Hg19 conservation alignment: Difference between revisions

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(update status)
(status update and different order)
Line 86: Line 86:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>47.830%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>47.830%</TD>
</TR><TR>
</TR><TR>
   <TH>09</TH><TH>otoGar1</TH><TD>Otolemur<BR>garnettii</TD><TD>Bushbaby</TD>
   <TH>09</TH><TH>micMur1</TH><TD>Microcebus<BR>murinus</TD><TD>Mouse&nbsp;lemur</TD>
 
  <TD>Jun.&nbsp;2003</TD>
  <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
  <TD ALIGN=RIGHT>2008-08-03</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>46.519%</TD>
</TR><TR>
  <TH>10</TH><TH>otoGar1</TH><TD>Otolemur<BR>garnettii</TD><TD>Bushbaby</TD>


   <TD>Dec.&nbsp;2006</TD>
   <TD>Dec.&nbsp;2006</TD>
Line 93: Line 100:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>43.644%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>43.644%</TD>
</TR><TR>
</TR><TR>
   <TH>10</TH><TH>micMur1</TH><TD>Microcebus<BR>murinus</TD><TD>Mouse&nbsp;lemur</TD>
   <TH>11</TH><TH>equCab2</TH><TD>Equus<BR>caballus</TD><TD>Horse</TD>


   <TD>Jun.&nbsp;2003</TD>
   <TD>Sep.&nbsp;2007</TD>
   <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD ALIGN=RIGHT>2008-08-03</TD>
   <TD ALIGN=RIGHT>2008-04-03</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>46.519%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>57.051%</TD>
</TR><TR>
</TR><TR>
   <TH>11</TH><TH>tupBel1</TH><TD>Tupaia<BR>belangeri</TD><TD>TreeShrew</TD>
   <TH>12</TH><TH>tupBel1</TH><TD>Tupaia<BR>belangeri</TD><TD>TreeShrew</TD>


   <TD>Dec.&nbsp;2006</TD>
   <TD>Dec.&nbsp;2006</TD>
Line 107: Line 114:
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>12</TH><TH>sorAra1</TH><TD>Sorex<BR>araneus</TD><TD>Shrew</TD>
   <TH>13</TH><TH>turTru1</TH><TD>Tursiops<BR>truncatus</TD><TD>Dolphin</TD>


   <TD>June&nbsp;2006</TD>
   <TD>Feb.&nbsp;2008</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
   <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
   <TD ALIGN=RIGHT>2008-10-20</TD>
   <TD ALIGN=RIGHT>2008-10-15</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
  <TH>13</TH><TH>mm9</TH><TD>Mus<BR>musculus</TD><TD>Mouse</TD>
   <TH>14</TH><TH>speTri1</TH><TD>Spermophilus<BR>tridecemlineatus</TD><TD>Squirrel</TD>
 
  <TD>July&nbsp;2007</TD>
  <TD>NCBI Build 37</TD>
  <TD ALIGN=RIGHT>2007-07-20</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>35.299%</TD>
</TR><TR>
   <TH>14</TH><TH>rn4</TH><TD>Rattus<BR>norvegicus</TD><TD>Rat</TD>
 
  <TD>Nov.&nbsp;2004</TD>
  <TD>Baylor HGSC v. 3.4</TD>
  <TD ALIGN=RIGHT>2006-03-16</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>32.879%</TD>
</TR><TR>
  <TH>15</TH><TH>speTri1</TH><TD>Spermophilus<BR>tridecemlineatus</TD><TD>Squirrel</TD>


   <TD>Feb.&nbsp;2008</TD>
   <TD>Feb.&nbsp;2008</TD>
Line 135: Line 128:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>35.712%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-15</TD><TD ALIGN=RIGHT>35.712%</TD>
</TR><TR>
</TR><TR>
   <TH>16</TH><TH>cavPor3</TH><TD>Cavia<BR>porcellus</TD><TD>Guinea&nbsp;Pig</TD>
   <TH>15</TH><TH>vicPac1</TH><TD>Vicugna<BR>pacos</TD><TD>Alpaca</TD>


   <TD>Feb.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute cavPor3</TD>
   <TD>Broad Institute vicPac1</TD>
   <TD ALIGN=RIGHT>2008-04-05</TD>
   <TD ALIGN=RIGHT>2008-10-17</TD>
   <TD ALIGN=RIGHT>2008-04-08</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>17</TH><TH>oryCun1</TH><TD>Oryctolagus<BR>cuniculus</TD><TD>Rabbit</TD>
   <TH>16</TH><TH>choHof1</TH><TD>Choloepus<BR>hoffmanni</TD><TD>Sloth</TD>


   <TD>May&nbsp;2005</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad May 2005</TD>
   <TD>Broad Institute choHof1</TD>
   <TD ALIGN=RIGHT>2005-05-22</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>34.376%</TD>
</TR><TR>
</TR><TR>
   <TH>18</TH><TH>ochPri2</TH><TD>Ochotona<BR>princeps</TD><TD>Pika</TD>
   <TH>17</TH><TH>pteVam1</TH><TD>Pteropus<BR>vampyrus</TD><TD>Megabat</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute ochPri2</TD>
   <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
   <TD ALIGN=RIGHT>2008-07-28</TD>
   <TD ALIGN=RIGHT>2008-10-15</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-21</TD><TD ALIGN=RIGHT>45.416%</TD>
</TR><TR>
</TR><TR>
   <TH>19</TH><TH>eriEur1</TH><TD>Erinaceus<BR>europaeus</TD><TD>Hedgehog</TD>
   <TH>18</TH><TH>loxAfr2</TH><TD>Loxodonta<BR>africana</TD><TD>Elephant</TD>


   <TD>June&nbsp;2006</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
   <TD>Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000)</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-28</TD><TD ALIGN=RIGHT>35.153%</TD>
</TR><TR>
</TR><TR>
   <TH>20</TH><TH>felCat3</TH><TD>Felis<BR>catus</TD><TD>Cat</TD>
   <TH>19</TH><TH>felCat3</TH><TD>Felis<BR>catus</TD><TD>Cat</TD>


   <TD>Mar.&nbsp;2006</TD>
   <TD>Mar.&nbsp;2006</TD>
Line 170: Line 163:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>35.717%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>35.717%</TD>
</TR><TR>
</TR><TR>
   <TH>21</TH><TH>canFam2</TH><TD>Canis<BR>lupus<BR>familiaris</TD><TD>Dog</TD>
   <TH>20</TH><TH>canFam2</TH><TD>Canis<BR>lupus<BR>familiaris</TD><TD>Dog</TD>


   <TD>May&nbsp;2005</TD>
   <TD>May&nbsp;2005</TD>
Line 177: Line 170:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>52.879%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>52.879%</TD>
</TR><TR>
</TR><TR>
   <TH>22</TH><TH>equCab2</TH><TD>Equus<BR>caballus</TD><TD>Horse</TD>
   <TH>21</TH><TH>dasNov2</TH><TD>Dasypus<BR>novemcinctus</TD><TD>Armadillo</TD>


   <TD>Sep.&nbsp;2007</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD ALIGN=RIGHT>2008-04-03</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>57.051%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>33.543%</TD>
</TR><TR>
</TR><TR>
   <TH>23</TH><TH>vicPac1</TH><TD>Vicugna<BR>pacos</TD><TD>Alpaca</TD>
   <TH>22</TH><TH>oryCun1</TH><TD>Oryctolagus<BR>cuniculus</TD><TD>Rabbit</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>May&nbsp;2005</TD>
   <TD>Broad Institute vicPac1</TD>
   <TD>Broad May 2005</TD>
   <TD ALIGN=RIGHT>2008-10-17</TD>
   <TD ALIGN=RIGHT>2005-05-22</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>24</TH><TH>pteVam1</TH><TD>Pteropus<BR>vampyrus</TD><TD>Megabat</TD>
   <TH>23</TH><TH>myoLuc1</TH><TD>Myotis<BR>lucifugus</TD><TD>Microbat</TD>
 
  <TD>Jul.&nbsp;2008</TD>
  <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
  <TD ALIGN=RIGHT>2008-10-15</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-21</TD><TD ALIGN=RIGHT>45.416%</TD>
</TR><TR>
  <TH>25</TH><TH>myoLuc1</TH><TD>Myotis<BR>lucifugus</TD><TD>Microbat</TD>


   <TD>Mar.&nbsp;2006</TD>
   <TD>Mar.&nbsp;2006</TD>
Line 205: Line 191:
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>26</TH><TH>turTru1</TH><TD>Tursiops<BR>truncatus</TD><TD>Dolphin</TD>
   <TH>24</TH><TH>bosTau4</TH><TD>Bos<BR>taurus</TD><TD>Cow</TD>
 
  <TD>Feb.&nbsp;2008</TD>
  <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
  <TD ALIGN=RIGHT>2008-10-15</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>27</TH><TH>bosTau4</TH><TD>Bos<BR>taurus</TD><TD>Cow</TD>


   <TD>Oct.&nbsp;2007</TD>
   <TD>Oct.&nbsp;2007</TD>
Line 219: Line 198:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-21</TD><TD ALIGN=RIGHT>46.507%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-21</TD><TD ALIGN=RIGHT>46.507%</TD>
</TR><TR>
</TR><TR>
   <TH>28</TH><TH>choHof1</TH><TD>Choloepus<BR>hoffmanni</TD><TD>Sloth</TD>
   <TH>25</TH><TH>cavPor3</TH><TD>Cavia<BR>porcellus</TD><TD>Guinea&nbsp;Pig</TD>
 
  <TD>Feb.&nbsp;2008</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2008-04-05</TD>
  <TD ALIGN=RIGHT>2008-04-08</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>26</TH><TH>proCap1</TH><TD>Procavia<BR>capensis</TD><TD>Rock&nbsp;hyrax</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute choHof1</TD>
   <TD>Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>34.376%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>30.864%</TD>
</TR><TR>
</TR><TR>
   <TH>29</TH><TH>dipOrd1</TH><TD>Dipodomys<BR>ordii</TD><TD>Kangaroo&nbsp;rat</TD>
   <TH>27</TH><TH>dipOrd1</TH><TD>Dipodomys<BR>ordii</TD><TD>Kangaroo&nbsp;rat</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
Line 233: Line 219:
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>30</TH><TH>proCap1</TH><TD>Procavia<BR>capensis</TD><TD>Rock&nbsp;hyrax</TD>
   <TH>28</TH><TH>ochPri2</TH><TD>Ochotona<BR>princeps</TD><TD>Pika</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
   <TD>Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)</TD>
   <TD>Broad Institute ochPri2</TD>
   <TD ALIGN=RIGHT>2008-10-16</TD>
   <TD ALIGN=RIGHT>2008-07-28</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>30.864%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>31</TH><TH>macEug1</TH><TD>Macropus<BR>eugenii</TD><TD>Wallaby</TD>
   <TH>29</TH><TH>eriEur1</TH><TD>Erinaceus<BR>europaeus</TD><TD>Hedgehog</TD>


   <TD>Nov.&nbsp;2007</TD>
   <TD>June&nbsp;2006</TD>
   <TD>Baylor Release 1.0</TD>
   <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD>
   <TD ALIGN=RIGHT>2008-12-26</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>32</TH><TH>dasNov1</TH><TD>Dasypus<BR>novemcinctus</TD><TD>Armadillo</TD>
   <TH>30</TH><TH>echTel1</TH><TD>Echinops<BR>telfairi</TD><TD>Tenrec</TD>
 
  <TD>May&nbsp;2005</TD>
  <TD>Broad May 2005</TD>
  <TD ALIGN=RIGHT>2005-05-23</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>33</TH><TH>echTel1</TH><TD>Echinops<BR>telfairi</TD><TD>Tenrec</TD>


   <TD>July&nbsp;2005</TD>
   <TD>July&nbsp;2005</TD>
   <TD>Broad July 2005</TD>
   <TD>Broad July 2005</TD>
   <TD ALIGN=RIGHT>2005-08-04</TD>
   <TD ALIGN=RIGHT>2005-08-04</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-28</TD><TD ALIGN=RIGHT>23.120%</TD>
</TR><TR>
  <TH>31</TH><TH>mm9</TH><TD>Mus<BR>musculus</TD><TD>Mouse</TD>
 
  <TD>July&nbsp;2007</TD>
  <TD>NCBI Build 37</TD>
  <TD ALIGN=RIGHT>2007-07-20</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>35.299%</TD>
</TR><TR>
  <TH>32</TH><TH>rn4</TH><TD>Rattus<BR>norvegicus</TD><TD>Rat</TD>
 
  <TD>Nov.&nbsp;2004</TD>
  <TD>Baylor HGSC v. 3.4</TD>
  <TD ALIGN=RIGHT>2006-03-16</TD>
  <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-13</TD><TD ALIGN=RIGHT>32.879%</TD>
</TR><TR>
</TR><TR>
   <TH>34</TH><TH>loxAfr2</TH><TD>Loxodonta<BR>africana</TD><TD>Elephant</TD>
   <TH>33</TH><TH>sorAra1</TH><TD>Sorex<BR>araneus</TD><TD>Shrew</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>June&nbsp;2006</TD>
   <TD>Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000)</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>2008-10-20</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2008-10-21</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>35</TH><TH>dasNov2</TH><TD>Dasypus<BR>novemcinctus</TD><TD>Armadillo</TD>
   <TH>34</TH><TH>macEug1</TH><TD>Macropus<BR>eugenii</TD><TD>Wallaby</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Nov.&nbsp;2007</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD>Baylor Release 1.0</TD>
   <TD ALIGN=RIGHT>2008-10-07</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2008-12-26</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>36</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>
   <TH>35</TH><TH>monDom5</TH><TD>Monodelphis<BR>domestica</TD><TD>Opossum</TD>


   <TD>Oct.&nbsp;2006</TD>
   <TD>Oct.&nbsp;2006</TD>
Line 282: Line 275:
   <TD ALIGN=RIGHT>2008-12-02</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2008-12-02</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>37</TH><TH>ornAna1</TH><TD>Ornithorhynchus<BR>anatinus</TD><TD>Platypus</TD>
   <TH>36</TH><TH>ornAna1</TH><TD>Ornithorhynchus<BR>anatinus</TD><TD>Platypus</TD>


   <TD>Mar.&nbsp;2007</TD>
   <TD>Mar.&nbsp;2007</TD>
Line 289: Line 282:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>7.627%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>7.627%</TD>
</TR><TR>
</TR><TR>
   <TH>38</TH><TH>galGal3</TH><TD>Gallus<BR>gallus</TD><TD>Chicken</TD>
   <TH>37</TH><TH>galGal3</TH><TD>Gallus<BR>gallus</TD><TD>Chicken</TD>


   <TD>May&nbsp;2006</TD>
   <TD>May&nbsp;2006</TD>
Line 296: Line 289:
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>3.591%</TD>
   <TD ALIGN=RIGHT>2007-01-02</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>3.591%</TD>
</TR><TR>
</TR><TR>
   <TH>39</TH><TH>taeGut1</TH><TD>Taeniopygia<BR>guttata</TD><TD>Zebra&nbsp;finch</TD>
   <TH>38</TH><TH>taeGut1</TH><TD>Taeniopygia<BR>guttata</TD><TD>Zebra&nbsp;finch</TD>


   <TD>Jul.&nbsp;2008</TD>
   <TD>Jul.&nbsp;2008</TD>
Line 303: Line 296:
   <TD ALIGN=RIGHT>2008-08-05</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>3.496%</TD>
   <TD ALIGN=RIGHT>2008-08-05</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>3.496%</TD>
</TR><TR>
</TR><TR>
   <TH>40</TH><TH>anoCar1</TH><TD>Anolis<BR>carolinensis</TD><TD>Lizard</TD>
   <TH>39</TH><TH>anoCar1</TH><TD>Anolis<BR>carolinensis</TD><TD>Lizard</TD>


   <TD>Feb.&nbsp;2007</TD>
   <TD>Feb.&nbsp;2007</TD>
Line 310: Line 303:
   <TD ALIGN=RIGHT>2007-02-16</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2007-02-16</TD><TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>41</TH><TH>xenTro2</TH><TD>Xenopus<BR>tropicalis</TD><TD>X.&nbsp;tropicalis</TD>
   <TH>40</TH><TH>xenTro2</TH><TD>Xenopus<BR>tropicalis</TD><TD>X.&nbsp;tropicalis</TD>


   <TD>Aug.&nbsp;2005</TD>
   <TD>Aug.&nbsp;2005</TD>
Line 317: Line 310:
   <TD ALIGN=RIGHT>2007-02-20</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>3.176%</TD>
   <TD ALIGN=RIGHT>2007-02-20</TD><TD>2009-05-27</TD><TD ALIGN=RIGHT>3.176%</TD>
</TR><TR>
</TR><TR>
   <TH>42</TH><TH>danRer5</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>
  <TH>41</TH><TH>gasAcu1</TH><TD>Gasterosteus<BR>aculeatus</TD><TD>Stickleback</TD>
 
  <TD>Feb.&nbsp;2006</TD>
  <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
  <TD ALIGN=RIGHT>2006-10-17</TD>
  <TD ALIGN=RIGHT>2006-12-05</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>1.916%</TD>
</TR><TR>
   <TH>42</TH><TH>fr2</TH><TD>Takifugu<BR>rubripes</TD><TD>Fugu</TD>
 
  <TD>Oct.&nbsp;2004</TD>
  <TD>JGI V4.0</TD>
  <TD ALIGN=RIGHT>2007-03-07</TD>
  <TD ALIGN=RIGHT>2007-01-22</TD><TD>2009-05-20</TD><TD ALIGN=RIGHT>1.702%</TD>
</TR><TR>
  <TH>43</TH><TH>danRer5</TH><TD>Danio<BR>rerio</TD><TD>Zebrafish</TD>


   <TD>July&nbsp;2007</TD>
   <TD>July&nbsp;2007</TD>
Line 324: Line 331:
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>2.562%</TD>
   <TD ALIGN=RIGHT>N/A</TD><TD>2009-05-26</TD><TD ALIGN=RIGHT>2.562%</TD>
</TR><TR>
</TR><TR>
   <TH>43</TH><TH>tetNig1</TH><TD>Tetraodon<BR>nigroviridis</TD><TD>Tetraodon</TD>
   <TH>44</TH><TH>tetNig1</TH><TD>Tetraodon<BR>nigroviridis</TD><TD>Tetraodon</TD>


   <TD>Feb.&nbsp;2004</TD>
   <TD>Feb.&nbsp;2004</TD>
Line 331: Line 338:
   <TD ALIGN=RIGHT>2006-12-05</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>2.003%</TD>
   <TD ALIGN=RIGHT>2006-12-05</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>2.003%</TD>
</TR><TR>
</TR><TR>
  <TH>44</TH><TH>fr2</TH><TD>Takifugu<BR>rubripes</TD><TD>Fugu</TD>
   <TH>45</TH><TH>oryLat2</TH><TD>Oryzias<BR>latipes</TD><TD>Medaka</TD>
 
  <TD>Oct.&nbsp;2004</TD>
  <TD>JGI V4.0</TD>
  <TD ALIGN=RIGHT>2007-03-07</TD>
  <TD ALIGN=RIGHT>2007-01-22</TD><TD>2009-05-20</TD><TD ALIGN=RIGHT>1.702%</TD>
</TR><TR>
   <TH>45</TH><TH>gasAcu1</TH><TD>Gasterosteus<BR>aculeatus</TD><TD>Stickleback</TD>
 
  <TD>Feb.&nbsp;2006</TD>
  <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
  <TD ALIGN=RIGHT>2006-10-17</TD>
  <TD ALIGN=RIGHT>2006-12-05</TD><TD>2009-05-14</TD><TD ALIGN=RIGHT>1.916%</TD>
</TR><TR>
  <TH>46</TH><TH>oryLat2</TH><TD>Oryzias<BR>latipes</TD><TD>Medaka</TD>


   <TD>Oct.&nbsp;2005</TD>
   <TD>Oct.&nbsp;2005</TD>
Line 352: Line 345:
   <TD ALIGN=RIGHT>2008-08-14</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>1.849%</TD>
   <TD ALIGN=RIGHT>2008-08-14</TD><TD>2009-05-22</TD><TD ALIGN=RIGHT>1.849%</TD>
</TR><TR>
</TR><TR>
   <TH>47</TH><TH>petMar1</TH><TD>Petromyzon<BR>marinus</TD><TD>Lamprey</TD>
   <TH>46</TH><TH>petMar1</TH><TD>Petromyzon<BR>marinus</TD><TD>Lamprey</TD>


   <TD>Mar.&nbsp;2007</TD>
   <TD>Mar.&nbsp;2007</TD>
Line 360: Line 353:
</TR>
</TR>
</TABLE>
</TABLE>


[[Category:Comparative Genomics]]
[[Category:Comparative Genomics]]

Revision as of 00:09, 29 May 2009

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-04-24 N/AN/AN/A
02panTro2Pan
troglodytes
Chimp Mar. 2006 Washington University Build 2 Version 1 2006-03-24 N/A2009-03-2094.846%
03gorGor1Gorilla
gorilla
gorilla
Gorilla Oct. 2008 Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) 2008-11-03 N/A2009-03-2259.484%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 WUSTL 3.0 2007-09-15 N/A2009-05-1491.350%
05rheMac2Macaca
mulatta
Rhesus Jan. 2006 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2006-01-30 N/A2009-05-1482.744%
06papHam1Papio
hamadryas
Baboon Nov. 2008 Baylor BCM HGSC Pham_1.0 2009-05-13 N/A2009-05-2082.810%
07calJac1Callithrix
jacchus
Marmoset June 2007 WUSTL 2.0.2 2007-08-23 N/A2009-05-1470.860%
08tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2008-10-15 N/A2009-05-1547.830%
09micMur1Microcebus
murinus
Mouse lemur Jun. 2003 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2008-08-03 N/A2009-05-2246.519%
10otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 Broad version 1 (NCBI project 16955, AAQR00000000) 2006-12-20 N/A2009-05-1543.644%
11equCab2Equus
caballus
Horse Sep. 2007 Broad Institute EquCab2 2008-04-03 N/A2009-05-2257.051%
12tupBel1Tupaia
belangeri
TreeShrew Dec. 2006 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2008-10-15 N/AN/AN/A
13turTru1Tursiops
truncatus
Dolphin Feb. 2008 Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2008-10-15 N/AN/AN/A
14speTri1Spermophilus
tridecemlineatus
Squirrel Feb. 2008 Broad Institute speTri1 2008-08-03 N/A2009-05-1535.712%
15vicPac1Vicugna
pacos
Alpaca Jul. 2008 Broad Institute vicPac1 2008-10-17 N/AN/AN/A
16choHof1Choloepus
hoffmanni
Sloth Jul. 2008 Broad Institute choHof1 2008-10-16 N/A2009-05-2634.376%
17pteVam1Pteropus
vampyrus
Megabat Jul. 2008 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2008-10-15 N/A2009-05-2145.416%
18loxAfr2Loxodonta
africana
Elephant Jul. 2008 Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000) 2008-10-07 N/A2009-05-2835.153%
19felCat3Felis
catus
Cat Mar. 2006 Broad Release 3 2006-10-16 N/A2009-05-1435.717%
20canFam2Canis
lupus
familiaris
Dog May 2005 Broad Institute v. 2.0 2005-07-10 N/A2009-05-1452.879%
21dasNov2Dasypus
novemcinctus
Armadillo Jul. 2008 Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2008-10-07 N/A2009-05-2733.543%
22oryCun1Oryctolagus
cuniculus
Rabbit May 2005 Broad May 2005 2005-05-22 N/AN/AN/A
23myoLuc1Myotis
lucifugus
Microbat Mar. 2006 Broad Institute myoLuc1 2008-07-29 N/AN/AN/A
24bosTau4Bos
taurus
Cow Oct. 2007 Baylor Release 4.0 2008-03-10 N/A2009-05-2146.507%
25cavPor3Cavia
porcellus
Guinea Pig Feb. 2008 Broad Institute cavPor3 2008-04-05 2008-04-082009-05-22N/A
26proCap1Procavia
capensis
Rock hyrax Jul. 2008 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2008-10-16 N/A2009-05-2630.864%
27dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2008-10-15 N/AN/AN/A
28ochPri2Ochotona
princeps
Pika Jul. 2008 Broad Institute ochPri2 2008-07-28 N/AN/AN/A
29eriEur1Erinaceus
europaeus
Hedgehog June 2006 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2008-10-21 2008-10-21N/AN/A
30echTel1Echinops
telfairi
Tenrec July 2005 Broad July 2005 2005-08-04 N/A2009-05-2823.120%
31mm9Mus
musculus
Mouse July 2007 NCBI Build 37 2007-07-20 N/A2009-05-1335.299%
32rn4Rattus
norvegicus
Rat Nov. 2004 Baylor HGSC v. 3.4 2006-03-16 N/A2009-05-1332.879%
33sorAra1Sorex
araneus
Shrew June 2006 Broad Institute sorAra1 (Draft_v2) 2008-10-20 2008-10-21N/AN/A
34macEug1Macropus
eugenii
Wallaby Nov. 2007 Baylor Release 1.0 N/A 2008-12-26N/AN/A
35monDom5Monodelphis
domestica
Opossum Oct. 2006 Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2008-11-26 2008-12-02N/AN/A
36ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 WUSTL version 5.0.1 2007-07-20 N/A2009-05-277.627%
37galGal3Gallus
gallus
Chicken May 2006 Chicken Genome Sequencing Consortium May 2006 release 2006-05-18 2007-01-022009-05-143.591%
38taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 Washington University taeGut1 2009-02-04 2008-08-052009-05-263.496%
39anoCar1Anolis
carolinensis
Lizard Feb. 2007 Broad Institute AnoCar (1.0) 2007-03-07 2007-02-16N/AN/A
40xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 JGI v4.1 2006-04-17 2007-02-202009-05-273.176%
41gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2006-10-17 2006-12-052009-05-141.916%
42fr2Takifugu
rubripes
Fugu Oct. 2004 JGI V4.0 2007-03-07 2007-01-222009-05-201.702%
43danRer5Danio
rerio
Zebrafish July 2007 Wellcome Trust Sanger Institute, Zv7 assembly 2007-09-05 N/A2009-05-262.562%
44tetNig1Tetraodon
nigroviridis
Tetraodon Feb. 2004 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000) 2004-08-17 2006-12-052009-05-142.003%
45oryLat2Oryzias
latipes
Medaka Oct. 2005 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2008-08-12 2008-08-142009-05-221.849%
46petMar1Petromyzon
marinus
Lamprey Mar. 2007 WUSTL v.3.0 (March 2007) N/A 2008-01-282009-05-141.082%