RefSeq primates browser status: Difference between revisions

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(adding dauMad1 eulMac1 eulFla1 genbank primates TBD)
 
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* [[RefSeq aves browser status]]
* [[RefSeq aves browser status]]
* [[RefSeq assemblies clade survey]]
* [[RefSeq assemblies clade survey]]
 
== refseq ==
== table ==
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
|+ RefSeq primate assemblies
|+ RefSeq primate assemblies
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Carlito+syrichta Carlito syrichta]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Carlito+syrichta Carlito syrichta]
| Tarsius syrichta
| Tarsius syrichta
| carSyr1 TBD
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2(2)]
| carSyr1 TBD
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2(2)]
| n/a
| [http://genome-test.cse.ucsc.edu/images/Carlito_syrichta.jpg Carlito_syrichta.jpg]
|-
|-
! 8
! 8
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Mandrillus+leucophaeus Mandrillus leucophaeus]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Mandrillus+leucophaeus Mandrillus leucophaeus]
| Drill
| Drill
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manLeu1 manLeu1(1)]
| manLeu1 TBD
| manLeu1 TBD
| manLeu1 TBD
| [http://genome-test.cse.ucsc.edu/images/Mandrillus_leucophaeus.jpg Mandrillus_leucophaeus.jpg]
| n/a
|-
|-
! 19
! 19
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Aotus+nancymaae Aotus nancymaae]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Aotus+nancymaae Aotus nancymaae]
| Nancy Ma's night monkey
| Nancy Ma's night monkey
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aotNan1 aotNan1(1)]
| aotNan1 TBD
| aotNan1 TBD
| aotNan1 TBD
| [http://genome-test.cse.ucsc.edu/images/Aotus_nancymaae.jpg Aotus_nancymaae.jpg]
| n/a
|-
|-
! 20
! 20
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Cercocebus+atys Cercocebus atys]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Cercocebus+atys Cercocebus atys]
| Sooty mangabey
| Sooty mangabey
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerAty1 cerAty1(1)]
| cerAty1 TBD
| cerAty1 TBD
| cerAty1 TBD
| [http://genome-test.cse.ucsc.edu/images/Cercocebus_atys.jpg Cercocebus_atys.jpg]
| n/a
|-
|-
! 21
! 21
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Macaca+nemestrina Macaca nemestrina]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Macaca+nemestrina Macaca nemestrina]
| Pigtail monkey
| Pigtail monkey
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1(1)]
| macNem1 TBD
| macNem1 TBD
| macNem1 TBD
| [http://genome-test.cse.ucsc.edu/images/Macaca_nemestrina.jpg Macaca_nemestrina.jpg]
| n/a
|-
|-
! 22
! 22
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Propithecus+coquereli Propithecus coquereli]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Propithecus+coquereli Propithecus coquereli]
| Coquerel's sifaka
| Coquerel's sifaka
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCoq1 proCoq1(1)]
| proCoq1 TBD
| proCoq1 TBD
| proCoq1 TBD
| [http://genome-test.cse.ucsc.edu/images/Propithecus_coquereli.jpg Propithecus_coquereli.jpg]
| n/a
|-
|-
! 23
! 23
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Cebus+capucinus+imitator Cebus capucinus imitator]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Cebus+capucinus+imitator Cebus capucinus imitator]
| White-faced sapajou
| White-faced sapajou
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cebCap1 cebCap1(1)]
| cebCap1 TBD
| cebCap1 TBD
| cebCap1 TBD
| [http://genome-test.cse.ucsc.edu/images/Cebus_capucinus_imitator.jpg Cebus_capucinus_imitator.jpg]
| n/a
|-
|-
! 24
! 24
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| [http://www.ncbi.nlm.nih.gov/genome/?term=Rhinopithecus+bieti Rhinopithecus bieti]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Rhinopithecus+bieti Rhinopithecus bieti]
| Black snub nosed monkey
| Black snub nosed monkey
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1(1)]
| rhiBie1 TBD
| rhiBie1 TBD
| rhiBie1 TBD
| [http://genome-test.soe.ucsc.edu/images/Rhinopithecus_bieti.jpg Rhinopithecus_bieti.jpg]
| n/a
|}
 
== genbank ==
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
|+ Additional genbank primate assemblies
! count
! taxId
! scientific name
! common name
! hgwdev latest
assembly(count)
! RR latest
assembly(count)
! photo file
|-
! 1
| [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=43780 43780]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Nasalis+larvatus Nasalis larvatus]
| Proboscis monkey
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1(1)]
| [http://genome.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1(1)]
| [http://genome-test.cse.ucsc.edu/images/Nasalis_larvatus.jpg Nasalis_larvatus.jpg]
|-
! 2
| [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=31869 31869]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Daubentonia+madagascariensis Daubentonia madagascariensis]
| Aye-aye
| dauMad1 TBD
| dauMad1 TBD
| Daubentonia_madagascariensis.jpg TBD
|-
! 3
| [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=30602 30602]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Eulemur+macaco Eulemur macaco]
| Black lemur
| eulMac1 TBD
| eulMac1 TBD
| Eulemur_macaco.jpg TBD
|-
! 4
| [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=87288 87288]
| [http://www.ncbi.nlm.nih.gov/genome/?term=Eulemur+flavifrons Eulemur flavifrons]
| Sclater's lemur
| eulFla1 TBD
| eulFla1 TBD
| Eulemur_flavifrons.jpg TBD
|}
|}
== phylo tree ==
[[File:GenbankPrimates.jpg|Genbank phylogenetic tree]]

Latest revision as of 22:30, 28 September 2017

see also

refseq

RefSeq primate assemblies
count taxId scientific name common name hgwdev latest

assembly(count)

RR latest

assembly(count)

photo file
1 9606 Homo sapiens Human hg38(6) hg38(6) Homo_sapiens.jpg
2 9598 Pan troglodytes Chimpanzee panTro5(5) panTro5(5) Pan_troglodytes.jpg
3 9601 Pongo abelii Orangutan ponAbe2(1) ponAbe2(1) Pongo_pygmaeus_abelii.jpg
4 9483 Callithrix jacchus Marmoset calJac3(2) calJac3(2) Callithrix_jacchus.jpg
5 61853 Nomascus leucogenys Northern white cheeked gibbon nomLeu3(3) nomLeu3(3) Nomascus_leucogenys.jpg
6 9593 Gorilla gorilla gorilla Gorilla gorGor5(5) gorGor5(4) Gorilla_gorilla_gorilla.jpg
7 1868482 Carlito syrichta Tarsius syrichta tarSyr2(2) tarSyr2(2) Carlito_syrichta.jpg
8 30608 Microcebus murinus Gray mouse lemur micMur2(2) micMur2(2) Microcebus_murinus.jpg
9 30611 Otolemur garnettii Garnett's Greater Galago otoGar3(2) otoGar3(2) Otolemur_garnettii.jpg
10 27679 Saimiri boliviensis boliviensis Bolivian squirrel monkey saiBol1(1) saiBol1(1) Saimiri_boliviensis.jpg
11 9597 Pan paniscus Bonobo panPan2(2) panPan1(1) Pan_paniscus.jpg
12 9555 Papio anubis Baboon papAnu2(1) papAnu2(1) Papio_anubis.jpg
13 9541 Macaca fascicularis Macaca irus macFas5(1) macFas5(1) Macaca_fascicularis.jpg
14 60711 Chlorocebus sabaeus Green monkey chlSab2(2) chlSab2(2) Chlorocebus_sabaeus.jpg
15 61622 Rhinopithecus roxellana Golden snub-nosed monkey rhiRox1(1) rhiRox1(1) Rhinopithecus_roxellana.jpg
16 9544 Macaca mulatta Rhesus monkey rheMac8(5) rheMac8(4) Macaca_mulatta.jpg
17 54131 Colobus angolensis palliatus Angola colobus colAng1(1) colAng1 TBD Colobus_angolensis_palliatus.jpg
18 9568 Mandrillus leucophaeus Drill manLeu1(1) manLeu1 TBD Mandrillus_leucophaeus.jpg
19 37293 Aotus nancymaae Nancy Ma's night monkey aotNan1(1) aotNan1 TBD Aotus_nancymaae.jpg
20 9531 Cercocebus atys Sooty mangabey cerAty1(1) cerAty1 TBD Cercocebus_atys.jpg
21 9545 Macaca nemestrina Pigtail monkey macNem1(1) macNem1 TBD Macaca_nemestrina.jpg
22 379532 Propithecus coquereli Coquerel's sifaka proCoq1(1) proCoq1 TBD Propithecus_coquereli.jpg
23 9516 Cebus capucinus imitator White-faced sapajou cebCap1(1) cebCap1 TBD Cebus_capucinus_imitator.jpg
24 61621 Rhinopithecus bieti Black snub nosed monkey rhiBie1(1) rhiBie1 TBD Rhinopithecus_bieti.jpg

genbank

Additional genbank primate assemblies
count taxId scientific name common name hgwdev latest

assembly(count)

RR latest

assembly(count)

photo file
1 43780 Nasalis larvatus Proboscis monkey nasLar1(1) nasLar1(1) Nasalis_larvatus.jpg
2 31869 Daubentonia madagascariensis Aye-aye dauMad1 TBD dauMad1 TBD Daubentonia_madagascariensis.jpg TBD
3 30602 Eulemur macaco Black lemur eulMac1 TBD eulMac1 TBD Eulemur_macaco.jpg TBD
4 87288 Eulemur flavifrons Sclater's lemur eulFla1 TBD eulFla1 TBD Eulemur_flavifrons.jpg TBD

phylo tree

Genbank phylogenetic tree

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