Hg19 Andy's alignment notes: Difference between revisions

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| 200
| 200
| 'blastz' step on pk with over 400,000 jobs (2009-05-21)
| 'blastz' step on pk with over 400,000 jobs (2009-05-21)
|-
| Sloth
| choHof1
| 2009-05-21
| 20M
| 10M
| 300
| 'blastz' step started on swarm (2009-05-21)
|}
|}

Revision as of 23:15, 21 May 2009

  • everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
Species Database Started SEQ1_CHUNK SEQ2_CHUNK SEQ2_LIMIT Status
Squirrel speTri1 2009-05-14 10M 10M 100 loaded
Cat felCat3 2009-05-14 10M 10M 300 loaded
Guinea Pig cavPor3 2009-05-14 10M 10M 100 trying to load manually (2009-05-21)
Cow bosTau4 2009-05-21 10M 10M 300 done through 'cat' step (2009-05-21)
Megabat pteVam1 2009-05-21 10M 10M 200 done through 'cat' step (2009-05-21)
Horse equCab2 2009-05-21 10M 10M 300 chaining chr19 (2009-05-21)
Alpaca vicPac1 2009-05-21 10M 10M 100 aligning (420,000 jobs) (2009-05-21)
Microbat myoLuc1 2009-05-21 20M 10M 300 'blastz' step try two on swarm instead of pk with bigger chunks (too much IO time) (2009-05-21)
Dolphin turTru1 2009-05-21 10M 10M 200 'blastz' step on pk with over 400,000 jobs (2009-05-21)
Sloth choHof1 2009-05-21 20M 10M 300 'blastz' step started on swarm (2009-05-21)