Mm10 conservation alignment: Difference between revisions

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(fix assembly reference for mm10 to correct assembly)
 
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   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/165668/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(GRCm38/mm10)</TD>
   <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
   <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD>
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   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4]</TH><TD>[http://www.hgsc.bcm.tmc.edu/project-species-m-Rat.hgsc?pageLocation=Rat Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16219 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn5 rn5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR06 Rattus<BR>norvegicus]</TD><TD>Rat</TD>
   <TD>Nov.&nbsp;2004&nbsp;(Baylor&nbsp;3.4/rn4)</TD>
   <TD>Mar.&nbsp;2012&nbsp;(RGSC&nbsp;5.0/rn5)</TD>
   <TD>Baylor HGSC v. 3.4</TD>
   <TD>RGSC Rnor_5.0 (GCA_000001895.3)</TD>
   <TD ALIGN=RIGHT>2009-08-15</TD>
   <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-03-21</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>54.645%</TD>
   <TD>2012-03-26</TD><TD ALIGN=RIGHT>67.353%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD>
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   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>19.460%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/68323 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFSB00 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole-rat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked&nbsp;mole&nbsp;rat</TD>
   <TD>Jul.&nbsp;2011&nbsp;(HetGla_1.0/hetGla1)</TD>
   <TD>Jan.&nbsp;2012&nbsp;(Broad&nbsp;HetGla_female_1.0/hetGla2)</TD>
   <TD>HetGla_1.0 (NCBI project 68323, accession GCA_000230455.1)</TD>
   <TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD>
   <TD ALIGN=RIGHT>2011-12-03</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>2011-12-06</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD>2012-03-16</TD><TD ALIGN=RIGHT>32.163%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>32.753%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea&nbsp;pig</TD>
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   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
   <TD>2012-03-10</TD><TD ALIGN=RIGHT>34.674%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu1.0/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV00 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13975 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01 Nomascus<BR>leucogenys]</TD><TD>Gibbon</TD>
   <TD>Jan.&nbsp;2010&nbsp;(GGSC&nbsp;Nleu1.0/nomLeu1)</TD>
   <TD>Jun.&nbsp;2011&nbsp;(GGSC&nbsp;Nleu1.1/nomLeu2)</TD>
   <TD>GGSC (NCBI project 13975, accession GCA_000146795.1)</TD>
   <TD>Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01)</TD>
   <TD ALIGN=RIGHT>2011-11-16</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD>2012-03-08</TD><TD ALIGN=RIGHT>34.132%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>34.031%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
   <TH>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Pongo<BR>pygmaeus<BR>abelii]</TD><TD>Orangutan</TD>
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   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>22.636%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/bottlenosedDolphin/Turtru1.0/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN00 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD>
   <TD>Feb.&nbsp;2008&nbsp;(Broad/turTru1)</TD>
   <TD>Oct.&nbsp;2011&nbsp;(Baylor&nbsp;Ttru_1.4/turTru2)</TD>
   <TD>Broad Institute turTru1 (NCBI project 20367, ABRN01000000)</TD>
   <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-14</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>28.761%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>30.267%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/84 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr2 susScr2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK00 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD>
   <TD>Nov.&nbsp;2009&nbsp;(SGSC&nbsp;Sscrofa9.2/susScr2)</TD>
   <TD>Aug.&nbsp;2011&nbsp;(SGSC&nbsp;Sscrofa10.2/susScr3)</TD>
   <TD>SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2)</TD>
   <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD>
   <TD ALIGN=RIGHT>2010-03-25</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-17</TD><TD ALIGN=RIGHT>23.248%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.685%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/82 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFC00 Bos<BR>taurus]</TD><TD>Cow</TD>
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   <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>24.363%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Felis_catus/catChr4/ 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACBE00 Felis<BR>catus]</TD><TD>Cat</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/16726 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANG02 Felis<BR>catus]</TD><TD>Cat</TD>
   <TD>Dec.&nbsp;2008&nbsp;(NHGRI/GTB&nbsp;V17e/felCat4)</TD>
   <TD>Sep.&nbsp;2011&nbsp;(ICGSC&nbsp;Felis_catus&nbsp;6.2/felCat5)</TD>
   <TD>NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)</TD>
   <TD>International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)</TD>
   <TD ALIGN=RIGHT>2010-05-26</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-20</TD><TD ALIGN=RIGHT>24.033%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>29.725%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/85 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD>
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   <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD>
   <TD>2012-03-22</TD><TD ALIGN=RIGHT>18.019%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/armadillo/dasNov2/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV00 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD>
   <TD>Jul.&nbsp;2008&nbsp;(Broad/dasNov2)</TD>
   <TD>Dec.&nbsp;2011&nbsp;(Armadillo/dasNov3)</TD>
   <TD>Broad Institute dasNov2 (NCBI project 12594, AAGV020000000)</TD>
   <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD>
   <TD ALIGN=RIGHT>2009-09-02</TD>
   <TD ALIGN=RIGHT>2012-04-12</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>2012-04-13</TD>
   <TD>2012-03-23</TD><TD ALIGN=RIGHT>17.004%</TD>
   <TD>2012-04-14</TD><TD ALIGN=RIGHT>25.201%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/genome/2488 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRQ00 Procavia<BR>capensis]</TD><TD>Rock&nbsp;hyrax</TD>
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   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.789%</TD>
</TR><TR>
</TR><TR>
   <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile&nbsp;tilapia</TD>
   <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil1)</TD>
   <TD>Jan.&nbsp;2011&nbsp;(Nile&nbsp;tilapia/oreNil2)</TD>
   <TD>Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1)</TD>
   <TD>Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1)</TD>
   <TD ALIGN=RIGHT>2011-11-30</TD>
   <TD ALIGN=RIGHT>2012-04-10</TD>
   <TD ALIGN=RIGHT>2011-11-30</TD>
   <TD ALIGN=RIGHT>2012-04-11</TD>
   <TD>2012-04-03</TD><TD ALIGN=RIGHT>1.957%</TD>
   <TD>2012-04-11</TD><TD ALIGN=RIGHT>1.957%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>
   <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD>

Latest revision as of 16:53, 8 August 2012

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence		 UCSC db name/
genome-preview
browser		 Scientific name/
assembly information		 Common
name		 assembly date source
version		 Repeat
Masker		 Window
Masker		 chain
on mm10		 % of mm10
matched
(chainLink table)
01mm10Mus
musculus		Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 N/AN/A
02rn5Rattus
norvegicus		Rat Mar. 2012 (RGSC 5.0/rn5) RGSC Rnor_5.0 (GCA_000001895.3) 2012-03-21 2012-03-21 2012-03-2667.353%
03speTri2Spermophilus
tridecemlineatus		Squirrel Nov. 2011 (Broad SpeTri2/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2012-03-1634.217%
04dipOrd1Dipodomys
ordii		Kangaroo rat Jul. 2008 (Broad/dipOrd1) Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2009-09-02 N/A 2012-03-1619.460%
05hetGla2Heterocephalus
glaber		Naked mole rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 2012-04-1432.753%
06cavPor3Cavia
porcellus		Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2012-03-1728.447%
07oryCun2Oryctolagus
cuniculus		Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 N/A 2012-03-1725.248%
08ochPri2Ochotona
princeps		Pika Jul. 2008 (Broad/ochPri2) Broad Institute ochPri2 2009-09-02 N/A 2012-03-2414.542%
09tupBel1Tupaia
belangeri		Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 N/A 2012-03-1719.766%
10hg19Homo
sapiens		Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A 2012-03-0838.226%
11gorGor3Gorilla
gorilla
gorilla		Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 N/A 2012-03-0833.987%
12panTro4Pan
troglodytes		Chimp Feb. 2011 (Pan_troglodytes-2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2012-03-1034.674%
13nomLeu2Nomascus
leucogenys		Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01) 2012-04-14 2012-04-14 2012-04-1434.031%
14ponAbe2Pongo
pygmaeus
abelii		Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A 2012-03-0934.496%
15tarSyr1Tarsius
syrichta		Tarsier Aug. 2008 (Broad/tarSyr1) Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2009-09-02 N/A 2012-03-1224.560%
16rheMac3Macaca
mulatta		Chinese rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2012-03-0933.931%
17papHam1Papio
hamadryas		Baboon Nov. 2008 (Baylor 1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 N/A 2012-03-1033.577%
18otoGar3Otolemur
garnettii		Bushbaby Mar. 2011 (Broad OtoGar3/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2012-03-1329.795%
19calJac3Callithrix
jacchus		Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/A 2012-03-0932.450%
20micMur1Microcebus
murinus		Mouse lemur Jun. 2003 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 N/A 2012-03-1326.636%
21saiBol1Saimiri
boliviensis		Squirrel monkey Oct. 2011 (SaiBol1.0/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2012-03-0932.339%
22equCab2Equus
caballus		Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 N/A 2012-03-1634.415%
23vicPac1Vicugna
pacos		Alpaca Jul. 2008 (Broad/vicPac1) Broad Institute vicPac1 2009-09-02 N/A 2012-03-1722.636%
24turTru2Tursiops
truncatus		Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2012-04-1430.267%
25susScr3Sus
scrofa		Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 2012-04-1425.685%
26bosTau7Bos
taurus		Cow Oct. 2011 (Btau_4.6.1/bosTau7) Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 2012-01-04 2012-01-06 2012-03-2226.255%
27oviAri1Ovis
aries		Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) ISGC (NCBI project 10709, accession GCA_000005525.1) 2010-04-14 N/A 2012-03-2215.341%
28pteVam1Pteropus
vampyrus		Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 N/A 2012-03-2027.345%
29myoLuc2Myotis
lucifugus		Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 N/A 2012-03-2224.363%
30felCat5Felis
catus		Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) 2012-04-12 2012-04-13 2012-04-1429.725%
31canFam3Canis
lupus
familiaris		Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2012-03-2029.144%
32ailMel1Ailuropoda
melanoleuca		Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 N/A 2012-03-2030.979%
33eriEur1Erinaceus
europaeus		Hedgehog June 2006 (Broad/eriEur1) Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2009-09-02 2009-09-02 2012-03-249.856%
34sorAra1Sorex
araneus		Shrew June 2006 (Broad/sorAra1) Broad Institute sorAra1 (Draft_v2) 2009-09-02 2009-09-02 2012-03-249.382%
35choHof1Choloepus
hoffmanni		Sloth Jul. 2008 (Broad/choHof1) Broad Institute choHof1 2009-09-02 N/A 2012-03-2218.019%
36dasNov3Dasypus
novemcinctus		Armadillo Dec. 2011 (Armadillo/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2012-04-1425.201%
37proCap1Procavia
capensis		Rock hyrax Jul. 2008 (Broad/proCap1) Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2009-09-02 N/A 2012-03-2315.147%
38echTel1Echinops
telfairi		Tenrec July 2005 (Broad/echTel1) Broad July 2005 2009-09-02 N/A 2012-03-2410.947%
39triMan1Trichechus
manatus
latirostris		Manatee Oct. 2011 (BROAD v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2012-03-3026.546%
40loxAfr3Loxodonta
africana		Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 N/A 2012-03-2025.823%
41macEug2Macropus
eugenii		Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2012-03-244.353%
42sarHar1Sarcophilus
harrisii		Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2012-03-308.479%
43monDom5Monodelphis
domestica		Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2012-03-309.584%
44ornAna1Ornithorhynchus
anatinus		Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 N/A 2012-03-305.348%
45galGal4Gallus
gallus		Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2012-04-033.676%
46taeGut1Taeniopygia
guttata		Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) Washington University taeGut1 2009-08-14 2009-08-14 2012-04-033.599%
47melGal1Meleagris
gallopavo		Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 N/A 2012-04-033.511%
48melUnd1Melopsittacus
undulatus		Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2012-03-303.589%
49anoCar2Anolis
carolinensis		Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2012-04-033.331%
50chrPic1Chrysemys
picta
bellii		Painted turtle Dec. 2011 (v3.0.1/chrPic1) International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 2012-03-27 2012-03-29 2012-03-304.731%
51xenTro3Xenopus
tropicalis		X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) 2011-09-08 2011-09-08 2012-04-033.125%
52latCha1Latimeria
chalumnae		Coelacanth Aug. 2011 (LatCha1/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2012-04-032.715%
53gadMor1Gadus
morhua		Atlantic cod May. 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 2012-04-031.726%
54gasAcu1Gasterosteus
aculeatus		Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2012-04-032.016%
55fr3Takifugu
rubripes		Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2012-04-031.789%
56oreNil2Oreochromis
niloticus		Nile tilapia Jan. 2011 (Nile tilapia/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 2012-04-111.957%
57tetNig2Tetraodon
nigroviridis		Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2012-04-021.735%
58danRer7Danio
rerio		Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 N/A 2012-04-032.602%
59oryLat2Oryzias
latipes		Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2012-04-031.936%
60petMar1Petromyzon
marinus		Lamprey Mar. 2007 (WUGSC 3.0/petMar1) WUSTL v.3.0 (March 2007) N/A 2009-08-14 2012-04-041.101%
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