Implementation Notes

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Implementation Notes

This page is intended to serve as a sort of FAQ... specifically, for questions that QAers often have for developers about the murky inner workings of our system. Well, even if the questions aren't about those gnarly details, the answers are! :) This may also come in handy for mirror sites, but I'll try to keep it focused on matters of interest to QAers.

autoSql: generate .c, .h and .sql files from .as file

tableDescriptions: .as descriptions of database tables (buildTableDescriptions.pl vs. makeTableDescriptions)

CpG Islands: the difference between cpgIslandExt and cpgIslandGgfAndy{,Masked}

Chains and Nets