Hg38 100-way conservation lastz parameters: Difference between revisions

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Line 76: Line 76:
   <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD>
   <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD>
   <TD ALIGN=RIGHT>90.470%</TD></TR>
   <TD ALIGN=RIGHT>90.470%</TD></TR>
<TR>
  <TH>Rhesus&nbsp;rheMac3</TH>
  <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
  <TD>15000</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
  <TD>2015-04-09</TD><TD ALIGN=RIGHT>80.828%</TD>
  <TD ALIGN=RIGHT>88.220%</TD></TR>
<TR>
<TR>
   <TH>Crab-eating macaque&nbsp;macFas5</TH>
   <TH>Crab-eating macaque&nbsp;macFas5</TH>
Line 82: Line 88:
   <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD>
   <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD>
   <TD ALIGN=RIGHT>87.749%</TD></TR>
   <TD ALIGN=RIGHT>87.749%</TD></TR>
<TR>
  <TH>Rhesus&nbsp;rheMac3</TH>
  <TD>no</TD><TD>254</TD><TD>4500</TD><TD>3000</TD><TD>human_chimp.v2.q</TD>
  <TD>15000</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>150</TD><TD>2000</TD><TD>600</TD><TD>2</TD>
  <TD>2014-01-28</TD><TD ALIGN=RIGHT>79.729%</TD>
  <TD ALIGN=RIGHT>86.715%</TD></TR>
<TR>
<TR>
   <TH>Baboon&nbsp;papAnu2</TH>
   <TH>Baboon&nbsp;papAnu2</TH>
Line 94: Line 94:
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD>
   <TD ALIGN=RIGHT>84.502%</TD></TR>
   <TD ALIGN=RIGHT>84.502%</TD></TR>
<TR>
  <TH>Squirrel monkey&nbsp;saiBol1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.saiBol1.tuning.Q.txt</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD>
  <TD ALIGN=RIGHT>81.466%</TD></TR>
<TR>
<TR>
   <TH>Green monkey&nbsp;chlSab2</TH>
   <TH>Green monkey&nbsp;chlSab2</TH>
Line 113: Line 107:
   <TD ALIGN=RIGHT>76.757%</TD></TR>
   <TD ALIGN=RIGHT>76.757%</TD></TR>
<TR>
<TR>
   <TH>Aardvark&nbsp;oryAfe1</TH>
   <TH>Squirrel monkey&nbsp;saiBol1</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.oryAfe1.tuning.Q.txt</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.saiBol1.tuning.Q.txt</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>36.526%</TD>
   <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD>
   <TD ALIGN=RIGHT>30.701%</TD></TR>
   <TD ALIGN=RIGHT>81.466%</TD></TR>
<TR>
<TR>
   <TH>Bushbaby&nbsp;otoGar3</TH>
   <TH>Bushbaby&nbsp;otoGar3</TH>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.otoGar3.tuning.Q.txt</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD>2014-12-13</TD><TD ALIGN=RIGHT>49.485%</TD>
   <TD>2015-02-23</TD><TD ALIGN=RIGHT>53.196%</TD>
  <TD ALIGN=RIGHT>60.561%</TD></TR>
   <TD ALIGN=RIGHT>64.899%</TD></TR>
<TR>
  <TH>White rhinoceros&nbsp;cerSim1</TH>
  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.cerSim1.tuning.Q.txt</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>53.075%</TD>
   <TD ALIGN=RIGHT>64.822%</TD></TR>
<TR>
  <TH>Cape golden mole&nbsp;chrAsi1</TH>
  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.chrAsi1.tuning.Q.txt</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-11</TD><TD ALIGN=RIGHT>29.208%</TD>
  <TD ALIGN=RIGHT>25.571%</TD></TR>
<TR>
  <TH>Big brown bat&nbsp;eptFus1</TH>
  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.eptFus1.tuning.Q.txt</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-11</TD><TD ALIGN=RIGHT>36.386%</TD>
  <TD ALIGN=RIGHT>58.072%</TD></TR>
<TR>
<TR>
   <TH>Chinese tree shrew&nbsp;tupChi1</TH>
   <TH>Chinese tree shrew&nbsp;tupChi1</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.tupChi1.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-10</TD><TD ALIGN=RIGHT>37.022%</TD>
   <TD>2015-02-19</TD><TD ALIGN=RIGHT>45.256%</TD>
   <TD ALIGN=RIGHT>41.180%</TD></TR>
   <TD ALIGN=RIGHT>50.350%</TD></TR>
<TR>
<TR>
   <TH>Horse&nbsp;equCab2</TH>
   <TH>Squirrel&nbsp;speTri2</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.equCab2.tuning.Q.txt</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>52.083%</TD>
   <TD>2015-04-29</TD><TD ALIGN=RIGHT>48.283%</TD>
   <TD ALIGN=RIGHT>62.447%</TD></TR>
   <TD ALIGN=RIGHT>61.854%</TD></TR>
<TR>
<TR>
   <TH>Bactrian camel&nbsp;camFer1</TH>
   <TH>Lesser Egyptian jerboa&nbsp;jacJac1</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.camFer1.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>46.206%</TD>
   <TD>2015-02-19</TD><TD ALIGN=RIGHT>34.153%</TD>
   <TD ALIGN=RIGHT>N/A</TD></TR>
   <TD ALIGN=RIGHT>40.300%</TD></TR>
<TR>
<TR>
   <TH>Alpaca&nbsp;vicPac2</TH>
   <TH>Prairie vole&nbsp;micOch1</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.vicPac2.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>45.887%</TD>
   <TD>2015-02-14</TD><TD ALIGN=RIGHT>31.489%</TD>
   <TD ALIGN=RIGHT>64.565%</TD></TR>
   <TD ALIGN=RIGHT>43.539%</TD></TR>
<TR>
<TR>
   <TH>Dolphin&nbsp;turTru2</TH>
   <TH>Chinese hamster&nbsp;criGri1</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.turTru2.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>46.072%</TD>
   <TD>2015-02-20</TD><TD ALIGN=RIGHT>33.169%</TD>
   <TD ALIGN=RIGHT>56.998%</TD></TR>
   <TD ALIGN=RIGHT>42.426%</TD></TR>
<TR>
<TR>
   <TH>Dog&nbsp;canFam3</TH>
   <TH>Golden hamster&nbsp;mesAur1</TH>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2014-01-27</TD><TD ALIGN=RIGHT>49.978%</TD>
   <TD>2015-02-19</TD><TD ALIGN=RIGHT>30.803%</TD>
   <TD ALIGN=RIGHT>60.083%</TD></TR>
   <TD ALIGN=RIGHT>43.095%</TD></TR>
<TR>
<TR>
   <TH>Killer whale&nbsp;orcOrc1</TH>
   <TH>Mouse&nbsp;mm10</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.orcOrc1.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-11</TD><TD ALIGN=RIGHT>47.281%</TD>
   <TD>2015-04-09</TD><TD ALIGN=RIGHT>31.653%</TD>
   <TD ALIGN=RIGHT>60.190%</TD></TR>
   <TD ALIGN=RIGHT>35.372%</TD></TR>
<TR>
<TR>
   <TH>Squirrel&nbsp;speTri2</TH>
   <TH>Rat&nbsp;rn6</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.speTri2.tuning.Q.txt</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-10</TD><TD ALIGN=RIGHT>44.729%</TD>
   <TD>2015-02-14</TD><TD ALIGN=RIGHT>31.077%</TD>
   <TD ALIGN=RIGHT>57.271%</TD></TR>
   <TD ALIGN=RIGHT>34.899%</TD></TR>
<TR>
<TR>
  <TH>Black flying-fox&nbsp;pteAle1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Pig&nbsp;susScr3</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Elephant&nbsp;loxAfr3</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Naked mole-rat&nbsp;hetGla2</TH>
   <TH>Naked mole-rat&nbsp;hetGla2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TH>Megabat&nbsp;pteVam1</TH>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>46.248%</TD>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>58.855%</TD></TR>
</TR><TR>
<TR>
   <TH>Cat&nbsp;felCat8</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Panda&nbsp;ailMel1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Ferret &nbsp;musFur1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Guinea pig&nbsp;cavPor3</TH>
   <TH>Guinea pig&nbsp;cavPor3</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Armadillo&nbsp;dasNov3</TH>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>42.371%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD ALIGN=RIGHT>48.000%</TD></TR>
</TR><TR>
<TR>
  <TH>Chinchilla&nbsp;chiLan1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.665%</TD>
  <TD ALIGN=RIGHT>58.002%</TD></TR>
<TR>
   <TH>Brush-tailed rat&nbsp;octDeg1</TH>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-24</TD><TD ALIGN=RIGHT>40.238%</TD>
  <TD ALIGN=RIGHT>47.651%</TD></TR>
<TR>
   <TH>Rabbit&nbsp;oryCun2</TH>
   <TH>Rabbit&nbsp;oryCun2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>42.911%</TD>
  <TD ALIGN=RIGHT>48.360%</TD></TR>
<TR>
  <TH>Pika&nbsp;ochPri3</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>33.618%</TD>
  <TD ALIGN=RIGHT>49.837%</TD></TR>
<TR>
  <TH>Pig&nbsp;susScr3</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>44.676%</TD>
  <TD ALIGN=RIGHT>57.273%</TD></TR>
<TR>
  <TH>Alpaca&nbsp;vicPac2</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>48.909%</TD>
  <TD ALIGN=RIGHT>68.755%</TD></TR>
<TR>
  <TH>Bactrian camel&nbsp;camFer1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-24</TD><TD ALIGN=RIGHT>49.095%</TD>
  <TD ALIGN=RIGHT>71.268%</TD></TR>
<TR>
  <TH>Dolphin&nbsp;turTru2</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>49.728%</TD>
  <TD ALIGN=RIGHT>61.393%</TD></TR>
<TR>
  <TH>Killer whale&nbsp;orcOrc1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>50.709%</TD>
  <TD ALIGN=RIGHT>64.364%</TD></TR>
<TR>
   <TH>Tibetan antelope&nbsp;panHod1</TH>
   <TH>Tibetan antelope&nbsp;panHod1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TH>Weddell seal&nbsp;lepWed1</TH>
   <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.619%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>52.526%</TD></TR>
</TR><TR>
<TR>
  <TH>Pacific walrus&nbsp;odoRosDiv1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>David's myotis (bat)&nbsp;myoDav1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Cow&nbsp;bosTau8</TH>
   <TH>Cow&nbsp;bosTau8</TH>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
Line 241: Line 244:
   <TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD>
   <TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD>
   <TD ALIGN=RIGHT>50.440%</TD></TR>
   <TD ALIGN=RIGHT>50.440%</TD></TR>
<TR>
  <TH>Sheep&nbsp;oviAri3</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>2</TD>
  <TD>2015-04-27</TD><TD ALIGN=RIGHT>45.352%</TD>
  <TD ALIGN=RIGHT>51.787%</TD></TR>
<TR>
<TR>
   <TH>Domestic goat&nbsp;capHir1</TH>
   <TH>Domestic goat&nbsp;capHir1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Sheep&nbsp;oviAri3</TH>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.257%</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>hg38.oviAri3.tuning.Q.txt</TD>
  <TD ALIGN=RIGHT>52.668%</TD></TR>
<TR>
  <TH>Horse&nbsp;equCab2</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-23</TD><TD ALIGN=RIGHT>55.459%</TD>
  <TD ALIGN=RIGHT>66.600%</TD></TR>
<TR>
  <TH>White rhinoceros&nbsp;cerSim1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-23</TD><TD ALIGN=RIGHT>56.633%</TD>
  <TD ALIGN=RIGHT>69.232%</TD></TR>
<TR>
  <TH>Cat&nbsp;felCat8</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>51.684%</TD>
  <TD ALIGN=RIGHT>58.750%</TD></TR>
<TR>
  <TH>Dog&nbsp;canFam3</TH>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-10</TD><TD ALIGN=RIGHT>50.395%</TD>
  <TD ALIGN=RIGHT>60.861%</TD></TR>
<TR>
   <TH>Ferret &nbsp;musFur1</TH>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>49.631%</TD>
  <TD ALIGN=RIGHT>62.396%</TD></TR>
<TR>
  <TH>Panda&nbsp;ailMel1</TH>
  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>hg38.ailMel1.tuning.Q.txt</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-01-21</TD><TD ALIGN=RIGHT>41.193%</TD>
   <TD>2015-02-12</TD><TD ALIGN=RIGHT>48.226%</TD>
   <TD ALIGN=RIGHT>47.075%</TD></TR>
  <TD ALIGN=RIGHT>61.650%</TD></TR>
<TR>
  <TH>Pacific walrus&nbsp;odoRosDiv1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>52.193%</TD>
   <TD ALIGN=RIGHT>64.897%</TD></TR>
<TR>
  <TH>Weddell seal&nbsp;lepWed1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>51.073%</TD>
  <TD ALIGN=RIGHT>65.642%</TD></TR>
<TR>
  <TH>Black flying-fox&nbsp;pteAle1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>48.281%</TD>
  <TD ALIGN=RIGHT>71.168%</TD></TR>
<TR>
  <TH>Megabat&nbsp;pteVam1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>43.924%</TD>
  <TD ALIGN=RIGHT>69.545%</TD></TR>
<TR>
  <TH>Big brown bat&nbsp;eptFus1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-24</TD><TD ALIGN=RIGHT>39.123%</TD>
  <TD ALIGN=RIGHT>62.229%</TD></TR>
<TR>
  <TH>David's myotis (bat)&nbsp;myoDav1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>38.713%</TD>
  <TD ALIGN=RIGHT>60.286%</TD></TR>
<TR>
<TR>
   <TH>Microbat&nbsp;myoLuc2</TH>
   <TH>Microbat&nbsp;myoLuc2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-28</TD><TD ALIGN=RIGHT>38.591%</TD>
  <TD ALIGN=RIGHT>59.729%</TD></TR>
<TR>
  <TH>Hedgehog&nbsp;eriEur2</TH>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>25.488%</TD>
  <TD ALIGN=RIGHT>31.297%</TD></TR>
<TR>
  <TH>Shrew&nbsp;sorAra2</TH>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-20</TD><TD ALIGN=RIGHT>26.905%</TD>
  <TD ALIGN=RIGHT>35.760%</TD></TR>
<TR>
  <TH>Star-nosed mole&nbsp;conCri1</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>35.911%</TD>
  <TD ALIGN=RIGHT>61.017%</TD></TR>
<TR>
  <TH>Elephant&nbsp;loxAfr3</TH>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.214%</TD>
  <TD ALIGN=RIGHT>42.303%</TD></TR>
<TR>
   <TH>Cape elephant shrew&nbsp;eleEdw1</TH>
   <TH>Cape elephant shrew&nbsp;eleEdw1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>26.839%</TD>
  <TD ALIGN=RIGHT>24.181%</TD></TR>
<TR>
   <TH>Manatee&nbsp;triMan1</TH>
   <TH>Manatee&nbsp;triMan1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Lesser Egyptian jerboa&nbsp;jacJac1</TH>
   <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.346%</TD>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>46.939%</TD></TR>
</TR><TR>
<TR>
   <TH>Chinchilla&nbsp;chiLan1</TH>
   <TH>Cape golden mole&nbsp;chrAsi1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
   <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Star-nosed mole&nbsp;conCri1</TH>
   <TD>2015-02-20</TD><TD ALIGN=RIGHT>33.314%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>29.068%</TD></TR>
</TR><TR>
<TR>
  <TH>Brush-tailed rat&nbsp;octDeg1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Pika&nbsp;ochPri3</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Hedgehog&nbsp;eriEur2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Tenrec&nbsp;echTel2</TH>
   <TH>Tenrec&nbsp;echTel2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
</TR><TR>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Mouse&nbsp;mm10</TH>
  <TD>2015-04-29</TD><TD ALIGN=RIGHT>29.310%</TD>
   <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD ALIGN=RIGHT>32.753%</TD></TR>
   <TD>9400</TD><TD>lastz-distrib-1.03.52/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
<TR>
   <TD>2014-01-25</TD><TD ALIGN=RIGHT>31.629%</TD>
  <TH>Aardvark&nbsp;oryAfe1</TH>
   <TD ALIGN=RIGHT>35.323%</TD></TR>
  <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-04-23</TD><TD ALIGN=RIGHT>40.563%</TD>
  <TD ALIGN=RIGHT>34.102%</TD></TR>
<TR>
   <TH>Armadillo&nbsp;dasNov3</TH>
   <TD>no</TD><TD>254</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>9400</TD><TD>lastz-distrib-1.03.66/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.349%</TD>
   <TD ALIGN=RIGHT>41.895%</TD></TR>
<TR>
<TR>
  <TH>Rat&nbsp;rn6</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Chinese hamster&nbsp;criGri1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Golden hamster&nbsp;mesAur1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Prairie vole&nbsp;micOch1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Shrew&nbsp;sorAra2</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Wallaby&nbsp;macEug2</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Opossum&nbsp;monDom5</TH>
   <TH>Opossum&nbsp;monDom5</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
Line 312: Line 402:
<TR>
<TR>
   <TH>Tasmanian devil&nbsp;sarHar1</TH>
   <TH>Tasmanian devil&nbsp;sarHar1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Spiny softshell turtle&nbsp;apaSpi1</TH>
  <TD>2015-02-14</TD><TD ALIGN=RIGHT>12.754%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD ALIGN=RIGHT>12.925%</TD></TR>
</TR><TR>
<TR>
  <TH>Wallaby&nbsp;macEug2</TH>
  <TD>no</TD><TD>0</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>6.378%</TD>
  <TD ALIGN=RIGHT>7.213%</TD></TR>
<TR>
  <TH>Platypus&nbsp;ornAna1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>7.769%</TD>
  <TD ALIGN=RIGHT>11.784%</TD></TR>
<TR>
  <TH>Rock pigeon&nbsp;colLiv1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.712%</TD>
  <TD ALIGN=RIGHT>10.220%</TD></TR>
<TR>
  <TH>Saker falcon&nbsp;falChe1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.828%</TD>
  <TD ALIGN=RIGHT>9.878%</TD></TR>
<TR>
  <TH>Peregrine falcon&nbsp;falPer1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.926%</TD>
  <TD ALIGN=RIGHT>10.027%</TD></TR>
<TR>
  <TH>Collared flycatcher&nbsp;ficAlb2</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.822%</TD>
  <TD ALIGN=RIGHT>10.748%</TD></TR>
<TR>
  <TH>White-throated sparrow&nbsp;zonAlb1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.494%</TD>
  <TD ALIGN=RIGHT>10.570%</TD></TR>
<TR>
  <TH>Medium ground finch&nbsp;geoFor1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.445%</TD>
  <TD ALIGN=RIGHT>10.366%</TD></TR>
<TR>
  <TH>Zebra finch&nbsp;taeGut2</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>5.893%</TD>
  <TD ALIGN=RIGHT>12.356%</TD></TR>
<TR>
  <TH>Tibetan ground jay&nbsp;pseHum1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>5.146%</TD>
  <TD ALIGN=RIGHT>11.937%</TD></TR>
<TR>
  <TH>Budgerigar&nbsp;melUnd1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.474%</TD>
  <TD ALIGN=RIGHT>9.862%</TD></TR>
<TR>
  <TH>Parrot&nbsp;amaVit1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.186%</TD>
  <TD ALIGN=RIGHT>9.480%</TD></TR>
<TR>
  <TH>Scarlet Macaw&nbsp;araMac1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-17</TD><TD ALIGN=RIGHT>3.787%</TD>
  <TD ALIGN=RIGHT>9.039%</TD></TR>
<TR>
  <TH>Mallard duck&nbsp;anaPla1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.268%</TD>
  <TD ALIGN=RIGHT>9.679%</TD></TR>
<TR>
  <TH>Chicken&nbsp;galGal4</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.696%</TD>
  <TD ALIGN=RIGHT>10.888%</TD></TR>
<TR>
   <TH>Turkey&nbsp;melGal1</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.328%</TD>
  <TD ALIGN=RIGHT>10.927%</TD></TR>
<TR>
  <TH>American alligator&nbsp;allMis1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-14</TD><TD ALIGN=RIGHT>7.561%</TD>
  <TD ALIGN=RIGHT>8.665%</TD></TR>
<TR>
   <TH>Green seaturtle&nbsp;cheMyd1</TH>
   <TH>Green seaturtle&nbsp;cheMyd1</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
Line 330: Line 522:
<TR>
<TR>
   <TH>Chinese softshell turtle&nbsp;pelSin1</TH>
   <TH>Chinese softshell turtle&nbsp;pelSin1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Platypus&nbsp;ornAna1</TH>
   <TD>2015-02-14</TD><TD ALIGN=RIGHT>5.716%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD ALIGN=RIGHT>7.207%</TD></TR>
</TR><TR>
<TR>
   <TH>American alligator&nbsp;allMis1</TH>
   <TH>Spiny softshell turtle&nbsp;apaSpi1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Rock pigeon&nbsp;colLiv1</TH>
   <TD>2015-02-14</TD><TD ALIGN=RIGHT>4.611%</TD>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>6.320%</TD></TR>
</TR><TR>
<TR>
   <TH>Chicken&nbsp;galGal4</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>Lizard&nbsp;anoCar2</TH>
   <TH>Lizard&nbsp;anoCar2</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
Line 350: Line 539:
   <TD ALIGN=RIGHT>5.222%</TD></TR>
   <TD ALIGN=RIGHT>5.222%</TD></TR>
<TR>
<TR>
  <TH>Mallard duck&nbsp;anaPla1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Turkey&nbsp;melGal1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Saker falcon&nbsp;falChe1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Peregrine falcon&nbsp;falPer1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Parrot&nbsp;amaVit1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Scarlet Macaw&nbsp;araMac1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Tibetan ground jay&nbsp;pseHum1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Budgerigar&nbsp;melUnd1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Collared flycatcher&nbsp;ficAlb2</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>White-throated sparrow&nbsp;zonAlb1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Medium ground finch&nbsp;geoFor1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Zebra finch&nbsp;taeGut2</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Spotted gar&nbsp;lepOcu1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
   <TH>X. tropicalis&nbsp;xenTro7</TH>
   <TH>X. tropicalis&nbsp;xenTro7</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>3.811%</TD>
  <TD ALIGN=RIGHT>7.967%</TD></TR>
<TR>
   <TH>Coelacanth&nbsp;latCha1</TH>
   <TH>Coelacanth&nbsp;latCha1</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Atlantic cod&nbsp;gadMor1</TH>
  <TD>2015-02-20</TD><TD ALIGN=RIGHT>2.873%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
  <TD ALIGN=RIGHT>3.449%</TD></TR>
</TR><TR>
<TR>
   <TH>Stickleback&nbsp;gasAcu1</TH>
   <TH>Tetraodon&nbsp;tetNig2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.743%</TD>
  <TD ALIGN=RIGHT>14.323%</TD></TR>
<TR>
  <TH>Fugu&nbsp;fr3</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.784%</TD>
  <TD ALIGN=RIGHT>12.394%</TD></TR>
<TR>
   <TH>Yellowbelly pufferfish&nbsp;takFla1</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.548%</TD>
  <TD ALIGN=RIGHT>11.317%</TD></TR>
<TR>
   <TH>Nile tilapia&nbsp;oreNil2</TH>
   <TH>Nile tilapia&nbsp;oreNil2</TH>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
</TR><TR>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TH>Tetraodon&nbsp;tetNig2</TH>
   <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.868%</TD>
   <TD COLSPAN=14 ALIGN=center>TBD</TD>
   <TD ALIGN=RIGHT>6.241%</TD></TR>
</TR><TR>
<TR>
   <TH>Princess of Burundi&nbsp;neoBri1</TH>
   <TH>Princess of Burundi&nbsp;neoBri1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Yellowbelly pufferfish&nbsp;takFla1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Burton's mouthbreeder&nbsp;hapBur1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Fugu&nbsp;fr3</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Mexican tetra (cavefish)&nbsp;astMex1</TH>
  <TD COLSPAN=14 ALIGN=center>TBD</TD>
</TR><TR>
  <TH>Lamprey&nbsp;petMar2</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.265%</TD>
   <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.767%</TD>
   <TD ALIGN=RIGHT>3.960%</TD></TR>
   <TD ALIGN=RIGHT>6.840%</TD></TR>
<TR>
<TR>
   <TH>Zebrafish&nbsp;danRer10</TH>
   <TH>Burton's mouthbreeder&nbsp;hapBur1</TH>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2015-02-08</TD><TD ALIGN=RIGHT>3.357%</TD>
   <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.783%</TD>
   <TD ALIGN=RIGHT>7.110%</TD></TR>
   <TD ALIGN=RIGHT>6.861%</TD></TR>
<TR>
<TR>
   <TH>Zebra Mbuna&nbsp;mayZeb1</TH>
   <TH>Zebra Mbuna&nbsp;mayZeb1</TH>
Line 457: Line 610:
   <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD>
   <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD>
   <TD ALIGN=RIGHT>7.435%</TD></TR>
   <TD ALIGN=RIGHT>7.435%</TD></TR>
<TR>
  <TH>Stickleback&nbsp;gasAcu1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>2.080%</TD>
  <TD ALIGN=RIGHT>11.956%</TD></TR>
<TR>
  <TH>Atlantic cod&nbsp;gadMor1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.660%</TD>
  <TD ALIGN=RIGHT>6.911%</TD></TR>
<TR>
  <TH>Zebrafish&nbsp;danRer10</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-08</TD><TD ALIGN=RIGHT>3.357%</TD>
  <TD ALIGN=RIGHT>7.110%</TD></TR>
<TR>
  <TH>Mexican tetra (cavefish)&nbsp;astMex1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-18</TD><TD ALIGN=RIGHT>2.225%</TD>
  <TD ALIGN=RIGHT>6.365%</TD></TR>
<TR>
  <TH>Spotted gar&nbsp;lepOcu1</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-19</TD><TD ALIGN=RIGHT>2.511%</TD>
  <TD ALIGN=RIGHT>6.634%</TD></TR>
<TR>
  <TH>Lamprey&nbsp;petMar2</TH>
  <TD>no</TD><TD>50</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz-distrib-1.03.54/bin/lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
  <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.265%</TD>
  <TD ALIGN=RIGHT>3.960%</TD></TR>
</TABLE>
</TABLE>

Latest revision as of 19:57, 14 May 2015

See Also


The default
scoring matrix is:
  The HoxD55
scoring matrix is:
 The human-chimp.v2
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

 
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

 
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

O=600 E=150

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of hg38
matched
(chainLink table)
% of query
matched
(chainLinkHg38)
Chimp panTro4 no25445003000human_chimp.v2.q 15000lastz-distrib-1.03.52/bin/lastz15020006002 2014-05-2793.112% 95.664%
Gorilla gorGor3 no25430003000hg38.gorGor3.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1588.005% 91.695%
Orangutan ponAbe2 no25445003000human_chimp.v2.q 15000lastz-distrib-1.03.52/bin/lastz15020006002 2014-09-0289.187% 89.656%
Gibbon nomLeu3 no25430003000hg38.nomLeu3.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1286.379% 90.470%
Rhesus rheMac3 no25445003000human_chimp.v2.q 15000lastz-distrib-1.03.66/bin/lastz15020006002 2015-04-0980.828% 88.220%
Crab-eating macaque macFas5 no25430003000hg38.macFas5.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1485.675% 87.749%
Baboon papAnu2 no25430003000hg38.papAnu2.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1384.179% 84.502%
Green monkey chlSab2 no25445003000human_chimp.v2.q 15000lastz-distrib-1.03.52/bin/lastz15020006002 2014-07-1184.393% 88.264%
Marmoset calJac3 no25430003000hg38.calJac3.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1371.709% 76.757%
Squirrel monkey saiBol1 no25430003000hg38.saiBol1.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004002 2014-12-1370.565% 81.466%
Bushbaby otoGar3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004002 2015-02-2353.196% 64.899%
Chinese tree shrew tupChi1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1945.256% 50.350%
Squirrel speTri2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2948.283% 61.854%
Lesser Egyptian jerboa jacJac1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1934.153% 40.300%
Prairie vole micOch1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1431.489% 43.539%
Chinese hamster criGri1 no030003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-02-2033.169% 42.426%
Golden hamster mesAur1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1930.803% 43.095%
Mouse mm10 no030003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-0931.653% 35.372%
Rat rn6 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1431.077% 34.899%
Naked mole-rat hetGla2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2946.248% 58.855%
Guinea pig cavPor3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2842.371% 48.000%
Chinchilla chiLan1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2845.665% 58.002%
Brush-tailed rat octDeg1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2440.238% 47.651%
Rabbit oryCun2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2842.911% 48.360%
Pika ochPri3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2833.618% 49.837%
Pig susScr3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2944.676% 57.273%
Alpaca vicPac2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2948.909% 68.755%
Bactrian camel camFer1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2449.095% 71.268%
Dolphin turTru2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2949.728% 61.393%
Killer whale orcOrc1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2950.709% 64.364%
Tibetan antelope panHod1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2845.619% 52.526%
Cow bosTau8 no25430003000default 9400lastz3020004001 2014-10-1645.975% 50.440%
Sheep oviAri3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004002 2015-04-2745.352% 51.787%
Domestic goat capHir1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2845.257% 52.668%
Horse equCab2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-02-2355.459% 66.600%
White rhinoceros cerSim1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-02-2356.633% 69.232%
Cat felCat8 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2951.684% 58.750%
Dog canFam3 no030003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-1050.395% 60.861%
Ferret  musFur1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2949.631% 62.396%
Panda ailMel1 no5030003000hg38.ailMel1.tuning.Q.txt 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1248.226% 61.650%
Pacific walrus odoRosDiv1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2952.193% 64.897%
Weddell seal lepWed1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2951.073% 65.642%
Black flying-fox pteAle1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2948.281% 71.168%
Megabat pteVam1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2943.924% 69.545%
Big brown bat eptFus1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2439.123% 62.229%
David's myotis (bat) myoDav1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2838.713% 60.286%
Microbat myoLuc2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2838.591% 59.729%
Hedgehog eriEur2 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1925.488% 31.297%
Shrew sorAra2 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-2026.905% 35.760%
Star-nosed mole conCri1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2935.911% 61.017%
Elephant loxAfr3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2945.214% 42.303%
Cape elephant shrew eleEdw1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1926.839% 24.181%
Manatee triMan1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2945.346% 46.939%
Cape golden mole chrAsi1 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-2033.314% 29.068%
Tenrec echTel2 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2929.310% 32.753%
Aardvark oryAfe1 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2340.563% 34.102%
Armadillo dasNov3 no25430003000default 9400lastz-distrib-1.03.66/bin/lastz3020004001 2015-04-2945.349% 41.895%
Opossum monDom5 no5022006000HoxD55.q 3400lastz-distrib-1.03.52/bin/lastz3020004001 2014-05-2914.370% 11.996%
Tasmanian devil sarHar1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-1412.754% 12.925%
Wallaby macEug2 no030003000default 9400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-196.378% 7.213%
Platypus ornAna1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-137.769% 11.784%
Rock pigeon colLiv1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.712% 10.220%
Saker falcon falChe1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.828% 9.878%
Peregrine falcon falPer1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.926% 10.027%
Collared flycatcher ficAlb2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-184.822% 10.748%
White-throated sparrow zonAlb1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-184.494% 10.570%
Medium ground finch geoFor1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-194.445% 10.366%
Zebra finch taeGut2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-195.893% 12.356%
Tibetan ground jay pseHum1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-195.146% 11.937%
Budgerigar melUnd1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-194.474% 9.862%
Parrot amaVit1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.186% 9.480%
Scarlet Macaw araMac1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-173.787% 9.039%
Mallard duck anaPla1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.268% 9.679%
Chicken galGal4 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.696% 10.888%
Turkey melGal1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-134.328% 10.927%
American alligator allMis1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-147.561% 8.665%
Green seaturtle cheMyd1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-066.296% 7.960%
Painted turtle chrPic2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-066.708% 8.554%
Chinese softshell turtle pelSin1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-145.716% 7.207%
Spiny softshell turtle apaSpi1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-144.611% 6.320%
Lizard anoCar2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-063.593% 5.222%
X. tropicalis xenTro7 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-193.811% 7.967%
Coelacanth latCha1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-202.873% 3.449%
Tetraodon tetNig2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.743% 14.323%
Fugu fr3 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.784% 12.394%
Yellowbelly pufferfish takFla1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.548% 11.317%
Nile tilapia oreNil2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.868% 6.241%
Princess of Burundi neoBri1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.767% 6.840%
Burton's mouthbreeder hapBur1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.783% 6.861%
Zebra Mbuna mayZeb1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-071.805% 6.780%
Pundamilia nyererei punNye1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-061.787% 6.864%
Medaka oryLat2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-062.002% 6.853%
Southern platyfish xipMac1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-061.898% 7.435%
Stickleback gasAcu1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-182.080% 11.956%
Atlantic cod gadMor1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-181.660% 6.911%
Zebrafish danRer10 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-083.357% 7.110%
Mexican tetra (cavefish) astMex1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-182.225% 6.365%
Spotted gar lepOcu1 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-192.511% 6.634%
Lamprey petMar2 no5022006000HoxD55.q 3400lastz-distrib-1.03.54/bin/lastz3020004001 2015-02-061.265% 3.960%