Other genome browsers: Difference between revisions

From genomewiki
Jump to navigationJump to search
Line 23: Line 23:
* [http://www.genomequebec.mcgill.ca/compgen/browser-VPR/cgi-bin/hgGateway Ververt monkey] at McGill
* [http://www.genomequebec.mcgill.ca/compgen/browser-VPR/cgi-bin/hgGateway Ververt monkey] at McGill


* [http://genome.ccbr.utoronto.ca/ Cannabis sativa]  at U Toronto
* [http://genome.ccbr.utoronto.ca/ <i>Cannabis sativa</i>]  at U Toronto


* [http://aedes.caltech.edu/cgi-bin/hgGateway Aedes aegypti] and two other mosquitoes at CalTech
* [http://aedes.caltech.edu/cgi-bin/hgGateway <i>Aedes aegypti</i>] and two other mosquitoes at CalTech


* Penn State has some [http://main.genome-browser.bx.psu.edu personal human genomes] not at UCSC
* Penn State has some [http://main.genome-browser.bx.psu.edu personal human genomes] not at UCSC


* [http://genome.smith.man.ac.uk Manchester, UK] has some local content on mouse, C. intestinalis and other orgs.  (seems to have been retired or moved)
* [http://genome.smith.man.ac.uk Manchester, UK] has some local content on mouse, <i>C. intestinalis</i> and other orgs.  (seems to have been retired or moved)


* [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly contained in the Track Data Hubs at UCSC.
* [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly also contained in the Track Data Hubs at UCSC.


* [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas] Genome Browser hosting D. melanogaster and some plants
* [http://shenlab.sols.unlv.edu/cgi-bin/hgGateway UNLV Las Vegas] Genome Browser hosting <i>D. melanogaster</i> and some plants (including rice, sorghum, <i>Arabidopsis</i>)


* [http://sticklebrowser.stanford.edu/ Sticklebrowser] at Stanford.
* [http://sticklebrowser.stanford.edu/ Sticklebrowser] at Stanford.


* [http://cbsugb.tc.cornell.edu/cgi-bin/hgGateway <i>Heliconius</i> Butterfly] at Cornell ([http://butterflygenome.org/node/2 butterflygenome.org]).
* [http://cbsugb.tc.cornell.edu/cgi-bin/hgGateway <i>Heliconius</i> butterfly] at Cornell ([http://butterflygenome.org/node/2 butterflygenome.org]).
 
* [http://gander.wustl.edu/cgi-bin/hgGateway?db=amaVit1 Puerto Rican parrot] at [http://gander.wustl.edu/ WashU] (+ alternate assemblies of <i>Drosophila</i> spp.).
 
* [http://128.227.123.35:8889/cgi-bin/hgGateway?hgsid=326&clade=other&org=Pleurobrachia+bachei&db=0 <i>Pleurobrachia bachei </i> ctenophore] from Whitney Laboratory for Marine Bioscience, St. Augustine, FL.
 
* [http://genomes.mcdb.ucla.edu/cgi-bin/hgGateway?hgsid=38871&clade=plant&org=Glycine+max&db=0 soybean] and others at UCLA.


== Browsers Using Non-UCSC Software==
== Browsers Using Non-UCSC Software==

Revision as of 22:28, 23 August 2014

Official UCSC Genome mirror site

This mirror is maintained by the Browser staff.


UCSC Genome mirror sites

These mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.

  • Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark


Locations using UCSC software on other organisms (or people) or additional content on our organisms

Note that not all of these sites are updating their software to the latest versions. To learn what version is being used, look at the v### number at the top of the hgTracks page ([host]/cgi-bin/hgTracks).

  • Manchester, UK has some local content on mouse, C. intestinalis and other orgs. (seems to have been retired or moved)
  • Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly also contained in the Track Data Hubs at UCSC.
  • UNLV Las Vegas Genome Browser hosting D. melanogaster and some plants (including rice, sorghum, Arabidopsis)

Browsers Using Non-UCSC Software

The UCSC Genome Browser is primarily funded to host vertebrate genomes. If you are looking for a genome browser that UCSC does not host, it may be available from another source. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.

Animal Browsers

  • NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
  • Vista Lawrence Berkeley Lab, CA
  • GARFIELD cat genome browser, Federick, MD
  • Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
  • NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program

Plant Browsers

  • EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
  • Arabidopsis arabidopsis.info Ensembl-based genome browser
  • Zea mays Maize Genome Sequencing Project

Fungi/Yeast Browsers

Other

  • JPGV Jena Prokaryotic Genome Browser

See Also

Related Wikis