Hg19 Andy's alignment notes: Difference between revisions

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Line 41: Line 41:
| 10M
| 10M
| 300
| 300
| needs syntenic nets (2009-06-01)
| running syntenic nets (2009-06-02)
|-
|-
| Megabat
| Megabat
Line 65: Line 65:
| 10M
| 10M
| 300
| 300
| needs recip best (2009-05-31)
| running recip best (2009-06-02)
|-  
|-  
| Microbat
| Microbat
Line 73: Line 73:
| 10M
| 10M
| 300
| 300
| needs recip best (2009-05-31)
| running recip best (2009-06-02)
|-  
|-  
| Dolphin
| Dolphin
Line 81: Line 81:
| 10M  
| 10M  
| 200
| 200
| needs recip best (2009-05-31)
| running recip best (2009-06-02)
|-
|-
| Sloth
| Sloth
Line 89: Line 89:
| 10M
| 10M
| 300
| 300
| needs recip best (2009-05-28)
| running recip best (2009-06-02)
|-  
|-  
| Wallaby
| Wallaby
Line 97: Line 97:
| 20M
| 20M
| 200
| 200
| needs recip best (2009-05-30)
| running recip best (2009-06-02)
|}
|}

Revision as of 01:55, 3 June 2009

  • everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
Species Database Started SEQ1_CHUNK SEQ2_CHUNK SEQ2_LIMIT Status
Squirrel speTri1 2009-05-14 10M 10M 100 done (2009-05-31)
Cat felCat3 2009-05-14 10M 10M 300 done (2009-06-01)
Guinea Pig cavPor3 2009-05-14 10M 10M 100 done (2009-05-31)
Cow bosTau4 2009-05-21 10M 10M 300 running syntenic nets (2009-06-02)
Megabat pteVam1 2009-05-21 10M 10M 200 done (2009-06-01)
Horse equCab2 2009-05-21 10M 10M 300 done (2009-05-31)
Alpaca vicPac1 2009-05-21 20M 10M 300 running recip best (2009-06-02)
Microbat myoLuc1 2009-05-21 20M 10M 300 running recip best (2009-06-02)
Dolphin turTru1 2009-05-21 10M 10M 200 running recip best (2009-06-02)
Sloth choHof1 2009-05-21 20M 10M 300 running recip best (2009-06-02)
Wallaby macEug1 2009-05-21 20M 20M 200 running recip best (2009-06-02)