High Throughput Genome Builds: Difference between revisions
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platypus(new + update), frog update, Stickleback(fish)(new + update), Medaka(fish), | platypus(new + update), frog update, Stickleback(fish)(new + update), Medaka(fish), | ||
rhesus update, chicken update, elephant, rabbit(new + update), pig(new + update), | rhesus update, chicken update, elephant, rabbit(new + update), pig(new + update), | ||
cat(new + update), fugu update | cat(new + update), fugu update, chimp update | ||
Revision as of 21:46, 30 May 2006
Input Requirements
AGP File, Sequence
Output Tracks
Gap. Gold, ChromInfo, GC5
Then Repeat Masking/Window Masker and trfBig
Produces rmsk/windowMask and simpleRepeats track
Early Tracks
Genscan, Genbank Scripts, CpG Islands
Map Closest protein set (human mostly)
Comparative Genomics
human and mouse
Candidate Genomes
platypus(new + update), frog update, Stickleback(fish)(new + update), Medaka(fish), rhesus update, chicken update, elephant, rabbit(new + update), pig(new + update), cat(new + update), fugu update, chimp update
