Mm39 35-way conservation alignment

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see also

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on mm39
% of mm39
matched
(chainLink table)
01mm39Mus
musculus
Mouse Jun. 2020 (GRCm39/mm39) Genome Reference Consortium Mouse Build 39 (GCA_000001635.9) 2020-07-30 2020-07-28 N/AN/A
02rn6Rattus
norvegicus
Rat Jul. 2014 (RGSC 6.0/rn6) RGSC Rnor_6.0 (GCA_000001895.4) 2014-07-08 2014-07-09 2020-10-2070.901%
03GCF_003668045.3Cricetulus griseusChinese hamster 2020-06-11 (GCF_003668045.3 CriGri-PICRH-1.0) CHO Genome Community/GCF_003668045.3 2020-11-25 2020-11-26 2020-12-0858.000%
04casCan1Castor
canadensis
Beaver Feb. 2017 (C.can genome v1.0/casCan1) Hospital for Sick Children 2018-03-17 2018-03-17 2020-11-2436.600%
05speTri2Spermophilus
tridecemlineatus
Squirrel Nov. 2011 (Broad/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2020-11-2534.147%
06manPen1Manis
pentadactyla
Chinese pangolin Aug 2014 (M_pentadactyla-1.1.1/manPen1) Washington University (WashU) GCA_000738955.1 2014-08-15 2014-08-17 2020-11-2427.322%
07cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2020-11-2528.378%
08galVar1Galeopterus
variegatus
Malayan flying lemur Jun. 2014 (G_variegatus-3.0.2/galVar1) Washington University (WashU) 2016-03-02 2016-03-04 2020-11-2435.714%
09calJac4Callithrix
jacchus
Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4) McDonnell Genome Institute at Washington University 2020-09-02 2020-09-02 2020-09-0433.090%
10gorGor6Gorilla
gorilla
gorilla
Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) University of Washington 2019-11-19 2019-11-19 2020-11-2435.064%
11hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) 2014-01-10 2013-12-25 2020-08-1835.372%
12panPan3Pan
paniscus
Bonobo May 2020 (Mhudiblu_PPA_v0/panPan3) University of Washington 2020-06-12 2020-06-12 2020-11-2435.282%
13panTro6Pan
troglodytes
Chimp Jan. 2018 (Clint_PTRv2/panTro6) University of Washington 2018-03-24 2018-03-24 2020-11-2435.291%
14tarSyr2Tarsius
syrichta
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 2020-11-2332.278%
15rheMac10Macaca
mulatta
Rhesus Feb. 2019 (Mmul_10/rheMac10) The Genome Institute at Washington University School of Medicine 2019-07-01 2019-07-01 2020-10-2034.838%
16otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2020-11-2429.729%
17equCab3Equus
caballus
Horse Jan. 2018 (EquCab3.0/equCab3) University of Louisville 2018-05-24 2018-05-23 2020-11-2434.831%
18turTru2Tursiops
truncatus
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2020-11-2430.188%
19canFam4Canis
lupus
familiaris
Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) Uppsala University 2020-03-31 2020-03-31 2020-11-2429.376%
20tupBel1Tupaia
belangeri
Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 2012-05-03 2020-11-2519.691%
21susScr3Sus
scrofa
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 2020-11-2425.611%
22loxAfr3Loxodonta
africana
Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 2013-06-21 2020-11-2425.756%
23oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 2020-11-2425.182%
24oviAri4Ovis
aries
Sheep Nov. 2015 (Oar_v4.0/oviAri4) International Sheep Genome Consortium 2018-04-18 2018-04-23 2020-11-2426.200%
25neoSch1Neomonachus
schauinslandi
Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) Johns Hopkins University 2017-09-22 2017-09-22 2020-11-2431.257%
26bosTau9Bos
taurus
Cow Apr. 2018 (ARS-UCD1.2/bosTau9) USDA ARS 2018-11-07 2018-11-07 2020-11-2326.588%
27ochPri3Ochotona
princeps
Pika May 2012 (OchPri3.0/ochPri3) Broad Institute 2013-06-20 2013-06-18 2020-11-2518.559%
28eriEur2Erinaceus
europaeus
Hedgehog May 2012 (EriEur2.0/eriEur2) Broad Institute EriEur2.0 2013-06-12 2013-06-07 2020-11-2413.450%
29echTel2Echinops
telfairi
Tenrec Nov. 2012 (Broad/echTel2) Broad/EchTel2.0 2013-05-30 2013-05-30 2020-11-2514.456%
30sorAra2Sorex
araneus
Shrew Aug. 2008 (Broad/sorAra2) Broad Institute SorAra2.0 2013-05-29 2013-05-29 2020-11-2513.370%
31monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2020-11-255.382%
32xenTro9Xenopus
tropicalis
X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) DOE Joint Genome Institute 2017-03-27 2017-03-27 2020-11-251.936%
33galGal6Gallus
gallus
Chicken Mar. 2018 (GRCg6a/galGal6) Genome Reference Consortium 2018-10-11 2018-10-11 2020-11-252.537%
34petMar3Petromyzon
marinus
Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) University of Kentucky 2018-01-12 2018-01-12 2020-11-240.905%
35danRer11Danio
rerio
Zebrafish May 2017 (GRCz11/danRer11) Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4) 2017-06-06 2017-06-02 2020-11-251.416%