Hg19 conservation alignment: Difference between revisions

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This table is automatically generated off-line from the UCSC databases.  Please do
This table is automatically generated off-line from the UCSC databases.  Please do
not edit it.
not edit it.
<TABLE BORDER=1>
<TABLE BORDER=1>
<TR>
<TR>
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   <TD>Broad Institute choHof1</TD>
   <TD>Broad Institute choHof1</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>34.376%</TD>
</TR><TR>
</TR><TR>
   <TH>29</TH><TH>dipOrd1</TH><TD>Dipodomys<BR>ordii</TD><TD>Kangaroo&nbsp;rat</TD>
   <TH>29</TH><TH>dipOrd1</TH><TD>Dipodomys<BR>ordii</TD><TD>Kangaroo&nbsp;rat</TD>
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   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>36</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>
   <TH>36</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>
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   <TD>WUSTL version 5.0.1</TD>
   <TD>WUSTL version 5.0.1</TD>
   <TD ALIGN=RIGHT>2007-07-20</TD>
   <TD ALIGN=RIGHT>2007-07-20</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>7.627%</TD>
</TR><TR>
</TR><TR>
   <TH>38</TH><TH>galGal3</TH><TD>Gallus<BR>gallus</TD><TD>Chicken</TD>
   <TH>38</TH><TH>galGal3</TH><TD>Gallus<BR>gallus</TD><TD>Chicken</TD>
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   <TD>JGI v4.1</TD>
   <TD>JGI v4.1</TD>
   <TD ALIGN=RIGHT>2006-04-17</TD>
   <TD ALIGN=RIGHT>2006-04-17</TD>
   <TD ALIGN=RIGHT>2007-02-20</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2007-02-20</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>3.176%</TD>
</TR><TR>
</TR><TR>
   <TH>42</TH><TH>danRer5</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>
   <TH>42</TH><TH>danRer5</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>
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   <TD>Wellcome Trust Sanger Institute, Zv7 assembly</TD>
   <TD>Wellcome Trust Sanger Institute, Zv7 assembly</TD>
   <TD ALIGN=RIGHT>2007-09-05</TD>
   <TD ALIGN=RIGHT>2007-09-05</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>2.562%</TD>
</TR><TR>
</TR><TR>
   <TH>43</TH><TH>tetNig1</TH><TD>Tetraodon<BR>nigroviridis</TD><TD>Tetraodon</TD>
   <TH>43</TH><TH>tetNig1</TH><TD>Tetraodon<BR>nigroviridis</TD><TD>Tetraodon</TD>

Revision as of 23:18, 27 May 2009

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-04-24 N/AN/AN/A
02panTro2Pan
troglodytes
Chimp Mar. 2006 Washington University Build 2 Version 1 2006-03-24 N/A2009-03-2094.846%
03gorGor1Gorilla
gorilla
gorilla
Gorilla Oct. 2008 Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) 2008-11-03 N/A2009-03-2259.484%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 WUSTL 3.0 2007-09-15 N/A2009-05-1491.350%
05rheMac2Macaca
mulatta
Rhesus Jan. 2006 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2006-01-30 N/A2009-05-1482.744%
06papHam1Papio
hamadryas
Baboon Nov. 2008 Baylor BCM HGSC Pham_1.0 2009-05-13 N/A2009-05-2082.810%
07calJac1Callithrix
jacchus
Marmoset June 2007 WUSTL 2.0.2 2007-08-23 N/A2009-05-1470.860%
08tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2008-10-15 N/A2009-05-1547.830%
09otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 Broad version 1 (NCBI project 16955, AAQR00000000) 2006-12-20 N/A2009-05-1543.644%
10micMur1Microcebus
murinus
Mouse lemur Jun. 2003 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2008-08-03 N/A2009-05-2246.519%
11tupBel1Tupaia
belangeri
TreeShrew Dec. 2006 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2008-10-15 N/AN/AN/A
12sorAra1Sorex
araneus
Shrew June 2006 Broad Institute sorAra1 (Draft_v2) 2008-10-20 2008-10-21N/AN/A
13mm9Mus
musculus
Mouse July 2007 NCBI Build 37 2007-07-20 N/A2009-05-1335.299%
14rn4Rattus
norvegicus
Rat Nov. 2004 Baylor HGSC v. 3.4 2006-03-16 N/A2009-05-1332.879%
15speTri1Spermophilus
tridecemlineatus
Squirrel Feb. 2008 Broad Institute speTri1 2008-08-03 N/A2009-05-1535.712%
16cavPor3Cavia
porcellus
Guinea Pig Feb. 2008 Broad Institute cavPor3 2008-04-05 2008-04-082009-05-22N/A
17oryCun1Oryctolagus
cuniculus
Rabbit May 2005 Broad May 2005 2005-05-22 N/AN/AN/A
18ochPri2Ochotona
princeps
Pika Jul. 2008 Broad Institute ochPri2 2008-07-28 N/AN/AN/A
19eriEur1Erinaceus
europaeus
Hedgehog June 2006 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2008-10-21 2008-10-21N/AN/A
20felCat3Felis
catus
Cat Mar. 2006 Broad Release 3 2006-10-16 N/A2009-05-1435.717%
21canFam2Canis
lupus
familiaris
Dog May 2005 Broad Institute v. 2.0 2005-07-10 N/A2009-05-1452.879%
22equCab2Equus
caballus
Horse Sep. 2007 Broad Institute EquCab2 2008-04-03 N/A2009-05-2257.051%
23vicPac1Vicugna
pacos
Alpaca Jul. 2008 Broad Institute vicPac1 2008-10-17 N/AN/AN/A
24pteVam1Pteropus
vampyrus
Megabat Jul. 2008 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2008-10-15 N/A2009-05-2145.416%
25myoLuc1Myotis
lucifugus
Microbat Mar. 2006 Broad Institute myoLuc1 2008-07-29 N/AN/AN/A
26turTru1Tursiops
truncatus
Dolphin Feb. 2008 Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2008-10-15 N/AN/AN/A
27bosTau4Bos
taurus
Cow Oct. 2007 Baylor Release 4.0 2008-03-10 N/A2009-05-2146.507%
28choHof1Choloepus
hoffmanni
Sloth Jul. 2008 Broad Institute choHof1 2008-10-16 N/A2009-05-2634.376%
29dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2008-10-15 N/AN/AN/A
30proCap1Procavia
capensis
Rock hyrax Jul. 2008 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2008-10-16 N/A2009-05-2630.864%
31macEug1Macropus
eugenii
Wallaby Nov. 2007 Baylor Release 1.0 N/A 2008-12-26N/AN/A
32dasNov1Dasypus
novemcinctus
Armadillo May 2005 Broad May 2005 2005-05-23 N/AN/AN/A
33echTel1Echinops
telfairi
Tenrec July 2005 Broad July 2005 2005-08-04 N/AN/AN/A
34loxAfr2Loxodonta
africana
Elephant Jul. 2008 Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000) 2008-10-07 N/AN/AN/A
35dasNov2Dasypus
novemcinctus
Armadillo Jul. 2008 Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2008-10-07 N/A2009-05-27N/A
36monDom5Monodelphis
domestica
Opossum Oct. 2006 Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2008-11-26 2008-12-02N/AN/A
37ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 WUSTL version 5.0.1 2007-07-20 N/A2009-05-277.627%
38galGal3Gallus
gallus
Chicken May 2006 Chicken Genome Sequencing Consortium May 2006 release 2006-05-18 2007-01-022009-05-143.591%
39taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 Washington University taeGut1 2009-02-04 2008-08-052009-05-263.496%
40anoCar1Anolis
carolinensis
Lizard Feb. 2007 Broad Institute AnoCar (1.0) 2007-03-07 2007-02-16N/AN/A
41xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 JGI v4.1 2006-04-17 2007-02-202009-05-273.176%
42danRer5Danio
rerio
Zebrafish July 2007 Wellcome Trust Sanger Institute, Zv7 assembly 2007-09-05 N/A2009-05-262.562%
43tetNig1Tetraodon
nigroviridis
Tetraodon Feb. 2004 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000) 2004-08-17 2006-12-052009-05-142.003%
44fr2Takifugu
rubripes
Fugu Oct. 2004 JGI V4.0 2007-03-07 2007-01-222009-05-201.702%
45gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2006-10-17 2006-12-052009-05-141.916%
46oryLat2Oryzias
latipes
Medaka Oct. 2005 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2008-08-12 2008-08-142009-05-221.849%
47petMar1Petromyzon
marinus
Lamprey Mar. 2007 WUSTL v.3.0 (March 2007) N/A 2008-01-282009-05-141.082%