Medical Sequencing Data

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Medical Sequencing Data

Some combination of phenotype and genotype ... Details unknown. Worthwhile to design ?

Major Types of information

  • Environmental data - drugs, nutrition, exercise, location, etc...
  • Subjects
    • Anonymous individuals
    • Pools of people
    • family history
  • Genotype info
    • Microarray based
      • SNPs
      • Haplotype blocks
      • Copy number polymorphism
    • Sequence based
      • Random reads
      • PCR products
      • larger clones
      • single haplotype vs. diploid
  • Phenotype
    • Disease presence/absence or severity
    • Single physiological measure
      • Enzyme activity, measure of amount of substance
    • Parallel Measures
      • Microarray measurements, etc...