Mm10 conservation alignment: Difference between revisions

From genomewiki
Jump to navigationJump to search
(updated data with altered species list)
(fix assembly reference for mm10 to correct assembly)
 
(4 intermediate revisions by the same user not shown)
Line 25: Line 25:
</TR>
</TR>
<TR>
<TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/165668/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
   <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
Line 32: Line 32:
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TD>Nov.&nbsp;2004&nbsp;(Baylor&nbsp;3.4/rn4)</TD>
   <TD>Mar.&nbsp;2012&nbsp;(RGSC&nbsp;5.0/rn5)</TD>
   <TD>Baylor HGSC v. 3.4</TD>
   <TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>54.645%</TD>
   <TD>2012-03-26</TD><TD ALIGN=RIGHT>67.353%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
Line 46: Line 46:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.217%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Dipodomys<BR>ordii]</TD><TD>Kangaroo&nbsp;rat</TD>
   <TD>Jun.&nbsp;2003&nbsp;(Broad/micMur1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dipOrd1)</TD>
   <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
   <TD>Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-13</TD><TD ALIGN=RIGHT>26.636%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole&nbsp;rat</TD>
  <TD>Jan.&nbsp;2012&nbsp;(Broad&nbsp;HetGla_female_1.0/hetGla2)</TD>
  <TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD ALIGN=RIGHT>2012-04-14</TD>
  <TD>2012-04-14</TD><TD ALIGN=RIGHT>32.753%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.447%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/kangarooRat/Dipord1.0/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRO01 Dipodomys<BR>ordii]</TD><TD>Kangaroo&nbsp;rat</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dipOrd1)</TD>
   <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
   <TD>Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)</TD>
   <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>25.248%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/771 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Ochotona<BR>princeps]</TD><TD>Pika</TD>
   <TD>Oct.&nbsp;2011&nbsp;(SaiBol1.0/saiBol1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/ochPri2)</TD>
   <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
   <TD>Broad Institute ochPri2</TD>
   <TD ALIGN=RIGHT>2012-01-07</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-01-09</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.339%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>14.542%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/68323 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
   <TD>Jul.&nbsp;2011&nbsp;(HetGla_1.0/hetGla1)</TD>
   <TD>Dec.&nbsp;2006&nbsp;(Broad/tupBel1)</TD>
   <TD>HetGla_1.0 (NCBI project 68323, accession GCA_000230455.1)</TD>
   <TD>Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)</TD>
   <TD ALIGN=RIGHT>2011-12-03</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2011-12-06</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>32.163%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>19.766%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD>
   <TD>Feb.&nbsp;2009&nbsp;(GRCh37/hg19)</TD>
   <TD>Feb.&nbsp;2009&nbsp;(GRCh37/hg19)</TD>
   <TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD>
   <TD>GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)</TD>
Line 81: Line 95:
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>38.226%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Gorilla_gorilla/gorGor3.1/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABD02 Gorilla<BR>gorilla<BR>gorilla]</TD><TD>Gorilla</TD>
   <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
   <TD>May&nbsp;2011&nbsp;(gorGor3.1/gorGor3)</TD>
   <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
   <TD>Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)</TD>
Line 88: Line 102:
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>33.987%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD>
   <TD>Feb.&nbsp;2011&nbsp;(Pan_troglodytes-2.1.4/panTro4)</TD>
   <TD>Feb.&nbsp;2011&nbsp;(Pan_troglodytes-2.1.4/panTro4)</TD>
   <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
   <TD>CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)</TD>
Line 95: Line 109:
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13975 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TD>Jan.&nbsp;2010&nbsp;(GGSC&nbsp;Nleu1.0/nomLeu1)</TD>
   <TD>Jun.&nbsp;2011&nbsp;(GGSC&nbsp;Nleu1.1/nomLeu2)</TD>
   <TD>GGSC (NCBI project 13975, accession GCA_000146795.1)</TD>
   <TD>Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01)</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>34.132%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>34.031%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
   <TD>July&nbsp;2007&nbsp;(WUGSC&nbsp;2.0.2/ponAbe2)</TD>
   <TD>WUSTL 3.0</TD>
   <TD>WUSTL 3.0</TD>
Line 109: Line 123:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>34.496%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsius<BR>syrichta]</TD><TD>Tarsier</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tarsier/Tarsyr1.0/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT00 Tarsius<BR>syrichta]</TD><TD>Tarsier</TD>
   <TD>Aug.&nbsp;2008&nbsp;(Broad/tarSyr1)</TD>
   <TD>Aug.&nbsp;2008&nbsp;(Broad/tarSyr1)</TD>
   <TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD>
   <TD>Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)</TD>
Line 116: Line 130:
   <TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD>
   <TD>2012-03-12</TD><TD ALIGN=RIGHT>24.560%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Chinese&nbsp;rhesus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Chinese&nbsp;rhesus</TD>
   <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
   <TD>Oct.&nbsp;2010&nbsp;(BGI&nbsp;CR_1.0/rheMac3)</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
   <TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD>
Line 123: Line 137:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>33.931%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-p-Papio%20hamadryas.hgsc?pageLocation=Papio%20hamadryas Papio<BR>hamadryas]</TD><TD>Baboon</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;1.0/papHam1)</TD>
   <TD>Nov.&nbsp;2008&nbsp;(Baylor&nbsp;1.0/papHam1)</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
   <TD>Baylor BCM HGSC Pham_1.0</TD>
Line 130: Line 144:
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD>
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>33.577%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD>
   <TD>Mar.&nbsp;2011&nbsp;(Broad&nbsp;OtoGar3/otoGar3)</TD>
   <TD>Mar.&nbsp;2011&nbsp;(Broad&nbsp;OtoGar3/otoGar3)</TD>
   <TD>Broad Institute (GCA_000181295.3)</TD>
   <TD>Broad Institute (GCA_000181295.3)</TD>
Line 137: Line 151:
   <TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD>
   <TD>2012-03-13</TD><TD ALIGN=RIGHT>29.795%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>March&nbsp;2009&nbsp;(WUGSC&nbsp;3.2/calJac3)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
   <TD>WUSTL 3.2 (GCA_000004665.1)</TD>
Line 144: Line 158:
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD>
   <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.450%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
  <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/mouseLemur/MicMur1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABDC00 Microcebus<BR>murinus]</TD><TD>Mouse&nbsp;lemur</TD>
  <TD>Jun.&nbsp;2003&nbsp;(Broad/micMur1)</TD>
  <TD>Broad Institute micMur1 (NCBI project 19967, ABDC00000000)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-13</TD><TD ALIGN=RIGHT>26.636%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel&nbsp;monkey</TD>
  <TD>Oct.&nbsp;2011&nbsp;(SaiBol1.0/saiBol1)</TD>
  <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD>
  <TD ALIGN=RIGHT>2012-01-07</TD>
  <TD ALIGN=RIGHT>2012-01-09</TD>
  <TD>2012-03-09</TD><TD ALIGN=RIGHT>32.339%</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Sep.&nbsp;2007&nbsp;(Broad/equCab2)</TD>
   <TD>Broad Institute EquCab2</TD>
   <TD>Broad Institute EquCab2</TD>
Line 151: Line 179:
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.415%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>34.415%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
  <TD>Feb.&nbsp;2008&nbsp;(Broad/cavPor3)</TD>
  <TD>Broad Institute cavPor3</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD ALIGN=RIGHT>2009-08-15</TD>
  <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.447%</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/alpaca/VicPac1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRR01 Vicugna<BR>pacos]</TD><TD>Alpaca</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/vicPac1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/vicPac1)</TD>
   <TD>Broad Institute vicPac1</TD>
   <TD>Broad Institute vicPac1</TD>
Line 165: Line 186:
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TD>Feb.&nbsp;2008&nbsp;(Broad/turTru1)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Ttru_1.4/turTru2)</TD>
   <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
   <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.761%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>30.267%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TD>Dec.&nbsp;2006&nbsp;(Broad/tupBel1)</TD>
   <TD>Aug.&nbsp;2011&nbsp;(SGSC&nbsp;Sscrofa10.2/susScr3)</TD>
   <TD>Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)</TD>
   <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>19.766%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.685%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/84 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TD>Nov.&nbsp;2009&nbsp;(SGSC&nbsp;Sscrofa9.2/susScr2)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Btau_4.6.1/bosTau7)</TD>
   <TD>SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2)</TD>
   <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
   <TD ALIGN=RIGHT>2010-03-25</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>23.248%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>26.255%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/83 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Ovis<BR>aries]</TD><TD>Sheep</TD>
   <TD>Apr.&nbsp;2009&nbsp;(Broad/oryCun2)</TD>
   <TD>Feb.&nbsp;2010&nbsp;(ISGC&nbsp;Ovis_aries_1.0/oviAri1)</TD>
   <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD>
   <TD>ISGC (NCBI project 10709, accession GCA_000005525.1)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2010-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>25.248%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>15.341%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Choloepus<BR>hoffmanni]</TD><TD>Sloth</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
  <TD>Jul.&nbsp;2008&nbsp;(Broad/choHof1)</TD>
  <TD>Broad Institute choHof1</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
  <TD>Oct.&nbsp;2011&nbsp;(BROAD&nbsp;v1.0/triMan1)</TD>
  <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/pteVam1)</TD>
   <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
   <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD>
Line 214: Line 221:
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>27.345%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>27.345%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Felis<BR>catus]</TD><TD>Cat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/614 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
   <TD>Dec.&nbsp;2008&nbsp;(NHGRI/GTB&nbsp;V17e/felCat4)</TD>
   <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
   <TD>NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)</TD>
   <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
   <TD ALIGN=RIGHT>2010-05-26</TD>
   <TD ALIGN=RIGHT>2010-11-03</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>24.033%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
   <TD>Sep.&nbsp;2011&nbsp;(ICGSC&nbsp;Felis_catus&nbsp;6.2/felCat5)</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
   <TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD>
   <TD ALIGN=RIGHT>2010-02-03</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>30.979%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>29.725%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
   <TD>Sep.&nbsp;2011&nbsp;(Broad&nbsp;CanFam3.1/canFam3)</TD>
   <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
   <TD>Broad CanFam3.1 (GCA_000002285.2)</TD>
Line 235: Line 242:
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>29.144%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>29.144%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Dec.&nbsp;2009&nbsp;(BGI-Shenzhen&nbsp;1.0/ailMel1)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2010-02-03</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>25.823%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>30.979%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/227 Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dasNov2)</TD>
   <TD>June&nbsp;2006&nbsp;(Broad/eriEur1)</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.856%</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>17.004%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/614 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/91 Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TD>Jul.&nbsp;2010&nbsp;(Broad&nbsp;Institute&nbsp;Myoluc2.0/myoLuc2)</TD>
   <TD>June&nbsp;2006&nbsp;(Broad/sorAra1)</TD>
   <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
   <TD ALIGN=RIGHT>2010-11-03</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.382%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TH>[http://genome.wustl.edu/genomes/view/choloepus_hoffmanni/ 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Choloepus<BR>hoffmanni]</TD><TD>Sloth</TD>
  <TD>Oct.&nbsp;2011&nbsp;(Btau_4.6.1/bosTau7)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/choHof1)</TD>
  <TD>Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)</TD>
   <TD>Broad Institute choHof1</TD>
  <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>2012-01-06</TD>
  <TD>2012-03-22</TD><TD ALIGN=RIGHT>26.255%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/83 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACIV00 Ovis<BR>aries]</TD><TD>Sheep</TD>
   <TD>Feb.&nbsp;2010&nbsp;(ISGC&nbsp;Ovis_aries_1.0/oviAri1)</TD>
   <TD>ISGC (NCBI project 10709, accession GCA_000005525.1)</TD>
   <TD ALIGN=RIGHT>2010-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>15.341%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/771 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/74593 Ochotona<BR>princeps]</TD><TD>Pika</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/ochPri2)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(Armadillo/dasNov3)</TD>
   <TD>Broad Institute ochPri2</TD>
   <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>14.542%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.201%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
Line 284: Line 284:
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>15.147%</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>15.147%</TD>
</TR><TR>
</TR><TR>
  <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/hedgehog/eriEur1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/227 Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
  <TD>June&nbsp;2006&nbsp;(Broad/eriEur1)</TD>
  <TD>Broad Institute eriEur1 (Draft_v1, NCBI project 12575)</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD ALIGN=RIGHT>2009-09-02</TD>
  <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.856%</TD>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/tenrec/echTel1/ 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAIY00 Echinops<BR>telfairi]</TD><TD>Tenrec</TD>
   <TD>July&nbsp;2005&nbsp;(Broad/echTel1)</TD>
   <TD>July&nbsp;2005&nbsp;(Broad/echTel1)</TD>
   <TD>Broad July 2005</TD>
   <TD>Broad July 2005</TD>
Line 298: Line 291:
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>10.947%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>10.947%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/commonShrew/sorAra1/ 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/91 Sorex<BR>araneus]</TD><TD>Shrew</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD>
   <TD>June&nbsp;2006&nbsp;(Broad/sorAra1)</TD>
  <TD>Oct.&nbsp;2011&nbsp;(BROAD&nbsp;v1.0/triMan1)</TD>
   <TD>Broad Institute sorAra1 (Draft_v2)</TD>
  <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>26.546%</TD>
</TR><TR>
  <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD>
   <TD>Jul.&nbsp;2009&nbsp;(Broad/loxAfr3)</TD>
   <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>9.382%</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>25.823%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/233 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD>
Line 312: Line 312:
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>4.353%</TD>
   <TD>2012-03-24</TD><TD ALIGN=RIGHT>4.353%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.broadinstitute.org/mammals/opossum 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
  <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
  <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD ALIGN=RIGHT>2009-08-14</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian&nbsp;devil</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Feb.&nbsp;2011&nbsp;(WTSI&nbsp;Devil_ref&nbsp;v7.0/sarHar1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
   <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD>
   <TD ALIGN=RIGHT>2012-02-02</TD>
   <TD ALIGN=RIGHT>2012-02-02</TD>
   <TD ALIGN=RIGHT>2012-02-08</TD>
   <TD ALIGN=RIGHT>2012-02-08</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>8.479%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
   <TH>[http://www.broadinstitute.org/mammals/opossum 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
   <TD>Oct.&nbsp;2006&nbsp;(Broad/monDom5)</TD>
   <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
   <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2012-03-28</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>9.584%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/110 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>Mar.&nbsp;2007&nbsp;(WUGSC&nbsp;5.0.1/ornAna1)</TD>
   <TD>WUSTL version 5.0.1</TD>
   <TD>WUSTL version 5.0.1</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>5.348%</TD>
</TR><TR>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/111 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
  <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
  <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
  <TD ALIGN=RIGHT>2012-03-29</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/111 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD>
   <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
   <TD>Nov.&nbsp;2011&nbsp;(ICGSC&nbsp;Gallus_gallus-4.0/galGal4)</TD>
   <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
   <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.676%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/367 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/367 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQF00 Taeniopygia<BR>guttata]</TD><TD>Zebra&nbsp;finch</TD>
   <TD>Jul.&nbsp;2008&nbsp;(WUGSC&nbsp;3.2.4/taeGut1)</TD>
   <TD>Jul.&nbsp;2008&nbsp;(WUGSC&nbsp;3.2.4/taeGut1)</TD>
   <TD>Washington University taeGut1</TD>
   <TD>Washington University taeGut1</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.599%</TD>
</TR><TR>
  <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
  <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
  <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
  <TD ALIGN=RIGHT>2010-11-04</TD>
  <TD ALIGN=RIGHT>N/A</TD>
  <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.511%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD>
  <TD>Sep.&nbsp;2011&nbsp;(WUSTL&nbsp;v6.3/melUnd1)</TD>
  <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD>
  <TD ALIGN=RIGHT>2012-03-27</TD>
  <TD ALIGN=RIGHT>2012-03-28</TD>
  <TD>2012-03-30</TD><TD ALIGN=RIGHT>3.589%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD>
Line 366: Line 366:
   <TD ALIGN=RIGHT>2011-04-12</TD>
   <TD ALIGN=RIGHT>2011-04-12</TD>
   <TD ALIGN=RIGHT>2011-04-13</TD>
   <TD ALIGN=RIGHT>2011-04-13</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.331%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/12107 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY01 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted&nbsp;turtle</TD>
   <TD>Dec.&nbsp;2009&nbsp;(TGC&nbsp;Turkey_2.01/melGal1)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(v3.0.1/chrPic1)</TD>
   <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD>
   <TD>International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)</TD>
   <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>2012-03-27</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-03-29</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-03-30</TD><TD ALIGN=RIGHT>4.731%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/v4.2/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAMC01 Xenopus<BR>tropicalis]</TD><TD>X.&nbsp;tropicalis</TD>
Line 380: Line 380:
   <TD ALIGN=RIGHT>2011-09-08</TD>
   <TD ALIGN=RIGHT>2011-09-08</TD>
   <TD ALIGN=RIGHT>2011-09-08</TD>
   <TD ALIGN=RIGHT>2011-09-08</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>3.125%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD>
Line 387: Line 387:
   <TD ALIGN=RIGHT>2012-01-11</TD>
   <TD ALIGN=RIGHT>2012-01-11</TD>
   <TD ALIGN=RIGHT>2012-01-12</TD>
   <TD ALIGN=RIGHT>2012-01-12</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.715%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic&nbsp;cod</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2661 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic&nbsp;cod</TD>
Line 394: Line 394:
   <TD ALIGN=RIGHT>2011-12-29</TD>
   <TD ALIGN=RIGHT>2011-12-29</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD ALIGN=RIGHT>2012-01-04</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.726%</TD>
</TR><TR>
</TR><TR>
  <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
  <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil1)</TD>
  <TD>Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1)</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD ALIGN=RIGHT>2011-11-30</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD>
   <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
   <TD>Feb.&nbsp;2006&nbsp;(Broad/gasAcu1)</TD>
   <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
   <TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.016%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.fugu-sg.org/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TH>[http://www.fugu-sg.org/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(FUGU5/fr3)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
   <TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
   <TD ALIGN=RIGHT>2011-11-17</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD>
</TR><TR>
  <TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
  <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil2)</TD>
  <TD>Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1)</TD>
  <TD ALIGN=RIGHT>2012-04-10</TD>
  <TD ALIGN=RIGHT>2012-04-11</TD>
  <TD>2012-04-11</TD><TD ALIGN=RIGHT>1.957%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
Line 422: Line 422:
   <TD ALIGN=RIGHT>2010-06-07</TD>
   <TD ALIGN=RIGHT>2010-06-07</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-02</TD><TD ALIGN=RIGHT>1.735%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD>
Line 429: Line 429:
   <TD ALIGN=RIGHT>2010-12-03</TD>
   <TD ALIGN=RIGHT>2010-12-03</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>2.602%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD>
   <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD>
Line 436: Line 436:
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.936%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/287 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD>
   <TH>[ftp://genome.wustl.edu/pub/organism/Other_Vertebrates/Petromyzon_marinus/assembly/Petromyzon_marinus-3.0/ 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/287 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD>
Line 443: Line 443:
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD ALIGN=RIGHT>2009-08-14</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2012-04-04</TD><TD ALIGN=RIGHT>1.101%</TD>
</TR>
</TR>
</TABLE>
</TABLE>

Latest revision as of 16:53, 8 August 2012

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date source
version
Repeat
Masker
Window
Masker
chain
on mm10
% of mm10
matched
(chainLink table)
01mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 N/AN/A
02rn5Rattus
norvegicus
Rat Mar. 2012 (RGSC 5.0/rn5) RGSC Rnor_5.0 (GCA_000001895.3) 2012-03-21 2012-03-21 2012-03-2667.353%
03speTri2Spermophilus
tridecemlineatus
Squirrel Nov. 2011 (Broad SpeTri2/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2012-03-1634.217%
04dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 (Broad/dipOrd1) Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2009-09-02 N/A 2012-03-1619.460%
05hetGla2Heterocephalus
glaber
Naked mole rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 2012-04-1432.753%
06cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2012-03-1728.447%
07oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 N/A 2012-03-1725.248%
08ochPri2Ochotona
princeps
Pika Jul. 2008 (Broad/ochPri2) Broad Institute ochPri2 2009-09-02 N/A 2012-03-2414.542%
09tupBel1Tupaia
belangeri
Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 N/A 2012-03-1719.766%
10hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A 2012-03-0838.226%
11gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 N/A 2012-03-0833.987%
12panTro4Pan
troglodytes
Chimp Feb. 2011 (Pan_troglodytes-2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2012-03-1034.674%
13nomLeu2Nomascus
leucogenys
Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01) 2012-04-14 2012-04-14 2012-04-1434.031%
14ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A 2012-03-0934.496%
15tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 (Broad/tarSyr1) Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2009-09-02 N/A 2012-03-1224.560%
16rheMac3Macaca
mulatta
Chinese rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2012-03-0933.931%
17papHam1Papio
hamadryas
Baboon Nov. 2008 (Baylor 1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 N/A 2012-03-1033.577%
18otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad OtoGar3/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2012-03-1329.795%
19calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/A 2012-03-0932.450%
20micMur1Microcebus
murinus
Mouse lemur Jun. 2003 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 N/A 2012-03-1326.636%
21saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (SaiBol1.0/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2012-03-0932.339%
22equCab2Equus
caballus
Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 N/A 2012-03-1634.415%
23vicPac1Vicugna
pacos
Alpaca Jul. 2008 (Broad/vicPac1) Broad Institute vicPac1 2009-09-02 N/A 2012-03-1722.636%
24turTru2Tursiops
truncatus
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2012-04-1430.267%
25susScr3Sus
scrofa
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 2012-04-1425.685%
26bosTau7Bos
taurus
Cow Oct. 2011 (Btau_4.6.1/bosTau7) Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 2012-01-04 2012-01-06 2012-03-2226.255%
27oviAri1Ovis
aries
Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) ISGC (NCBI project 10709, accession GCA_000005525.1) 2010-04-14 N/A 2012-03-2215.341%
28pteVam1Pteropus
vampyrus
Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 N/A 2012-03-2027.345%
29myoLuc2Myotis
lucifugus
Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 N/A 2012-03-2224.363%
30felCat5Felis
catus
Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) 2012-04-12 2012-04-13 2012-04-1429.725%
31canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2012-03-2029.144%
32ailMel1Ailuropoda
melanoleuca
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 N/A 2012-03-2030.979%
33eriEur1Erinaceus
europaeus
Hedgehog June 2006 (Broad/eriEur1) Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2009-09-02 2009-09-02 2012-03-249.856%
34sorAra1Sorex
araneus
Shrew June 2006 (Broad/sorAra1) Broad Institute sorAra1 (Draft_v2) 2009-09-02 2009-09-02 2012-03-249.382%
35choHof1Choloepus
hoffmanni
Sloth Jul. 2008 (Broad/choHof1) Broad Institute choHof1 2009-09-02 N/A 2012-03-2218.019%
36dasNov3Dasypus
novemcinctus
Armadillo Dec. 2011 (Armadillo/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2012-04-1425.201%
37proCap1Procavia
capensis
Rock hyrax Jul. 2008 (Broad/proCap1) Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2009-09-02 N/A 2012-03-2315.147%
38echTel1Echinops
telfairi
Tenrec July 2005 (Broad/echTel1) Broad July 2005 2009-09-02 N/A 2012-03-2410.947%
39triMan1Trichechus
manatus
latirostris
Manatee Oct. 2011 (BROAD v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2012-03-3026.546%
40loxAfr3Loxodonta
africana
Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 N/A 2012-03-2025.823%
41macEug2Macropus
eugenii
Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2012-03-244.353%
42sarHar1Sarcophilus
harrisii
Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2012-03-308.479%
43monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2012-03-309.584%
44ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 N/A 2012-03-305.348%
45galGal4Gallus
gallus
Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2012-04-033.676%
46taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) Washington University taeGut1 2009-08-14 2009-08-14 2012-04-033.599%
47melGal1Meleagris
gallopavo
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 N/A 2012-04-033.511%
48melUnd1Melopsittacus
undulatus
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2012-03-303.589%
49anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2012-04-033.331%
50chrPic1Chrysemys
picta
bellii
Painted turtle Dec. 2011 (v3.0.1/chrPic1) International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 2012-03-27 2012-03-29 2012-03-304.731%
51xenTro3Xenopus
tropicalis
X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) 2011-09-08 2011-09-08 2012-04-033.125%
52latCha1Latimeria
chalumnae
Coelacanth Aug. 2011 (LatCha1/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2012-04-032.715%
53gadMor1Gadus
morhua
Atlantic cod May. 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 2012-04-031.726%
54gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2012-04-032.016%
55fr3Takifugu
rubripes
Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2012-04-031.789%
56oreNil2Oreochromis
niloticus
Nile tilapia Jan. 2011 (Nile tilapia/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 2012-04-111.957%
57tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2012-04-021.735%
58danRer7Danio
rerio
Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 N/A 2012-04-032.602%
59oryLat2Oryzias
latipes
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2012-04-031.936%
60petMar1Petromyzon
marinus
Lamprey Mar. 2007 (WUGSC 3.0/petMar1) WUSTL v.3.0 (March 2007) N/A 2009-08-14 2012-04-041.101%