Hg19 Andy's alignment notes: Difference between revisions

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Line 81: Line 81:
| 10M  
| 10M  
| 200
| 200
| 'blastz' failed on pk (2009-05-22)
| 'blastz' step running on swarm (2009-05-28)
|-
|-
| Sloth
| Sloth
Line 90: Line 90:
| 300
| 300
| needs recip best (2009-05-28)
| needs recip best (2009-05-28)
|-
| Wallaby
| macEug1
| 2009-05-21
| 20M
| 20M
| 200
| 'blastz' step running on swarm (2009-05-28)
|}
|}

Revision as of 19:24, 28 May 2009

  • everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
Species Database Started SEQ1_CHUNK SEQ2_CHUNK SEQ2_LIMIT Status
Squirrel speTri1 2009-05-14 10M 10M 100 needs recip best (2009-05-28)
Cat felCat3 2009-05-14 10M 10M 300 needs recip best (2009-05-28)
Guinea Pig cavPor3 2009-05-14 10M 10M 100 trying to load manually (2009-05-22)
Cow bosTau4 2009-05-21 10M 10M 300 needs recip best (2009-05-28)
Megabat pteVam1 2009-05-21 10M 10M 200 needs recip best (2009-05-28)
Horse equCab2 2009-05-21 10M 10M 300 needs syntenic nets (2009-05-28)
Alpaca vicPac1 2009-05-21 10M 10M 100 'blastz' failed on swarm like microbat (2009-05-22)
Microbat myoLuc1 2009-05-21 20M 10M 300 'blastz' failed again on pk (2009-05-22)
Dolphin turTru1 2009-05-21 10M 10M 200 'blastz' step running on swarm (2009-05-28)
Sloth choHof1 2009-05-21 20M 10M 300 needs recip best (2009-05-28)
Wallaby macEug1 2009-05-21 20M 20M 200 'blastz' step running on swarm (2009-05-28)