High Throughput Genome Builds

Input Requirements

AGP File, Sequence

Output Tracks

Gap. Gold, ChromInfo, GC5

Then Repeat Masking/Window Masker and trfBig

Produces rmsk/windowMask and simpleRepeats track

Early Tracks

Genscan, Genbank Scripts, CpG Islands

Comparative Genomics

human and mouse

Candidate Genomes

platypus(new + update), frog update, Stickleback(fish)(new + update), Medaka(fish), rhesus update, chicken update, elephant, rabbit(new + update), pig(new + update), cat(new + update), fugu update, chimp update