Hg19 conservation alignment

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see also

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-04-24 N/AN/AN/A
02panTro2Pan
troglodytes
Chimp Mar. 2006 Washington University Build 2 Version 1 2006-03-24 N/A2009-03-2094.846%
03gorGor1Gorilla
gorilla
gorilla
Gorilla Oct. 2008 Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) 2008-11-03 N/A2009-03-2259.484%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 WUSTL 3.0 2007-09-15 N/AN/AN/A
05rheMac2Macaca
mulatta
Rhesus Jan. 2006 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2006-01-30 N/AN/AN/A
06papHam1Papio
hamadryas
Baboon Nov. 2008 Baylor BCM HGSC Pham_1.0 2009-05-13 N/AN/AN/A
07calJac1Callithrix
jacchus
Marmoset June 2007 WUSTL 2.0.2 2007-08-23 N/AN/AN/A
08otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 Broad version 1 (NCBI project 16955, AAQR00000000) 2006-12-20 N/AN/AN/A
09micMur1Microcebus
murinus
Mouse lemur Jun. 2003 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2008-08-03 N/AN/AN/A
10tupBel1Tupaia
belangeri
TreeShrew Dec. 2006 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2008-10-15 N/AN/AN/A
11sorAra1Sorex
araneus
Shrew June 2006 Broad Institute sorAra1 (Draft_v2) 2008-10-20 2008-10-21N/AN/A
12mm9Mus
musculus
Mouse July 2007 NCBI Build 37 2007-07-20 N/A2009-05-13N/A
13rn4Rattus
norvegicus
Rat Nov. 2004 Baylor HGSC v. 3.4 2006-03-16 N/AN/AN/A
14speTri1Spermophilus
tridecemlineatus
Squirrel Feb. 2008 Broad Institute speTri1 2008-08-03 N/AN/AN/A
15cavPor3Cavia
porcellus
Guinea Pig Feb. 2008 Broad Institute cavPor3 2008-04-05 2008-04-08N/AN/A
16oryCun1Oryctolagus
cuniculus
Rabbit May 2005 Broad May 2005 2005-05-22 N/AN/AN/A
17ochPri2Ochotona
princeps
Pika Jul. 2008 Broad Institute ochPri2 2008-07-28 N/AN/AN/A
18eriEur1Erinaceus
europaeus
Hedgehog June 2006 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2008-10-21 2008-10-21N/AN/A
19felCat3Felis
catus
Cat Mar. 2006 Broad Release 3 2006-10-16 N/AN/AN/A
20canFam2Canis
lupus
familiaris
Dog May 2005 Broad Institute v. 2.0 2005-07-10 N/AN/AN/A
21equCab2Equus
caballus
Horse Sep. 2007 Broad Institute EquCab2 2008-04-03 N/AN/AN/A
22vicPac1Vicugna
pacos
Alpaca Jul. 2008 Broad Institute vicPac1 2008-10-17 N/AN/AN/A
23pteVam1Pteropus
vampyrus
Megabat Jul. 2008 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2008-10-15 N/AN/AN/A
24myoLuc1Myotis
lucifugus
Microbat Mar. 2006 Broad Institute myoLuc1 2008-07-29 N/AN/AN/A
25turTru1Tursiops
truncatus
Dolphin Feb. 2008 Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2008-10-15 N/AN/AN/A
26bosTau4Bos
taurus
Cow Oct. 2007 Baylor Release 4.0 2008-03-10 N/AN/AN/A
27choHof1Choloepus
hoffmanni
Sloth Jul. 2008 Broad Institute choHof1 2008-10-16 N/AN/AN/A
28tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2008-10-15 N/AN/AN/A
29dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2008-10-15 N/AN/AN/A
30proCap1Procavia
capensis
Rock hyrax Jul. 2008 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2008-10-16 N/AN/AN/A
31macEug1Macropus
eugenii
Wallaby Nov. 2007 Baylor Release 1.0 N/A 2008-12-26N/AN/A
32dasNov1Dasypus
novemcinctus
Armadillo May 2005 Broad May 2005 2005-05-23 N/AN/AN/A
33echTel1Echinops
telfairi
Tenrec July 2005 Broad July 2005 2005-08-04 N/AN/AN/A
34loxAfr2Loxodonta
africana
Elephant Jul. 2008 Broad Institute loxAfr2 (NCBI project 12569, AAGU02000000) 2008-10-07 N/AN/AN/A
35dasNov2Dasypus
novemcinctus
Armadillo Jul. 2008 Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2008-10-07 N/AN/AN/A
36monDom5Monodelphis
domestica
Opossum Oct. 2006 Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2008-11-26 2008-12-02N/AN/A
37ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 WUSTL version 5.0.1 2007-07-20 N/AN/AN/A
38galGal3Gallus
gallus
Chicken May 2006 Chicken Genome Sequencing Consortium May 2006 release 2006-05-18 2007-01-02N/AN/A
39taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 Washington University taeGut1 2009-02-04 2008-08-05N/AN/A
40anoCar1Anolis
carolinensis
Lizard Feb. 2007 Broad Institute AnoCar (1.0) 2007-03-07 2007-02-16N/AN/A
41xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 JGI v4.1 2006-04-17 2007-02-20N/AN/A
42danRer5Danio
rerio
Zebrafish July 2007 Wellcome Trust Sanger Institute, Zv7 assembly 2007-09-05 N/AN/AN/A
43tetNig1Tetraodon
nigroviridis
Tetraodon Feb. 2004 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000) 2004-08-17 2006-12-05N/AN/A
44fr2Takifugu
rubripes
Fugu Oct. 2004 JGI V4.0 2007-03-07 2007-01-22N/AN/A
45gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2006-10-17 2006-12-05N/AN/A
46oryLat2Oryzias
latipes
Medaka Oct. 2005 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2008-08-12 2008-08-14N/AN/A
47petMar1Petromyzon
marinus
Lamprey Mar. 2007 WUSTL v.3.0 (March 2007) N/A 2008-01-28N/AN/A