Hg19 100way conservation alignment: Difference between revisions

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(correct links to the other 100way pages)
(updated status)
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   <TD>2013-03-22</TD><TD ALIGN=RIGHT>87.764%</TD>
   <TD>2013-03-22</TD><TD ALIGN=RIGHT>87.764%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000409795.1/ 06]</TH><TH>chlSab1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chlorocebus_sabaeus/Chlorocebus_sabeus_1.0/ Chlorocebus sabaeus]</TD><TD>green monkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD>
   <TD>12-Jun-2013 (GCA_000409795.1)</TD>
   <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
   <TD>Vervet Genomics Consortium/Chlorocebus_sabeus 1.0</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
   <TD ALIGN=RIGHT>2013-06-30</TD>
   <TD ALIGN=RIGHT>2011-12-30</TD>
   <TD ALIGN=RIGHT>2013-06-30</TD>
   <TD ALIGN=RIGHT>2012-01-03</TD>
   <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.446%</TD>
   <TD>2013-07-04</TD><TD ALIGN=RIGHT>82.859%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>macFas5</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca fascicularis]</TD><TD>crab-eating macaque</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>macFas5</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca fascicularis]</TD><TD>crab-eating macaque</TD>
Line 75: Line 75:
   <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD>
   <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.666%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
  <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
  <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
  <TD ALIGN=RIGHT>2011-12-30</TD>
  <TD ALIGN=RIGHT>2012-01-03</TD>
  <TD>2013-07-04</TD><TD ALIGN=RIGHT>82.859%</TD>
</TR><TR>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;Pham_1.0/papHam1)</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;Pham_1.0/papHam1)</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
Line 89: Line 82:
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>82.810%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>82.810%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000409795.1/ 09]</TH><TH>chlSab1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chlorocebus_sabaeus/Chlorocebus_sabeus_1.0/ Chlorocebus sabaeus]</TD><TD>green monkey</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Broad/saiBol1)</TD>
   <TD>12-Jun-2013 (GCA_000409795.1)</TD>
   <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
   <TD>Vervet Genomics Consortium/Chlorocebus_sabeus 1.0</TD>
   <TD ALIGN=RIGHT>2012-01-07</TD>
   <TD ALIGN=RIGHT>2013-06-30</TD>
   <TD ALIGN=RIGHT>2012-01-09</TD>
   <TD ALIGN=RIGHT>2013-06-30</TD>
   <TD>2013-06-30</TD><TD ALIGN=RIGHT>69.598%</TD>
   <TD>2013-06-30</TD><TD ALIGN=RIGHT>86.446%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
Line 102: Line 95:
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD>
   <TD>2010-02-11</TD><TD ALIGN=RIGHT>70.654%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
  <TD>Oct.&nbsp;2011&nbsp;(Broad/saiBol1)</TD>
  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
  <TD ALIGN=RIGHT>2012-01-07</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
  <TD>2013-06-30</TD><TD ALIGN=RIGHT>69.598%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
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   <TD>2013-07-06</TD><TD ALIGN=RIGHT>46.558%</TD>
   <TD>2013-07-06</TD><TD ALIGN=RIGHT>46.558%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ Ceratotherium<BR>simum]</TD><TD>White&nbsp;rhinoceros</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
   <TD>May&nbsp;2012&nbsp;(CerSimSim1.0/cerSim1)</TD>
  <TD>Nov.&nbsp;2011&nbsp;(Broad/speTri2)</TD>
  <TD>Broad Institute (GCA_000236235.1)</TD>
  <TD ALIGN=RIGHT>2012-03-14</TD>
  <TD ALIGN=RIGHT>2012-03-15</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 15]</TH><TH>jacJac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Jaculus jaculus]</TD><TD>lesser Egyptian jerboa</TD>
  <TD>31-May-2012 (GCA_000280705.1)</TD>
  <TD>Broad Institute/JacJac1.0</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD ALIGN=RIGHT>2013-07-15</TD>
  <TD>2013-07-16</TD><TD ALIGN=RIGHT>35.106%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 16]</TH><TH>micOch1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Microtus ochrogaster]</TD><TD>Prairie Vole</TD>
  <TD>31-Oct-2012 (GCA_000317375.1)</TD>
  <TD>Broad Institute/MicOch1.0</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD>2013-08-27</TD><TD ALIGN=RIGHT>32.285%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 17]</TH><TH>criGri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Cricetulus griseus]</TD><TD>Chinese Hamster</TD>
  <TD>12-Jul-2013 (GCA_000419365.1)</TD>
  <TD>Beijing Genomics Institution-shenzhen/C_griseus_v1.0</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 18]</TH><TH>mesAur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Mesocricetus auratus]</TD><TD>golden hamster</TD>
  <TD>29-Mar-2013 (GCA_000349665.1)</TD>
  <TD>Broad Institute/MesAur1.0</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
  <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
  <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
  <TD ALIGN=RIGHT>2012-02-06</TD>
  <TD ALIGN=RIGHT>2012-02-07</TD>
  <TD>2012-03-07</TD><TD ALIGN=RIGHT>35.249%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD>
  <TD>Mar.&nbsp;2012&nbsp;(RGSC&nbsp;5.0/rn5)</TD>
  <TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD>
  <TD ALIGN=RIGHT>2012-03-21</TD>
  <TD ALIGN=RIGHT>2012-03-21</TD>
  <TD>2012-06-27</TD><TD ALIGN=RIGHT>31.662%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 21]</TH><TH>octDeg1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Octodon degus]</TD><TD>brush-tailed rat</TD>
  <TD>13-Apr-2012 (GCA_000260255.1)</TD>
  <TD>Broad Institute/OctDeg1.0</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>2013-07-07</TD><TD ALIGN=RIGHT>41.385%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
  <TD>Jan.&nbsp;2012&nbsp;(Broad&nbsp;HetGla_female_1.0/hetGla2)</TD>
  <TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD>2013-07-17</TD><TD ALIGN=RIGHT>47.600%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>43.680%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla<BR>lanigera]</TD><TD>Chinchilla</TD>
   <TD>May&nbsp;2012&nbsp;&nbsp;(ChiLan1.0/chiLan1)</TD>
   <TD>Broad Institute</TD>
   <TD>Broad Institute</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
   <TD ALIGN=RIGHT>2012-07-28</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
   <TD ALIGN=RIGHT>2012-07-27</TD>
   <TD>2012-10-19</TD><TD ALIGN=RIGHT>58.103%</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>57.050%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>44.317%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Ochotona<BR>princeps]</TD><TD>Pika</TD>
  <TD>May&nbsp;2012&nbsp;(OchPri3.0/ochPri3)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2013-06-20</TD>
  <TD ALIGN=RIGHT>2013-06-18</TD>
  <TD>2013-06-18</TD><TD ALIGN=RIGHT>34.676%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 16]</TH><TH>camFer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Camelus ferus]</TD><TD>Bactrian camel</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TD>25-Dec-2011 (GCA_000311805.1)</TD>
   <TD>Aug.&nbsp;2011&nbsp;(SGSC&nbsp;Sscrofa10.2/susScr3)</TD>
   <TD>The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1</TD>
   <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>50.419%</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
   <TD>Mar.&nbsp;2013&nbsp;(Vicugna_pacos-2.0.1/vicPac2)</TD>
   <TD>Mar.&nbsp;2013&nbsp;(Vicugna_pacos-2.0.1/vicPac2)</TD>
   <TD>Broad Institute</TD>
   <TD>Broad Institute</TD>
Line 145: Line 222:
   <TD>2013-06-18</TD><TD ALIGN=RIGHT>50.193%</TD>
   <TD>2013-06-18</TD><TD ALIGN=RIGHT>50.193%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 18]</TH><TH>orcOrc1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Orcinus orca]</TD><TD>Killer whale</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 29]</TH><TH>camFer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Camelus ferus]</TD><TD>Bactrian camel</TD>
   <TD>31-Jan-2013 (GCA_000331955.1)</TD>
   <TD>25-Dec-2011 (GCA_000311805.1)</TD>
   <TD>Marine mammals/Oorc_1.1</TD>
   <TD>The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1</TD>
   <TD ALIGN=RIGHT>2013-08-20</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD ALIGN=RIGHT>2013-08-20</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
   <TD>2013-08-01</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>50.419%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Ttru_1.4/turTru2)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Ttru_1.4/turTru2)</TD>
   <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD>
   <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD>
Line 159: Line 236:
   <TD>2013-08-20</TD><TD ALIGN=RIGHT>51.158%</TD>
   <TD>2013-08-20</TD><TD ALIGN=RIGHT>51.158%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Mustela<BR>putorius<BR>furo]</TD><TD>Ferret&nbsp;</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 31]</TH><TH>orcOrc1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Orcinus orca]</TD><TD>Killer whale</TD>
   <TD>Apr.&nbsp;2011&nbsp;(MusPutFur1.0/musFur1)</TD>
   <TD>31-Jan-2013 (GCA_000331955.1)</TD>
   <TD>Ferret Genome Sequencing Consortium</TD>
   <TD>Marine mammals/Oorc_1.1</TD>
   <TD ALIGN=RIGHT>2013-03-05</TD>
   <TD ALIGN=RIGHT>2013-08-20</TD>
   <TD ALIGN=RIGHT>2013-03-05</TD>
   <TD ALIGN=RIGHT>2013-08-20</TD>
   <TD>2013-07-12</TD><TD ALIGN=RIGHT>50.993%</TD>
   <TD>2013-08-01</TD><TD ALIGN=RIGHT>52.072%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 21]</TH><TH>oryAfe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Orycteropus afer]</TD><TD>Aardvark</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 32]</TH><TH>panHod1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Pantholops hodgsonii]</TD><TD>Tibetan antelope</TD>
   <TD>24-May-2012 (GCA_000298275.1)</TD>
   <TD>28-May-2013 (GCA_000400835.1)</TD>
   <TD>Broad Institute/OryAfe1.0</TD>
   <TD>BGI/PHO1.0</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>41.668%</TD>
   <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.863%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TD>Nov.&nbsp;2011&nbsp;(Broad/speTri2)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Btau_4.6.1/bosTau7)</TD>
   <TD>Broad Institute (GCA_000236235.1)</TD>
   <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
   <TD ALIGN=RIGHT>2012-03-14</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-03-15</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-01-23</TD><TD ALIGN=RIGHT>46.971%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 23]</TH><TH>pteAle1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Pteropus alecto]</TD><TD>Black Flying-fox</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Ovis<BR>aries]</TD><TD>Sheep</TD>
   <TD>06-Aug-2012 (GCA_000325575.1)</TD>
   <TD>Aug.&nbsp;2012&nbsp;(ISGC&nbsp;Oar_v3.1/oviAri3)</TD>
   <TD>BGI/ASM32557v1</TD>
   <TD>International Sheep Genome Consortium</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-06-10</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-06-09</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-06-26</TD><TD ALIGN=RIGHT>46.833%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 35]</TH><TH>capHir1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Capra hircus]</TD><TD>domestic goat</TD>
   <TD>Aug.&nbsp;2011&nbsp;(SGSC&nbsp;Sscrofa10.2/susScr3)</TD>
   <TD>31-May-2012 (GCA_000317765.1)</TD>
   <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD>
   <TD>International Goat Genome Consortium/CHIR_1.0</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.498%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Broad&nbsp;v1.0/triMan1)</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2013-07-11</TD><TD ALIGN=RIGHT>46.580%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>57.050%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 26]</TH><TH>octDeg1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Octodon degus]</TD><TD>brush-tailed rat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ Ceratotherium<BR>simum]</TD><TD>White&nbsp;rhinoceros</TD>
  <TD>13-Apr-2012 (GCA_000260255.1)</TD>
   <TD>May&nbsp;2012&nbsp;(CerSimSim1.0/cerSim1)</TD>
  <TD>Broad Institute/OctDeg1.0</TD>
   <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD>2013-07-07</TD><TD ALIGN=RIGHT>41.385%</TD>
   <TD>2012-10-19</TD><TD ALIGN=RIGHT>58.103%</TD>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
  <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>2012-05-02</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>45.414%</TD>
</TR><TR>
  <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>46.636%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD>
   <TD>Sep.&nbsp;2011&nbsp;(ICGSC&nbsp;Felis_catus&nbsp;6.2/felCat5)</TD>
   <TD>Sep.&nbsp;2011&nbsp;(ICGSC&nbsp;Felis_catus&nbsp;6.2/felCat5)</TD>
   <TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD>
   <TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD>
Line 229: Line 292:
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>52.426%</TD>
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>52.426%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Mustela<BR>putorius<BR>furo]</TD><TD>Ferret&nbsp;</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
   <TD>Apr.&nbsp;2011&nbsp;(MusPutFur1.0/musFur1)</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
   <TD>Ferret Genome Sequencing Consortium</TD>
   <TD ALIGN=RIGHT>2010-02-03</TD>
   <TD ALIGN=RIGHT>2013-03-05</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD ALIGN=RIGHT>2013-03-05</TD>
   <TD>2010-02-04</TD><TD ALIGN=RIGHT>50.022%</TD>
   <TD>2013-07-12</TD><TD ALIGN=RIGHT>50.993%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
   <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
   <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
Line 243: Line 306:
   <TD>2012-07-04</TD><TD ALIGN=RIGHT>51.848%</TD>
   <TD>2012-07-04</TD><TD ALIGN=RIGHT>51.848%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 32]</TH><TH>chrAsi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Chrysochloris asiatica]</TD><TD>Cape golden mole</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
  <TD>01-Aug-2012 (GCA_000296735.1)</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
  <TD>Broad Institute/ChrAsi1.0</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2010-02-03</TD>
  <TD ALIGN=RIGHT>2013-07-07</TD>
  <TD>2013-07-09</TD><TD ALIGN=RIGHT>34.209%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD>Dec.&nbsp;2011&nbsp;(Baylor/dasNov3)</TD>
  <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
  <TD ALIGN=RIGHT>2012-04-13</TD>
  <TD>2013-07-09</TD><TD ALIGN=RIGHT>46.571%</TD>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
  <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
  <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>44.317%</TD>
   <TD>2010-02-04</TD><TD ALIGN=RIGHT>50.022%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 35]</TH><TH>myoDav1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ Myotis Davidii]</TD><TD>David's Myotis (bat)</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 42]</TH><TH>odoRosDiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Odobenus rosmarus divergens]</TD><TD>Pacific walrus</TD>
  <TD>17-Aug-2012 (GCA_000327345.1)</TD>
   <TD>16-Jan-2013 (GCA_000321225.1)</TD>
  <TD>BGI/ASM32734v1</TD>
   <TD>Marine mammals/Oros_1.0</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>53.559%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 36]</TH><TH>panHod1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Pantholops hodgsonii]</TD><TD>Tibetan antelope</TD>
   <TD>28-May-2013 (GCA_000400835.1)</TD>
   <TD>BGI/PHO1.0</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.863%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 37]</TH><TH>lepWed1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Leptonychotes weddellii]</TD><TD>Weddell seal</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 43]</TH><TH>lepWed1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Leptonychotes weddellii]</TD><TD>Weddell seal</TD>
   <TD>29-Mar-2013 (GCA_000349705.1)</TD>
   <TD>29-Mar-2013 (GCA_000349705.1)</TD>
   <TD>Broad Institute/LepWed1.0</TD>
   <TD>Broad Institute/LepWed1.0</TD>
Line 285: Line 327:
   <TD>2013-07-12</TD><TD ALIGN=RIGHT>52.424%</TD>
   <TD>2013-07-12</TD><TD ALIGN=RIGHT>52.424%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 38]</TH><TH>odoRosDiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Odobenus rosmarus divergens]</TD><TD>Pacific walrus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 44]</TH><TH>pteAle1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Pteropus alecto]</TD><TD>Black Flying-fox</TD>
   <TD>16-Jan-2013 (GCA_000321225.1)</TD>
   <TD>06-Aug-2012 (GCA_000325575.1)</TD>
   <TD>Marine mammals/Oros_1.0</TD>
   <TD>BGI/ASM32557v1</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-07-12</TD>
  <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>2013-07-13</TD><TD ALIGN=RIGHT>53.559%</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
  <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>2012-05-02</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>45.414%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 46]</TH><TH>myoDav1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ Myotis Davidii]</TD><TD>David's Myotis (bat)</TD>
  <TD>17-Aug-2012 (GCA_000327345.1)</TD>
  <TD>BGI/ASM32734v1</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/614 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/614 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
   <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
   <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
   <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
   <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
Line 299: Line 355:
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 40]</TH><TH>eptFus1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Eptesicus fuscus]</TD><TD>big brown bat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 48]</TH><TH>eptFus1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Eptesicus fuscus]</TD><TD>big brown bat</TD>
   <TD>25-Jul-2012 (GCA_000308155.1)</TD>
   <TD>25-Jul-2012 (GCA_000308155.1)</TD>
   <TD>Broad Institute/EptFus1.0</TD>
   <TD>Broad Institute/EptFus1.0</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Btau_4.6.1/bosTau7)</TD>
   <TD>May&nbsp;2012&nbsp;(EriEur2.0/eriEur2)</TD>
   <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
   <TD>Broad Institute EriEur2.0</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2013-06-12</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD ALIGN=RIGHT>2013-06-07</TD>
   <TD>2012-01-23</TD><TD ALIGN=RIGHT>46.971%</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>26.149%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 42]</TH><TH>capHir1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Capra hircus]</TD><TD>domestic goat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TD>31-May-2012 (GCA_000317765.1)</TD>
   <TD>Aug.&nbsp;2008&nbsp;(Broad/sorAra2)</TD>
   <TD>International Goat Genome Consortium/CHIR_1.0</TD>
   <TD>Broad Institute SorAra2.0</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-05-29</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-05-29</TD>
   <TD>2013-07-17</TD><TD ALIGN=RIGHT>46.498%</TD>
   <TD>2013-06-18</TD><TD ALIGN=RIGHT>27.681%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Ovis<BR>aries]</TD><TD>Sheep</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 51]</TH><TH>conCri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Condylura cristata]</TD><TD>Star-nosed mole</TD>
   <TD>Aug.&nbsp;2012&nbsp;(ISGC&nbsp;Oar_v3.1/oviAri3)</TD>
   <TD>14-Mar-2012 (GCA_000260355.1)</TD>
   <TD>International Sheep Genome Consortium</TD>
   <TD>Broad Institute/ConCri1.0</TD>
   <TD ALIGN=RIGHT>2013-06-10</TD>
   <TD ALIGN=RIGHT>2013-07-09</TD>
   <TD ALIGN=RIGHT>2013-06-09</TD>
   <TD ALIGN=RIGHT>2013-07-09</TD>
   <TD>2013-06-26</TD><TD ALIGN=RIGHT>46.833%</TD>
   <TD>2013-07-10</TD><TD ALIGN=RIGHT>37.034%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
   <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TD>Jan.&nbsp;2012&nbsp;(Broad&nbsp;HetGla_female_1.0/hetGla2)</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2013-07-17</TD><TD ALIGN=RIGHT>47.600%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>46.636%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 45]</TH><TH>eleEdw1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Elephantulus edwardii]</TD><TD>Cape elephant shrew</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 53]</TH><TH>eleEdw1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Elephantulus edwardii]</TD><TD>Cape elephant shrew</TD>
   <TD>01-Aug-2012 (GCA_000299155.1)</TD>
   <TD>01-Aug-2012 (GCA_000299155.1)</TD>
   <TD>Broad Institute/EleEdw1.0</TD>
   <TD>Broad Institute/EleEdw1.0</TD>
Line 341: Line 397:
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>27.675%</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>27.675%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 46]</TH><TH>jacJac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Jaculus jaculus]</TD><TD>lesser Egyptian jerboa</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 54]</TH><TH>chrAsi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Chrysochloris asiatica]</TD><TD>Cape golden mole</TD>
   <TD>31-May-2012 (GCA_000280705.1)</TD>
   <TD>01-Aug-2012 (GCA_000296735.1)</TD>
   <TD>Broad Institute/JacJac1.0</TD>
   <TD>Broad Institute/ChrAsi1.0</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2013-07-15</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD>2013-07-16</TD><TD ALIGN=RIGHT>35.106%</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>34.209%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla<BR>lanigera]</TD><TD>Chinchilla</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 55]</TH><TH>oryAfe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Orycteropus afer]</TD><TD>Aardvark</TD>
   <TD>May&nbsp;2012&nbsp;&nbsp;(ChiLan1.0/chiLan1)</TD>
   <TD>24-May-2012 (GCA_000298275.1)</TD>
   <TD>Broad Institute</TD>
   <TD>Broad Institute/OryAfe1.0</TD>
   <TD ALIGN=RIGHT>2012-07-28</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD ALIGN=RIGHT>2012-07-27</TD>
   <TD ALIGN=RIGHT>2013-07-07</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>41.668%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>43.680%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 49]</TH><TH>conCri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Condylura cristata]</TD><TD>Star-nosed mole</TD>
  <TD>14-Mar-2012 (GCA_000260355.1)</TD>
  <TD>Broad Institute/ConCri1.0</TD>
  <TD ALIGN=RIGHT>2013-07-09</TD>
  <TD ALIGN=RIGHT>2013-07-09</TD>
  <TD>2013-07-10</TD><TD ALIGN=RIGHT>37.034%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Ochotona<BR>princeps]</TD><TD>Pika</TD>
  <TD>May&nbsp;2012&nbsp;(OchPri3.0/ochPri3)</TD>
  <TD>Broad Institute</TD>
  <TD ALIGN=RIGHT>2013-06-20</TD>
  <TD ALIGN=RIGHT>2013-06-18</TD>
  <TD>2013-06-18</TD><TD ALIGN=RIGHT>34.676%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
  <TD>May&nbsp;2012&nbsp;(EriEur2.0/eriEur2)</TD>
  <TD>Broad Institute EriEur2.0</TD>
  <TD ALIGN=RIGHT>2013-06-12</TD>
  <TD ALIGN=RIGHT>2013-06-07</TD>
  <TD>2013-07-09</TD><TD ALIGN=RIGHT>26.149%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
   <TD>Nov.&nbsp;2012&nbsp;(Broad/echTel2)</TD>
   <TD>Nov.&nbsp;2012&nbsp;(Broad/echTel2)</TD>
   <TD>Broad/EchTel2.0</TD>
   <TD>Broad/EchTel2.0</TD>
Line 390: Line 418:
   <TD>2013-06-17</TD><TD ALIGN=RIGHT>30.135%</TD>
   <TD>2013-06-17</TD><TD ALIGN=RIGHT>30.135%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Broad&nbsp;v1.0/triMan1)</TD>
   <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
   <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
   <TD ALIGN=RIGHT>2012-02-06</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2012-02-07</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
   <TD>2012-03-07</TD><TD ALIGN=RIGHT>35.249%</TD>
   <TD>2013-07-11</TD><TD ALIGN=RIGHT>46.580%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD>Mar.&nbsp;2012&nbsp;(RGSC&nbsp;5.0/rn5)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(Baylor/dasNov3)</TD>
   <TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD>
   <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD>
   <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
  <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
  <TD>2012-06-27</TD><TD ALIGN=RIGHT>31.662%</TD>
   <TD>2013-07-09</TD><TD ALIGN=RIGHT>46.571%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 55]</TH><TH>criGri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Cricetulus griseus]</TD><TD>Chinese Hamster</TD>
  <TD>12-Jul-2013 (GCA_000419365.1)</TD>
  <TD>Beijing Genomics Institution-shenzhen/C_griseus_v1.0</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 56]</TH><TH>mesAur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Mesocricetus auratus]</TD><TD>golden hamster</TD>
  <TD>29-Mar-2013 (GCA_000349665.1)</TD>
  <TD>Broad Institute/MesAur1.0</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 57]</TH><TH>micOch1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Microtus ochrogaster]</TD><TD>Prairie Vole</TD>
  <TD>31-Oct-2012 (GCA_000317375.1)</TD>
  <TD>Broad Institute/MicOch1.0</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Sorex<BR>araneus]</TD><TD>Shrew</TD>
  <TD>Aug.&nbsp;2008&nbsp;(Broad/sorAra2)</TD>
  <TD>Broad Institute SorAra2.0</TD>
  <TD ALIGN=RIGHT>2013-05-29</TD>
  <TD ALIGN=RIGHT>2013-05-29</TD>
  <TD>2013-06-18</TD><TD ALIGN=RIGHT>27.681%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/233 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
  <TD>Sep.&nbsp;2009&nbsp;(TWGS&nbsp;Meug_1.1/macEug2)</TD>
  <TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD>
  <TD ALIGN=RIGHT>2010-11-05</TD>
  <TD ALIGN=RIGHT>2011-12-02</TD>
   <TD>2013-07-11</TD><TD ALIGN=RIGHT>6.534%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/mammals/opossum 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TH>[http://www.broadinstitute.org/mammals/opossum 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
   <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
   <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
   <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
Line 446: Line 439:
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>14.358%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>14.358%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 61]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
Line 453: Line 446:
   <TD>2013-07-10</TD><TD ALIGN=RIGHT>7.414%</TD>
   <TD>2013-07-10</TD><TD ALIGN=RIGHT>7.414%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 62]</TH><TH>apaSpi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Apalone spinifera]</TD><TD>spiny softshell turtle</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 61]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
  <TD>03-May-2013 (GCA_000385615.1)</TD>
   <TD>Sep.&nbsp;2009&nbsp;(TWGS&nbsp;Meug_1.1/macEug2)</TD>
  <TD>WUGSC/ASM38561v1</TD>
   <TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2010-11-05</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2011-12-02</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2013-07-11</TD><TD ALIGN=RIGHT>6.534%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 63]</TH><TH>cheMyd1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Chelonia mydas]</TD><TD>green seaturtle</TD>
  <TD>18-Mar-2013 (GCA_000344595.1)</TD>
  <TD>BGI/CheMyd_1.0</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 64]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
   <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 65]</TH><TH>pelSin1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Pelodiscus sinensis]</TD><TD>Soft-shell Turtle</TD>
  <TD>01-Oct-2011 (GCA_000230535.1)</TD>
  <TD>Soft-shell Turtle Genome Consortium/PelSin_1.0</TD>
  <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 66]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 62]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>WUSTL version 5.0.1</TD>
   <TD>WUSTL version 5.0.1</TD>
Line 488: Line 460:
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>7.627%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 67]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ Alligator<BR>mississippiensis]</TD><TD>American&nbsp;alligator</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 63]</TH><TH>falChe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_cherrug/F_cherrug_v1.0/ Falco cherrug]</TD><TD>Saker falcon</TD>
  <TD>Aug.&nbsp;2012&nbsp;(allMis0.2/allMis1)</TD>
  <TD>International Crocodilian Genomes Working Group</TD>
  <TD ALIGN=RIGHT>2013-06-07</TD>
  <TD ALIGN=RIGHT>2012-08-28</TD>
  <TD>2013-06-28</TD><TD ALIGN=RIGHT>7.084%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 68]</TH><TH>anaPla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Anas platyrhynchos]</TD><TD>Mallard duck</TD>
  <TD>26-Apr-2013 (GCA_000355885.1)</TD>
  <TD>State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.509%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 69]</TH><TH>colLiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Columba_livia/Cliv_1.0/ Columba livia]</TD><TD>Rock pigeon</TD>
  <TD>11-Feb-2013 (GCA_000337935.1)</TD>
  <TD>BGI/Cliv_1.0</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.683%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/111 70]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
  <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
  <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.684%</TD>
</TR><TR>
  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 71]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
  <TD>May&nbsp;2010&nbsp;(Broad&nbsp;AnoCar2.0/anoCar2)</TD>
  <TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD>
  <TD ALIGN=RIGHT>2011-04-12</TD>
  <TD ALIGN=RIGHT>2011-04-13</TD>
  <TD>2011-04-19</TD><TD ALIGN=RIGHT>3.552%</TD>
</TR><TR>
  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 72]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
  <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
  <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
  <TD ALIGN=RIGHT>2010-11-04</TD>
  <TD ALIGN=RIGHT>2013-06-21</TD>
  <TD>2011-03-28</TD><TD ALIGN=RIGHT>2.645%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 73]</TH><TH>falChe1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_cherrug/F_cherrug_v1.0/ Falco cherrug]</TD><TD>Saker falcon</TD>
   <TD>05-Feb-2013 (GCA_000337975.1)</TD>
   <TD>05-Feb-2013 (GCA_000337975.1)</TD>
   <TD>BGI/F_cherrug_v1.0</TD>
   <TD>BGI/F_cherrug_v1.0</TD>
Line 537: Line 467:
   <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.812%</TD>
   <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.812%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 74]</TH><TH>falPer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_peregrinus/F_peregrinus_v1.0/ Falco peregrinus]</TD><TD>peregrine falcon</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 64]</TH><TH>falPer1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_peregrinus/F_peregrinus_v1.0/ Falco peregrinus]</TD><TD>peregrine falcon</TD>
   <TD>05-Feb-2013 (GCA_000337955.1)</TD>
   <TD>05-Feb-2013 (GCA_000337955.1)</TD>
   <TD>BGI/F_peregrinus_v1.0</TD>
   <TD>BGI/F_peregrinus_v1.0</TD>
Line 544: Line 474:
   <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.879%</TD>
   <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.879%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 75]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Amazona<BR>vittata]</TD><TD>Parrot</TD>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 65]</TH><TH>ficAlb2</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Ficedula albicollis]</TD><TD>Collared Flycatcher</TD>
  <TD>27-Jun-2013 (GCA_000247815.2)</TD>
  <TD>Uppsala University/FicAlb1.5</TD>
  <TD ALIGN=RIGHT>2013-06-29</TD>
  <TD ALIGN=RIGHT>2013-06-29</TD>
  <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.715%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 66]</TH><TH>zonAlb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ Zonotrichia albicollis]</TD><TD>White-throated sparrow</TD>
  <TD>30-Apr-2013 (GCA_000385455.1)</TD>
  <TD>White-throated sparrow consortium/ASM38545v1</TD>
  <TD ALIGN=RIGHT>2013-06-26</TD>
  <TD ALIGN=RIGHT>2013-06-26</TD>
  <TD>2013-06-26</TD><TD ALIGN=RIGHT>3.476%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 67]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Geospiza<BR>fortis]</TD><TD>Medium&nbsp;ground&nbsp;finch</TD>
  <TD>Apr.&nbsp;2012&nbsp;(GeoFor_1.0/geoFor1)</TD>
  <TD>Beijing Genomics Institute</TD>
  <TD ALIGN=RIGHT>2012-07-26</TD>
  <TD ALIGN=RIGHT>2012-07-26</TD>
  <TD>2012-07-29</TD><TD ALIGN=RIGHT>3.503%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 68]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
  <TD>Feb.&nbsp;2013&nbsp;(WashU&nbsp;taeGut324/taeGut2)</TD>
  <TD>Washington University School of Medicine</TD>
  <TD ALIGN=RIGHT>2013-06-05</TD>
  <TD ALIGN=RIGHT>2013-06-05</TD>
  <TD>2013-06-17</TD><TD ALIGN=RIGHT>5.321%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 69]</TH><TH>pseHum1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Pseudopodoces humilis]</TD><TD>Tibetan ground jay</TD>
  <TD>11-Jan-2013 (GCA_000331425.1)</TD>
  <TD>Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD ALIGN=RIGHT>2013-06-27</TD>
  <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.982%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 70]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
  <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
  <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.577%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 71]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Amazona<BR>vittata]</TD><TD>Parrot</TD>
   <TD>Jan.&nbsp;2013&nbsp;(AV1/amaVit1)</TD>
   <TD>Jan.&nbsp;2013&nbsp;(AV1/amaVit1)</TD>
   <TD>Puerto Rican Parrot Genome Project AV1</TD>
   <TD>Puerto Rican Parrot Genome Project AV1</TD>
Line 551: Line 523:
   <TD>2013-06-28</TD><TD ALIGN=RIGHT>3.298%</TD>
   <TD>2013-06-28</TD><TD ALIGN=RIGHT>3.298%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 76]</TH><TH>araMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Ara macao]</TD><TD>Scarlet Macaw</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 72]</TH><TH>araMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Ara macao]</TD><TD>Scarlet Macaw</TD>
   <TD>26-Jun-2013 (GCA_000400695.1)</TD>
   <TD>26-Jun-2013 (GCA_000400695.1)</TD>
   <TD>Texas A&M University/SMACv1.1</TD>
   <TD>Texas A&M University/SMACv1.1</TD>
Line 558: Line 530:
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>2.912%</TD>
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>2.912%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 77]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 73]</TH><TH>colLiv1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Columba_livia/Cliv_1.0/ Columba livia]</TD><TD>Rock pigeon</TD>
   <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
   <TD>11-Feb-2013 (GCA_000337935.1)</TD>
   <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
   <TD>BGI/Cliv_1.0</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.577%</TD>
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.683%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 78]</TH><TH>pseHum1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Pseudopodoces humilis]</TD><TD>Tibetan ground jay</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 74]</TH><TH>anaPla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Anas platyrhynchos]</TD><TD>Mallard duck</TD>
   <TD>11-Jan-2013 (GCA_000331425.1)</TD>
   <TD>26-Apr-2013 (GCA_000355885.1)</TD>
   <TD>Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0</TD>
   <TD>State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD ALIGN=RIGHT>2013-06-27</TD>
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.982%</TD>
  <TD>2013-06-27</TD><TD ALIGN=RIGHT>3.509%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/111 75]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
  <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
  <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.684%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 79]</TH><TH>zonAlb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ Zonotrichia albicollis]</TD><TD>White-throated sparrow</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 76]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
   <TD>30-Apr-2013 (GCA_000385455.1)</TD>
   <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
   <TD>White-throated sparrow consortium/ASM38545v1</TD>
   <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
   <TD ALIGN=RIGHT>2013-06-26</TD>
   <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>2013-06-26</TD>
   <TD ALIGN=RIGHT>2013-06-21</TD>
   <TD>2013-06-26</TD><TD ALIGN=RIGHT>3.476%</TD>
   <TD>2011-03-28</TD><TD ALIGN=RIGHT>2.645%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 80]</TH><TH>ficAlb2</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Ficedula albicollis]</TD><TD>Collared Flycatcher</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 77]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ Alligator<BR>mississippiensis]</TD><TD>American&nbsp;alligator</TD>
   <TD>27-Jun-2013 (GCA_000247815.2)</TD>
   <TD>Aug.&nbsp;2012&nbsp;(allMis0.2/allMis1)</TD>
   <TD>Uppsala University/FicAlb1.5</TD>
   <TD>International Crocodilian Genomes Working Group</TD>
   <TD ALIGN=RIGHT>2013-06-29</TD>
   <TD ALIGN=RIGHT>2013-06-07</TD>
   <TD ALIGN=RIGHT>2013-06-29</TD>
   <TD ALIGN=RIGHT>2012-08-28</TD>
   <TD>2013-06-29</TD><TD ALIGN=RIGHT>3.715%</TD>
   <TD>2013-06-28</TD><TD ALIGN=RIGHT>7.084%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 81]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Geospiza<BR>fortis]</TD><TD>Medium&nbsp;ground&nbsp;finch</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 78]</TH><TH>cheMyd1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Chelonia mydas]</TD><TD>green seaturtle</TD>
   <TD>Apr.&nbsp;2012&nbsp;(GeoFor_1.0/geoFor1)</TD>
   <TD>18-Mar-2013 (GCA_000344595.1)</TD>
   <TD>Beijing Genomics Institute</TD>
   <TD>BGI/CheMyd_1.0</TD>
   <TD ALIGN=RIGHT>2012-07-26</TD>
   <TD ALIGN=RIGHT>2013-08-26</TD>
   <TD ALIGN=RIGHT>2012-07-26</TD>
   <TD ALIGN=RIGHT>2013-08-26</TD>
   <TD>2012-07-29</TD><TD ALIGN=RIGHT>3.503%</TD>
   <TD>2013-08-28</TD><TD ALIGN=RIGHT>3.696%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 82]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 79]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TD>Feb.&nbsp;2013&nbsp;(WashU&nbsp;taeGut324/taeGut2)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
   <TD>Washington University School of Medicine</TD>
   <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
   <TD ALIGN=RIGHT>2013-06-05</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2013-06-05</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
   <TD>2013-06-17</TD><TD ALIGN=RIGHT>5.321%</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 83]</TH><TH>lepOcu1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Lepisosteus oculatus]</TD><TD>Spotted Gar</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 80]</TH><TH>pelSin1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Pelodiscus sinensis]</TD><TD>Soft-shell Turtle</TD>
   <TD>02-Dec-2011 (GCA_000242695.1)</TD>
   <TD>01-Oct-2011 (GCA_000230535.1)</TD>
   <TD>Broad Institute of MIT and Harvard/LepOcu1</TD>
   <TD>Soft-shell Turtle Genome Consortium/PelSin_1.0</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 84]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 81]</TH><TH>apaSpi1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Apalone spinifera]</TD><TD>spiny softshell turtle</TD>
  <TD>03-May-2013 (GCA_000385615.1)</TD>
  <TD>WUGSC/ASM38561v1</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD ALIGN=RIGHT>2013-08-26</TD>
  <TD>2013-08-28</TD><TD ALIGN=RIGHT>2.952%</TD>
</TR><TR>
  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 82]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
  <TD>May&nbsp;2010&nbsp;(Broad&nbsp;AnoCar2.0/anoCar2)</TD>
  <TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD>
  <TD ALIGN=RIGHT>2011-04-12</TD>
  <TD ALIGN=RIGHT>2011-04-13</TD>
  <TD>2011-04-19</TD><TD ALIGN=RIGHT>3.552%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 83]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
   <TD>Sep.&nbsp;2012&nbsp;(JGI&nbsp;7.0/xenTro7)</TD>
   <TD>Sep.&nbsp;2012&nbsp;(JGI&nbsp;7.0/xenTro7)</TD>
   <TD>US DOE Joint Genome Institute (JGI-PGF)</TD>
   <TD>US DOE Joint Genome Institute (JGI-PGF)</TD>
Line 614: Line 607:
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 85]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 84]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD>
   <TD>Aug.&nbsp;2011&nbsp;(Broad/latCha1)</TD>
   <TD>Aug.&nbsp;2011&nbsp;(Broad/latCha1)</TD>
   <TD>Broad LatCha1 (GCA_000225785.1)</TD>
   <TD>Broad LatCha1 (GCA_000225785.1)</TD>
Line 621: Line 614:
   <TD>2013-07-16</TD><TD ALIGN=RIGHT>2.749%</TD>
   <TD>2013-07-16</TD><TD ALIGN=RIGHT>2.749%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 86]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic&nbsp;cod</TD>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 85]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TD>May&nbsp;2010&nbsp;(Genofisk&nbsp;GadMor_May2010/gadMor1)</TD>
  <TD>Mar.&nbsp;2007&nbsp;(Genoscope&nbsp;8.0/tetNig2)</TD>
   <TD>Genofisk GadMor_May2010 (GCA_000231765.1)</TD>
  <TD>Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)</TD>
   <TD ALIGN=RIGHT>2011-12-29</TD>
  <TD ALIGN=RIGHT>2010-06-07</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.712%</TD>
</TR><TR>
  <TH>[http://www.fugu-sg.org/ 86]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
   <TD>2013-08-20</TD><TD ALIGN=RIGHT>1.703%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 87]</TH><TH>neoBri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Neolamprologus brichardi]</TD><TD>Princess of Burundi</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 87]</TH><TH>takFla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Takifugu_flavidus/version_1_of_Takifugu_flavidus_genome/ Takifugu flavidus]</TD><TD>Tawny puffer fish</TD>
   <TD>31-May-2011 (GCA_000239395.1)</TD>
   <TD>30-May-2013 (GCA_000400755.1)</TD>
   <TD>Broad Institute of MIT and Harvard/NeoBri1.0</TD>
   <TD>IOCAS/version 1 of Takifugu flavidus genome</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
Line 642: Line 642:
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 89]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 89]</TH><TH>neoBri1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Neolamprologus brichardi]</TD><TD>Princess of Burundi</TD>
  <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
   <TD>31-May-2011 (GCA_000239395.1)</TD>
  <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
   <TD>Broad Institute of MIT and Harvard/NeoBri1.0</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.916%</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 90]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TD>Mar.&nbsp;2007&nbsp;(Genoscope&nbsp;8.0/tetNig2)</TD>
   <TD>Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)</TD>
   <TD ALIGN=RIGHT>2010-06-07</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.712%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 91]</TH><TH>hapBur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Haplochromis_burtoni/AstBur1.0/ Haplochromis burtoni]</TD><TD>Burton's mouthbreeder</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 90]</TH><TH>hapBur1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Haplochromis_burtoni/AstBur1.0/ Haplochromis burtoni]</TD><TD>Burton's mouthbreeder</TD>
   <TD>12-Oct-2011 (GCA_000239415.1)</TD>
   <TD>12-Oct-2011 (GCA_000239415.1)</TD>
   <TD>Broad Institute of MIT and Harvard/AstBur1.0</TD>
   <TD>Broad Institute of MIT and Harvard/AstBur1.0</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 92]</TH><TH>takFla1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Takifugu_flavidus/version_1_of_Takifugu_flavidus_genome/ Takifugu flavidus]</TD><TD>Tawny puffer fish</TD>
  <TD>30-May-2013 (GCA_000400755.1)</TD>
  <TD>IOCAS/version 1 of Takifugu flavidus genome</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 93]</TH><TH>mayZeb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Maylandia_zebra/MetZeb1.1/ Maylandia zebra]</TD><TD>a cichlid fish</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 91]</TH><TH>mayZeb1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Maylandia_zebra/MetZeb1.1/ Maylandia zebra]</TD><TD>a cichlid fish</TD>
   <TD>08-Mar-2012 (GCA_000238955.2)</TD>
   <TD>08-Mar-2012 (GCA_000238955.2)</TD>
   <TD>Broad Institute/MetZeb1.1</TD>
   <TD>Broad Institute/MetZeb1.1</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 94]</TH><TH>punNye1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pundamilia_nyererei/PunNye1.0/ Pundamilia nyererei]</TD><TD>a cichlid fish</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 92]</TH><TH>punNye1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pundamilia_nyererei/PunNye1.0/ Pundamilia nyererei]</TD><TD>a cichlid fish</TD>
   <TD>12-Oct-2011 (GCA_000239375.1)</TD>
   <TD>12-Oct-2011 (GCA_000239375.1)</TD>
   <TD>Broad Institute of MIT and Harvard/PunNye1.0</TD>
   <TD>Broad Institute of MIT and Harvard/PunNye1.0</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.fugu-sg.org/ 95]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 93]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Oct.&nbsp;2005&nbsp;(NIG/UT&nbsp;MEDAKA1/oryLat2)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
   <TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD>2013-08-20</TD><TD ALIGN=RIGHT>N/A</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.849%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 94]</TH><TH>xipMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xiphophorus_maculatus/Xiphophorus_maculatus-4.4.2/ Xiphophorus maculatus]</TD><TD>southern platyfish</TD>
  <TD>02-Jan-2012 (GCA_000241075.1)</TD>
  <TD>Washington University School of Medicine/Xiphophorus_maculatus-4.4.2</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD>2013-08-28</TD><TD ALIGN=RIGHT>1.842%</TD>
</TR><TR>
  <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 95]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
  <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
  <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.916%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 96]</TH><TH>astMex1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Astyanax mexicanus]</TD><TD>Mexican tetra (cavefish)</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 96]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic&nbsp;cod</TD>
   <TD>23-Apr-2013 (GCA_000372685.1)</TD>
   <TD>May&nbsp;2010&nbsp;(Genofisk&nbsp;GadMor_May2010/gadMor1)</TD>
   <TD>Aquatic Genome Models/Astyanax_mexicanus-1.0.2</TD>
   <TD>Genofisk GadMor_May2010 (GCA_000231765.1)</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2011-12-29</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
Line 705: Line 705:
   <TD>2010-12-18</TD><TD ALIGN=RIGHT>2.790%</TD>
   <TD>2010-12-18</TD><TD ALIGN=RIGHT>2.790%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 98]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 98]</TH><TH>astMex1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Astyanax mexicanus]</TD><TD>Mexican tetra (cavefish)</TD>
   <TD>Oct.&nbsp;2005&nbsp;(NIG/UT&nbsp;MEDAKA1/oryLat2)</TD>
   <TD>23-Apr-2013 (GCA_000372685.1)</TD>
   <TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD>
   <TD>Aquatic Genome Models/Astyanax_mexicanus-1.0.2</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>2009-09-02</TD><TD ALIGN=RIGHT>1.849%</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 99]</TH><TH>xipMac1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xiphophorus_maculatus/Xiphophorus_maculatus-4.4.2/ Xiphophorus maculatus]</TD><TD>southern platyfish</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 99]</TH><TH>lepOcu1</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Lepisosteus oculatus]</TD><TD>Spotted Gar</TD>
   <TD>02-Jan-2012 (GCA_000241075.1)</TD>
   <TD>02-Dec-2011 (GCA_000242695.1)</TD>
   <TD>Washington University School of Medicine/Xiphophorus_maculatus-4.4.2</TD>
   <TD>Broad Institute of MIT and Harvard/LepOcu1</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD ALIGN=RIGHT>2013-07-01</TD>
   <TD ALIGN=RIGHT>2013-08-28</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>

Revision as of 22:12, 28 August 2013

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 2012-04-19 N/AN/A
02panTro4Pan
troglodytes
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2013-01-2595.279%
03gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2011-10-1789.876%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2009-08-1591.350%
05nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2013-03-2287.764%
06rheMac3Macaca
mulatta
Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2013-07-0482.859%
07macFas5Macaca fasciculariscrab-eating macaque 12-Jun-2013 (GCA_000364345.1) Washington University (WashU)/Macaca_fascicularis_5.0 2013-06-30 2013-06-30 2013-06-3086.666%
08papHam1Papio
hamadryas
Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 2012-05-03 2009-09-0282.810%
09chlSab1Chlorocebus sabaeusgreen monkey 12-Jun-2013 (GCA_000409795.1) Vervet Genomics Consortium/Chlorocebus_sabeus 1.0 2013-06-30 2013-06-30 2013-06-3086.446%
10calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2010-02-1170.654%
11saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2013-06-3069.598%
12otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2013-07-0254.830%
13tupChi1Tupaia chinensisChinese tree shrew 31-Jan-2013 (GCA_000334495.1) BGI/TupChi_1.0 2013-07-05 2013-07-05 2013-07-0646.558%
14speTri2Spermophilus
tridecemlineatus
Squirrel Nov. 2011 (Broad/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 N/AN/A
15jacJac1Jaculus jaculuslesser Egyptian jerboa 31-May-2012 (GCA_000280705.1) Broad Institute/JacJac1.0 2013-07-15 2013-07-15 2013-07-1635.106%
16micOch1Microtus ochrogasterPrairie Vole 31-Oct-2012 (GCA_000317375.1) Broad Institute/MicOch1.0 2013-08-26 2013-08-26 2013-08-2732.285%
17criGri1Cricetulus griseusChinese Hamster 12-Jul-2013 (GCA_000419365.1) Beijing Genomics Institution-shenzhen/C_griseus_v1.0 2013-08-28 2013-08-28 N/AN/A
18mesAur1Mesocricetus auratusgolden hamster 29-Mar-2013 (GCA_000349665.1) Broad Institute/MesAur1.0 2013-08-28 2013-08-28 N/AN/A
19mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2012-03-0735.249%
20rn5Rattus
norvegicus
Rat Mar. 2012 (RGSC 5.0/rn5) RGSC Rnor_5.0 (GCA_000001895.3) 2012-03-21 2012-03-21 2012-06-2731.662%
21octDeg1Octodon degusbrush-tailed rat 13-Apr-2012 (GCA_000260255.1) Broad Institute/OctDeg1.0 2013-07-07 2013-07-07 2013-07-0741.385%
22hetGla2Heterocephalus
glaber
Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 2013-07-1747.600%
23cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2009-09-0243.680%
24chiLan1Chinchilla
lanigera
Chinchilla May 2012  (ChiLan1.0/chiLan1) Broad Institute 2012-07-28 2012-07-27 N/AN/A
25oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 2009-09-0244.317%
26ochPri3Ochotona
princeps
Pika May 2012 (OchPri3.0/ochPri3) Broad Institute 2013-06-20 2013-06-18 2013-06-1834.676%
27susScr3Sus
scrofa
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 N/AN/A
28vicPac2Vicugna
pacos
Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) Broad Institute 2013-06-10 2013-06-10 2013-06-1850.193%
29camFer1Camelus ferusBactrian camel 25-Dec-2011 (GCA_000311805.1) The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1 2013-07-12 2013-07-12 2013-07-1350.419%
30turTru2Tursiops
truncatus
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2013-08-2051.158%
31orcOrc1Orcinus orcaKiller whale 31-Jan-2013 (GCA_000331955.1) Marine mammals/Oorc_1.1 2013-08-20 2013-08-20 2013-08-0152.072%
32panHod1Pantholops hodgsoniiTibetan antelope 28-May-2013 (GCA_000400835.1) BGI/PHO1.0 2013-07-15 2013-07-15 2013-07-1746.863%
33bosTau7Bos
taurus
Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 2012-01-04 2012-01-06 2012-01-2346.971%
34oviAri3Ovis
aries
Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) International Sheep Genome Consortium 2013-06-10 2013-06-09 2013-06-2646.833%
35capHir1Capra hircusdomestic goat 31-May-2012 (GCA_000317765.1) International Goat Genome Consortium/CHIR_1.0 2013-07-15 2013-07-15 2013-07-1746.498%
36equCab2Equus
caballus
Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 2013-06-21 2009-09-0257.050%
37cerSim1Ceratotherium
simum
White rhinoceros May 2012 (CerSimSim1.0/cerSim1) Broad Institute 2012-08-28 2012-08-28 2012-10-1958.103%
38felCat5Felis
catus
Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) 2012-04-12 2012-04-13 2013-07-1352.426%
39musFur1Mustela
putorius
furo
Ferret  Apr. 2011 (MusPutFur1.0/musFur1) Ferret Genome Sequencing Consortium 2013-03-05 2013-03-05 2013-07-1250.993%
40canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2012-07-0451.848%
41ailMel1Ailuropoda
melanoleuca
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 2013-06-21 2010-02-0450.022%
42odoRosDiv1Odobenus rosmarus divergensPacific walrus 16-Jan-2013 (GCA_000321225.1) Marine mammals/Oros_1.0 2013-07-12 2013-07-12 2013-07-1353.559%
43lepWed1Leptonychotes weddelliiWeddell seal 29-Mar-2013 (GCA_000349705.1) Broad Institute/LepWed1.0 2013-07-11 2013-07-11 2013-07-1252.424%
44pteAle1Pteropus alectoBlack Flying-fox 06-Aug-2012 (GCA_000325575.1) BGI/ASM32557v1 2013-08-28 2013-08-28 N/AN/A
45pteVam1Pteropus
vampyrus
Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 2012-05-02 2009-09-0245.414%
46myoDav1Myotis DavidiiDavid's Myotis (bat) 17-Aug-2012 (GCA_000327345.1) BGI/ASM32734v1 2013-08-28 2013-08-28 N/AN/A
47myoLuc2Myotis
lucifugus
Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 2013-06-21 N/AN/A
48eptFus1Eptesicus fuscusbig brown bat 25-Jul-2012 (GCA_000308155.1) Broad Institute/EptFus1.0 2013-08-28 2013-08-28 N/AN/A
49eriEur2Erinaceus
europaeus
Hedgehog May 2012 (EriEur2.0/eriEur2) Broad Institute EriEur2.0 2013-06-12 2013-06-07 2013-07-0926.149%
50sorAra2Sorex
araneus
Shrew Aug. 2008 (Broad/sorAra2) Broad Institute SorAra2.0 2013-05-29 2013-05-29 2013-06-1827.681%
51conCri1Condylura cristataStar-nosed mole 14-Mar-2012 (GCA_000260355.1) Broad Institute/ConCri1.0 2013-07-09 2013-07-09 2013-07-1037.034%
52loxAfr3Loxodonta
africana
Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 2013-06-21 2009-09-0246.636%
53eleEdw1Elephantulus edwardiiCape elephant shrew 01-Aug-2012 (GCA_000299155.1) Broad Institute/EleEdw1.0 2013-07-07 2013-07-07 2013-07-0927.675%
54chrAsi1Chrysochloris asiaticaCape golden mole 01-Aug-2012 (GCA_000296735.1) Broad Institute/ChrAsi1.0 2013-07-07 2013-07-07 2013-07-0934.209%
55oryAfe1Orycteropus aferAardvark 24-May-2012 (GCA_000298275.1) Broad Institute/OryAfe1.0 2013-07-07 2013-07-07 2013-07-0941.668%
56echTel2Echinops
telfairi
Tenrec Nov. 2012 (Broad/echTel2) Broad/EchTel2.0 2013-05-30 2013-05-30 2013-06-1730.135%
57triMan1Trichechus
manatus
latirostris
Manatee Oct. 2011 (Broad v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2013-07-1146.580%
58dasNov3Dasypus
novemcinctus
Armadillo Dec. 2011 (Baylor/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2013-07-0946.571%
59monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2009-09-0214.358%
60sarHar1Sarcophilus
harrisii
Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2013-07-107.414%
61macEug2Macropus
eugenii
Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2013-07-116.534%
62ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 2013-06-22 2009-09-027.627%
63falChe1Falco cherrugSaker falcon 05-Feb-2013 (GCA_000337975.1) BGI/F_cherrug_v1.0 2013-06-27 2013-06-27 2013-06-273.812%
64falPer1Falco peregrinusperegrine falcon 05-Feb-2013 (GCA_000337955.1) BGI/F_peregrinus_v1.0 2013-06-28 2013-06-28 2013-06-273.879%
65ficAlb2Ficedula albicollisCollared Flycatcher 27-Jun-2013 (GCA_000247815.2) Uppsala University/FicAlb1.5 2013-06-29 2013-06-29 2013-06-293.715%
66zonAlb1Zonotrichia albicollisWhite-throated sparrow 30-Apr-2013 (GCA_000385455.1) White-throated sparrow consortium/ASM38545v1 2013-06-26 2013-06-26 2013-06-263.476%
67geoFor1Geospiza
fortis
Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) Beijing Genomics Institute 2012-07-26 2012-07-26 2012-07-293.503%
68taeGut2Taeniopygia
guttata
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) Washington University School of Medicine 2013-06-05 2013-06-05 2013-06-175.321%
69pseHum1Pseudopodoces humilisTibetan ground jay 11-Jan-2013 (GCA_000331425.1) Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0 2013-06-27 2013-06-27 2013-06-293.982%
70melUnd1Melopsittacus
undulatus
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2013-06-273.577%
71amaVit1Amazona
vittata
Parrot Jan. 2013 (AV1/amaVit1) Puerto Rican Parrot Genome Project AV1 2013-03-27 2013-03-27 2013-06-283.298%
72araMac1Ara macaoScarlet Macaw 26-Jun-2013 (GCA_000400695.1) Texas A&M University/SMACv1.1 2013-06-28 2013-06-28 2013-06-292.912%
73colLiv1Columba liviaRock pigeon 11-Feb-2013 (GCA_000337935.1) BGI/Cliv_1.0 2013-06-27 2013-06-27 2013-06-293.683%
74anaPla1Anas platyrhynchosMallard duck 26-Apr-2013 (GCA_000355885.1) State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0 2013-06-27 2013-06-27 2013-06-273.509%
75galGal4Gallus
gallus
Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2013-06-293.684%
76melGal1Meleagris
gallopavo
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 2013-06-21 2011-03-282.645%
77allMis1Alligator
mississippiensis
American alligator Aug. 2012 (allMis0.2/allMis1) International Crocodilian Genomes Working Group 2013-06-07 2012-08-28 2013-06-287.084%
78cheMyd1Chelonia mydasgreen seaturtle 18-Mar-2013 (GCA_000344595.1) BGI/CheMyd_1.0 2013-08-26 2013-08-26 2013-08-283.696%
79chrPic1Chrysemys
picta
bellii
Painted turtle Dec. 2011 (v3.0.1/chrPic1) International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 2012-03-27 2012-03-29 N/AN/A
80pelSin1Pelodiscus sinensisSoft-shell Turtle 01-Oct-2011 (GCA_000230535.1) Soft-shell Turtle Genome Consortium/PelSin_1.0 2013-07-01 2013-07-01 N/AN/A
81apaSpi1Apalone spiniferaspiny softshell turtle 03-May-2013 (GCA_000385615.1) WUGSC/ASM38561v1 2013-08-26 2013-08-26 2013-08-282.952%
82anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2011-04-193.552%
83xenTro7Xenopus
tropicalis
X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) US DOE Joint Genome Institute (JGI-PGF) 2013-06-21 2013-06-14 N/AN/A
84latCha1Latimeria
chalumnae
Coelacanth Aug. 2011 (Broad/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2013-07-162.749%
85tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2009-09-021.712%
86fr3Takifugu
rubripes
Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2013-08-201.703%
87takFla1Takifugu flavidusTawny puffer fish 30-May-2013 (GCA_000400755.1) IOCAS/version 1 of Takifugu flavidus genome 2013-08-28 2013-08-28 N/AN/A
88oreNil2Oreochromis
niloticus
Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 N/AN/A
89neoBri1Neolamprologus brichardiPrincess of Burundi 31-May-2011 (GCA_000239395.1) Broad Institute of MIT and Harvard/NeoBri1.0 2013-08-28 2013-08-28 N/AN/A
90hapBur1Haplochromis burtoniBurton's mouthbreeder 12-Oct-2011 (GCA_000239415.1) Broad Institute of MIT and Harvard/AstBur1.0 2013-08-28 2013-08-28 N/AN/A
91mayZeb1Maylandia zebraa cichlid fish 08-Mar-2012 (GCA_000238955.2) Broad Institute/MetZeb1.1 2013-08-28 2013-08-28 N/AN/A
92punNye1Pundamilia nyerereia cichlid fish 12-Oct-2011 (GCA_000239375.1) Broad Institute of MIT and Harvard/PunNye1.0 2013-08-28 2013-08-28 N/AN/A
93oryLat2Oryzias
latipes
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2009-09-021.849%
94xipMac1Xiphophorus maculatussouthern platyfish 02-Jan-2012 (GCA_000241075.1) Washington University School of Medicine/Xiphophorus_maculatus-4.4.2 2013-07-01 2013-07-01 2013-08-281.842%
95gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2009-09-021.916%
96gadMor1Gadus
morhua
Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 N/AN/A
97danRer7Danio
rerio
Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 2013-06-21 2010-12-182.790%
98astMex1Astyanax mexicanusMexican tetra (cavefish) 23-Apr-2013 (GCA_000372685.1) Aquatic Genome Models/Astyanax_mexicanus-1.0.2 2013-08-28 2013-08-28 N/AN/A
99lepOcu1Lepisosteus oculatusSpotted Gar 02-Dec-2011 (GCA_000242695.1) Broad Institute of MIT and Harvard/LepOcu1 2013-08-28 2013-08-28 N/AN/A
100petMar2Petromyzon
marinus
Lamprey Sep. 2010 (WUGSC 7.0/petMar2) GSC Washington University School of Medicine 2012-10-12 2012-10-12 2012-10-171.046%