OrnAna1 Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external links from the UCSC database name go to the sequencing center information pages for this genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
  • % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
  • % of ornAna1 matched (chainLink table) == featureBits ornAna1 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order
count
ucsc
db name
chrom
count
total
size
non-N
bases
N base
count
% masked common name coverage N50
chrom.sizes
alignment type % of ornAna1
matched
(chainLink table)
chain
minScore
chain
linearGap
01ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 N/AN/A 1000 N/A
02monDom4 10 3,605,614,6493,501,643,220 103,971,429% 55.69 Opossum6.5X 526135210 Net17.177% 5000 loose
03hg18 49 3,107,677,2732,881,421,696 226,255,577% 48.85 Human20X 146274826 Net12.966% 1000 loose
04mm8 34 2,664,455,0882,567,283,688 97,171,400% 42.43 Mouse20X 132085098 Net8.236% 1000 loose
05galGal3 57 1,100,480,4411,042,583,135 57,897,306% 9.85 Chicken6.6X 94230402 Net6.431% 1000 loose
06anoCar1 7,233 1,781,602,8991,741,478,929 40,123,970% 42.56 Lizard6.8X 2439125 Net5.044% 1000 loose