Hg19 Andy's alignment notes: Difference between revisions

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Line 25: Line 25:
| 10M
| 10M
| 300
| 300
| running recip best (2009-06-01)
| done (2009-06-01)
|-
|-
| Guinea Pig
| Guinea Pig
Line 41: Line 41:
| 10M
| 10M
| 300
| 300
| done (2009-05-31)
| needs syntenic nets (2009-06-01)
|-
|-
| Megabat
| Megabat

Revision as of 05:25, 2 June 2009

  • everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
Species Database Started SEQ1_CHUNK SEQ2_CHUNK SEQ2_LIMIT Status
Squirrel speTri1 2009-05-14 10M 10M 100 done (2009-05-31)
Cat felCat3 2009-05-14 10M 10M 300 done (2009-06-01)
Guinea Pig cavPor3 2009-05-14 10M 10M 100 done (2009-05-31)
Cow bosTau4 2009-05-21 10M 10M 300 needs syntenic nets (2009-06-01)
Megabat pteVam1 2009-05-21 10M 10M 200 done (2009-06-01)
Horse equCab2 2009-05-21 10M 10M 300 done (2009-05-31)
Alpaca vicPac1 2009-05-21 20M 10M 300 needs recip best (2009-05-31)
Microbat myoLuc1 2009-05-21 20M 10M 300 needs recip best (2009-05-31)
Dolphin turTru1 2009-05-21 10M 10M 200 needs recip best (2009-05-31)
Sloth choHof1 2009-05-21 20M 10M 300 needs recip best (2009-05-28)
Wallaby macEug1 2009-05-21 20M 20M 200 needs recip best (2009-05-30)