor for the new page will be entered directly where you can begin adding the new contents.
'''''Remember to save your page contents after a preview, otherwise you will lose your edits.'''''


<B>Remember to save your page contents after a preview, otherwise you will lose your edits.</B>
'''CASE SENSITIVITY''': The wiki software will enforce case sensitivity on page names after the first letter.  The first letter of a page name is case-insensitive and will appear as upper case.  Letters following the first are case sensitive and will appear as entered.  Therefore, it becomes way too easy to create pages with the exact same name, differing only in case.  Beware of this situation.


<B>CASE SENSITIVITY</B> The wiki software will enforce case sensitivity on page names after the first letterThe first letter of a page name is case-insensitive and will appear as upper case.  Letters following the first are case sensitive and will appear as enteredTherefore, it becomes way too easy to create pages
==Discussion Pages==
with the exact same name, differing only in case.  Beware of this situation.
Each article in the wiki has a parallel "discussion" page, accessed via the "discussion" tab at the top of the pageThis discussion page is used for note taking and discussion about that page's contents between the contributors to that pageThe discussion page can be used in a blog like fashion to maintain a background commentary to the construction process of the actual article page.


<h4>Discussion Pages</h4>
==Creating links in your pages==
Please note, each page in the wiki actually behaves like two pages in one.  There is a primary "article" page which is what you see when you create a new page and add contentsAt the same time there is a parallel "discussion" page accessed via the "discussion" tab at the top of the page.  This discussion page is used for note taking and discussion about that page's contents between the contributors to that page.  The discussion page can be used in a blog like fashion to maintain a background commentary to the construction process of the actual article page.
;For internal links to pages within this wiki:
:In your page text, enclose the title of the page you want to link to in double square brackets: <nowiki>[[Main Page]]</nowiki>, which appears as [[Main Page]]You can also provide an optional title for the link with the "pipe" character: <nowiki>[[Main Page|Optional title here]]</nowiki>, which appears as [[Main Page|Optional title here]].


<h4>Creating URL Links from your pages</h4>
;For external links
For internal links to pages within this Wiki:
:In your page text, put the full URL for the link (including "http://") in single square brackets: <nowiki>[http://genome.ucsc.edu]</nowiki>, which appears as [http://genome.ucsc.edu].  You can also provide an optional title for the link by leaving a space after the end of the URL: <nowiki>[http://genome.ucsc.edu UCSC Genome Browser Home]</nowiki>, which appears as [http://genome.ucsc.edu UCSC Genome Browser Home].
In your page text, enclose the title of the page you want to
link to in double square brackets: &#91;&#91;Main Page&#93;&#93; which
appears as [[Main Page]].


For external links, place the http:&#47;&#47; URL in your page with
==Organizing Content==
the title following, highlight the whole thing, and then press the
The primary method of organizing content in this wiki is to place your page into one or more categories.  To add your page to a category, place a category tag at the end of your page contents:
fourth button from the left at the top of the editor bar, looks like
<nowiki>[[Category:</nowiki><em>Category name</em><nowiki>]]</nowiki>
a little world image.  It adds single &#91;square brackets&#93; around
your URL which causes it to be an external reference.


<h4>Organizing Content</h4>
(Technically, you can put a category tag anywhere in the page, but the usual convention is to put it at the end.  This makes it easier for others to edit the page itself.)
The primary method of organizing content in this wiki is to place your page into one or more catagories.  Thus, your page becomes part of a collection of pages all related to the same category.  To add your page to a category, place a category tag at the end of your page contents ''(end of page by convention only, it can actually be anywhere within the page)''.  The category tag looks like:


&#91;&#91;Category:&lt;<em>category type here</em>&gt;&#93;&#93;
See [[Special:Categories]] for a list of existing categories on this wiki.  The name to enter as "''Category name''" is exactly what appears in the listing.


See also: [[Special:Categories]] for a list of existing categories.  The name to enter as &lt;<em>category type here</em>&gt; is exactly as the names appear in the listing.
To create a new category, simply add a page to it &mdash; the wiki software will do the rest.  Category pages should be edited to have a one line description and placed into an appropriate higher-level category.


New categories are created simply by creating a reference to them.  They should be edited to have a one line description and placed into an appropriate higher level category.
Pages can be in more than one category, but you should avoid placing a page in both a category and a subcategory.


Pages can be in more than one category, but you should avoid placing a page
To see how Wikipedia handles categorization, please visit [http://en.wikipedia.org/wiki/Wikipedia:Categorization Wikipedia categorization].
in both a category and a subcategory.  See also: [[http://en.wikipedia.org/wiki/Wikipedia:Categorization Wikipedia categorization]]


<h4> Entering Math </h4>
==Entering Math==


To display math equations, you can use TeX formatting:
To display math equations, you can use TeX formatting:
Line 61: Line 47:
</math>
</math>


See also: [http://meta.wikimedia.org/wiki/Help:Formula Math Markup]
See also: [http://meta.wikimedia.org/wiki/Formula Help:Displaying a formula on meta.wikimedia.org]


<h4>Restricted Pages</h4>
==Restricted Pages==
We do not have restricted pages here for specific work groups.  Everything created here is open content readable by all viewers.  And due to the history mechanism behind every page, no content can be effectively deleted entirely.
We do not have restricted pages here for specific work groups.  Everything created here is open content readable by all viewers.  And due to the history mechanism behind every page, no content can be effectively deleted entirely.


<h4>External Help links:</h4>
==External Help links==


##[http://meta.wikimedia.org/wiki/Help:Editing MediaWiki: Editing Wiki Pages]
##[http://meta.wikimedia.org/wiki/Help:Editing MediaWiki: Editing Wiki Pages]

Latest revision as of 14:14, 1 June 2011

User Name Choice

When considering your choice of a user name for a new account, please note the "User Listing" link in the navigation menu to the left. Your user name will be public on this listing. Your actual identity will remain private unless you reveal it on your user name home page. Other users will be able to email you without you revealing your email address. Therefore, your user name can be obscure if you so desire. Transparent openness is probably more useful.

Setting User Preferences

You can change many settings from the "my preferences" link, found at the top of each page. You should verify that all the namespaces are checked under the "search" tab on your preferences page. This is also where you set your email notification policy to enable email from other genomewiki users.

Creating new pages

To create a new page, enter the new title for the page into the search box and press the Go button. If a page by that title does not exist, the system will display a page indicating that no such page exists and it will provide a link to enter the editor to create content for the new page.

Alternatively, create a link to a new page from an existing page, using the double bracket notation [[Your New Page|Optional Title For The Link]], and then click on that link. The editor for the new page will be entered directly where you can begin adding the new contents.

Remember to save your page contents after a preview, otherwise you will lose your edits.

CASE SENSITIVITY: The wiki software will enforce case sensitivity on page names after the first letter. The first letter of a page name is case-insensitive and will appear as upper case. Letters following the first are case sensitive and will appear as entered. Therefore, it becomes way too easy to create pages with the exact same name, differing only in case. Beware of this situation.

Discussion Pages

Each article in the wiki has a parallel "discussion" page, accessed via the "discussion" tab at the top of the page. This discussion page is used for note taking and discussion about that page's contents between the contributors to that page. The discussion page can be used in a blog like fashion to maintain a background commentary to the construction process of the actual article page.

Creating links in your pages

For internal links to pages within this wiki
In your page text, enclose the title of the page you want to link to in double square brackets: [[Main Page]], which appears as Main Page. You can also provide an optional title for the link with the "pipe" character: [[Main Page|Optional title here]], which appears as Optional title here.
For external links
In your page text, put the full URL for the link (including "http://") in single square brackets: [http://genome.ucsc.edu], which appears as [1]. You can also provide an optional title for the link by leaving a space after the end of the URL: [http://genome.ucsc.edu UCSC Genome Browser Home], which appears as UCSC Genome Browser Home.

Organizing Content

The primary method of organizing content in this wiki is to place your page into one or more categories. To add your page to a category, place a category tag at the end of your page contents: [[Category:Category name]]

(Technically, you can put a category tag anywhere in the page, but the usual convention is to put it at the end. This makes it easier for others to edit the page itself.)

See Special:Categories for a list of existing categories on this wiki. The name to enter as "Category name" is exactly what appears in the listing.

To create a new category, simply add a page to it — the wiki software will do the rest. Category pages should be edited to have a one line description and placed into an appropriate higher-level category.

Pages can be in more than one category, but you should avoid placing a page in both a category and a subcategory.

To see how Wikipedia handles categorization, please visit Wikipedia categorization.

Entering Math

To display math equations, you can use TeX formatting:

<math> \sqrt{2}\approx 1.4 </math>

See also: Help:Displaying a formula on meta.wikimedia.org

Restricted Pages

We do not have restricted pages here for specific work groups. Everything created here is open content readable by all viewers. And due to the history mechanism behind every page, no content can be effectively deleted entirely.

External Help links

    1. MediaWiki: Editing Wiki Pages
    2. MediaWiki: WikiText Markup Examples
    3. MediaWiki: General Help Page
    4. MediaWiki: FAQ
    5. MediaWiki: Placing pages into catagories
    6. WikiPedia: Image link syntax
    7. MediaWiki: Math TeX markup syntax