Hg19 conservation alignment: Difference between revisions

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m (add category tag)
m (status update)
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   <TD>WUSTL 3.0</TD>
   <TD>WUSTL 3.0</TD>
   <TD ALIGN=RIGHT>2007-09-15</TD>
   <TD ALIGN=RIGHT>2007-09-15</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>91.350%</TD>
</TR><TR>
</TR><TR>
   <TH>05</TH><TH>rheMac2</TH><TD>Macaca<BR>mulatta</TD><TD>Rhesus</TD>
   <TH>05</TH><TH>rheMac2</TH><TD>Macaca<BR>mulatta</TD><TD>Rhesus</TD>
Line 56: Line 56:
   <TD>Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4</TD>
   <TD>Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4</TD>
   <TD ALIGN=RIGHT>2006-01-30</TD>
   <TD ALIGN=RIGHT>2006-01-30</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>06</TH><TH>papHam1</TH><TD>Papio<BR>hamadryas</TD><TD>Baboon</TD>
   <TH>06</TH><TH>papHam1</TH><TD>Papio<BR>hamadryas</TD><TD>Baboon</TD>
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   <TD>NCBI Build 37</TD>
   <TD>NCBI Build 37</TD>
   <TD ALIGN=RIGHT>2007-07-20</TD>
   <TD ALIGN=RIGHT>2007-07-20</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>35.299%</TD>
</TR><TR>
</TR><TR>
   <TH>13</TH><TH>rn4</TH><TD>Rattus<BR>norvegicus</TD><TD>Rat</TD>
   <TH>13</TH><TH>rn4</TH><TD>Rattus<BR>norvegicus</TD><TD>Rat</TD>
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   <TD>Baylor HGSC v. 3.4</TD>
   <TD>Baylor HGSC v. 3.4</TD>
   <TD ALIGN=RIGHT>2006-03-16</TD>
   <TD ALIGN=RIGHT>2006-03-16</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>32.879%</TD>
</TR><TR>
</TR><TR>
   <TH>14</TH><TH>speTri1</TH><TD>Spermophilus<BR>tridecemlineatus</TD><TD>Squirrel</TD>
   <TH>14</TH><TH>speTri1</TH><TD>Spermophilus<BR>tridecemlineatus</TD><TD>Squirrel</TD>
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   <TD>Broad Release 3</TD>
   <TD>Broad Release 3</TD>
   <TD ALIGN=RIGHT>2006-10-16</TD>
   <TD ALIGN=RIGHT>2006-10-16</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>in progress</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>20</TH><TH>canFam2</TH><TD>Canis<BR>lupus<BR>familiaris</TD><TD>Dog</TD>
   <TH>20</TH><TH>canFam2</TH><TD>Canis<BR>lupus<BR>familiaris</TD><TD>Dog</TD>
Line 146: Line 146:
   <TD>Broad Institute v. 2.0</TD>
   <TD>Broad Institute v. 2.0</TD>
   <TD ALIGN=RIGHT>2005-07-10</TD>
   <TD ALIGN=RIGHT>2005-07-10</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>52.879%</TD>
</TR><TR>
</TR><TR>
   <TH>21</TH><TH>equCab2</TH><TD>Equus<BR>caballus</TD><TD>Horse</TD>
   <TH>21</TH><TH>equCab2</TH><TD>Equus<BR>caballus</TD><TD>Horse</TD>
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   <TD>Chicken Genome Sequencing Consortium May 2006 release</TD>
   <TD>Chicken Genome Sequencing Consortium May 2006 release</TD>
   <TD ALIGN=RIGHT>2006-05-18</TD>
   <TD ALIGN=RIGHT>2006-05-18</TD>
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>in progress</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>39</TH><TH>taeGut1</TH><TD>Taeniopygia<BR>guttata</TD><TD>Zebra&nbsp;finch</TD>
   <TH>39</TH><TH>taeGut1</TH><TD>Taeniopygia<BR>guttata</TD><TD>Zebra&nbsp;finch</TD>

Revision as of 16:19, 14 May 2009

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-04-24 N/AN/AN/A
02panTro2Pan
troglodytes
Chimp Mar. 2006 Washington University Build 2 Version 1 2006-03-24 N/A2009-03-2094.846%
03gorGor1Gorilla
gorilla
gorilla
Gorilla Oct. 2008 Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) 2008-11-03 N/A2009-03-2259.484%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 WUSTL 3.0 2007-09-15 N/A2009-05-1491.350%
05rheMac2Macaca
mulatta
Rhesus Jan. 2006 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2006-01-30 N/A2009-05-13N/A
06papHam1Papio
hamadryas
Baboon Nov. 2008 Baylor BCM HGSC Pham_1.0 2009-05-13 N/AN/AN/A
07calJac1Callithrix
jacchus
Marmoset June 2007 WUSTL 2.0.2 2007-08-23 N/AN/AN/A
08otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 Broad version 1 (NCBI project 16955, AAQR00000000) 2006-12-20 N/AN/AN/A
09micMur1Microcebus
murinus
Mouse lemur Jun. 2003 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2008-08-03 N/AN/AN/A
10tupBel1Tupaia
belangeri
TreeShrew Dec. 2006 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2008-10-15 N/AN/AN/A
11sorAra1Sorex
araneus
Shrew June 2006 Broad Institute sorAra1 (Draft_v2) 2008-10-20 2008-10-21N/AN/A
12mm9Mus
musculus
Mouse July 2007 NCBI Build 37 2007-07-20 N/A2009-05-1335.299%
13rn4Rattus
norvegicus
Rat Nov. 2004 Baylor HGSC v. 3.4 2006-03-16 N/A2009-05-1332.879%
14speTri1Spermophilus
tridecemlineatus
Squirrel Feb. 2008 Broad Institute speTri1 2008-08-03 N/AN/AN/A
15cavPor3Cavia
porcellus
Guinea Pig Feb. 2008 Broad Institute cavPor3 2008-04-05 2008-04-08N/AN/A
16oryCun1Oryctolagus
cuniculus
Rabbit May 2005 Broad May 2005 2005-05-22 N/AN/AN/A
17ochPri2Ochotona
princeps
Pika Jul. 2008 Broad Institute ochPri2 2008-07-28 N/AN/AN/A
18eriEur1Erinaceus
europaeus
Hedgehog June 2006 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2008-10-21 2008-10-21N/AN/A
19felCat3Felis
catus
Cat Mar. 2006 Broad Release 3 2006-10-16 N/Ain progressN/A
20canFam2Canis
lupus
familiaris
Dog May 2005 Broad Institute v. 2.0 2005-07-10 N/A2009-05-1452.879%
21equCab2Equus
caballus
Horse Sep. 2007 Broad Institute EquCab2 2008-04-03 N/AN/AN/A
22vicPac1Vicugna
pacos
Alpaca Jul. 2008 Broad Institute vicPac1 2008-10-17 N/AN/AN/A
23pteVam1Pteropus
vampyrus
Megabat Jul. 2008 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2008-10-15 N/AN/AN/A
24myoLuc1Myotis
lucifugus
Microbat Mar. 2006 Broad Institute myoLuc1 2008-07-29 N/AN/AN/A
25turTru1Tursiops
truncatus
Dolphin Feb. 2008 Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2008-10-15 N/AN/AN/A
26bosTau4Bos
taurus
Cow Oct. 2007 Baylor Release 4.0 2008-03-10 N/AN/AN/A
27choHof1Choloepus
hoffmanni
Sloth Jul. 2008 Broad Institute choHof1 2008-10-16 N/AN/AN/A
28tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2008-10-15 N/AN/AN/A
29dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2008-10-15 N/AN/AN/A
30proCap1Procavia
capensis
Rock hyrax Jul. 2008 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2008-10-16 N/AN/AN/A
31macEug1Macropus
eugenii
Wallaby Nov. 2007 Baylor Release 1.0 N/A 2008-12-26N/AN/A
32dasNov1Dasypus
novemcinctus
Armadillo May 2005 Broad May 2005 2005-05-23 N/AN/AN/A
33echTel1Echinops
telfairi
Tenrec July 2005 Broad July 2005 2005-08-04 N/AN/AN/A
34loxAfr2Loxodonta
africana
Elephant Jul. 2008 Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000) 2008-10-07 N/AN/AN/A
35dasNov2Dasypus
novemcinctus
Armadillo Jul. 2008 Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2008-10-07 N/AN/AN/A
36monDom5Monodelphis
domestica
Opossum Oct. 2006 Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2008-11-26 2008-12-02N/AN/A
37ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 WUSTL version 5.0.1 2007-07-20 N/AN/AN/A
38galGal3Gallus
gallus
Chicken May 2006 Chicken Genome Sequencing Consortium May 2006 release 2006-05-18 2007-01-02in progressN/A
39taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 Washington University taeGut1 2009-02-04 2008-08-05N/AN/A
40anoCar1Anolis
carolinensis
Lizard Feb. 2007 Broad Institute AnoCar (1.0) 2007-03-07 2007-02-16N/AN/A
41xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 JGI v4.1 2006-04-17 2007-02-20N/AN/A
42danRer5Danio
rerio
Zebrafish July 2007 Wellcome Trust Sanger Institute, Zv7 assembly 2007-09-05 N/AN/AN/A
43tetNig1Tetraodon
nigroviridis
Tetraodon Feb. 2004 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000) 2004-08-17 2006-12-05N/AN/A
44fr2Takifugu
rubripes
Fugu Oct. 2004 JGI V4.0 2007-03-07 2007-01-22N/AN/A
45gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2006-10-17 2006-12-05N/AN/A
46oryLat2Oryzias
latipes
Medaka Oct. 2005 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2008-08-12 2008-08-14N/AN/A
47petMar1Petromyzon
marinus
Lamprey Mar. 2007 WUSTL v.3.0 (March 2007) N/A 2008-01-28N/AN/A