Post-Release-Checklist: Difference between revisions

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(Post Release Checklist for Known Genes)
 
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* Add the link to the protein database /goldenPath/proteinDB/proteinsYYMMDD/database/ in:
* Add the link to the protein database /goldenPath/proteinDB/proteinsYYMMDD/database/ in:
:: downloads.html file
:: downloads.html file
:: Also, include the new assembly in this file: /goldenPath/proteinDB/proteinsYYMMDD/database/README.txt  
:: Also, include the new assembly in this file: /goldenPath/proteinDB/proteinsYYMMDD/database/README.txt (and edit it out of the previous file).





Revision as of 18:39, 28 August 2008

Post Release Checklist for Known Genes

This page capture the things to remember after the release of Known Genes for the new assembly.

  • Update the metadata in hgcentral:
set hgNearOk and hgPbOk = 1 in the dbDb table.
change defaultDb to the new assembly.
add a record in the gdbPdb table that points the assembly to the recent protein database.
  • Check to see if otherOrgs.ra file is updated for this assembly in:
kent/src/hg/hgGeneData/$org/$db/otherOrga.ra
  • For human, mouse and rat ask for a push of:
/usr/local.apache/htdocs/knownGeneList/$db/*
from hgwdev --> /usr/local/apache/htdocs/knownGeneList/
/usr/local/apache/htdocs/knownGeneLists.html (update this file to point to the new assembly)
from hgwdev --> /usr/local/apache/htdocs/
on all 8 RR machines and MGC
  • Add the link to the protein database /goldenPath/proteinDB/proteinsYYMMDD/database/ in:
downloads.html file
Also, include the new assembly in this file: /goldenPath/proteinDB/proteinsYYMMDD/database/README.txt (and edit it out of the previous file).