Releasing an assembly: Revision history

8 February 2011

• curprev 00:5500:55, 8 February 2011‎ Marygoldman talk contribs‎ 25,738 bytes +1‎ →‎Check that all of the MySQL tables are in good repair
• curprev 00:5400:54, 8 February 2011‎ Marygoldman talk contribs‎ 25,737 bytes +2‎ →‎Check to make sure that none of the table names have underscores(_)
• curprev 00:5400:54, 8 February 2011‎ Marygoldman talk contribs‎ 25,735 bytes −7‎ →‎Run featureBits to verify that the gold and gap tables together cover the entire genome
• curprev 00:5300:53, 8 February 2011‎ Marygoldman talk contribs‎ 25,742 bytes −1‎ →‎Check indices
• curprev 00:5200:52, 8 February 2011‎ Marygoldman talk contribs‎ 25,743 bytes +31‎ →‎Check indices
• curprev 00:5000:50, 8 February 2011‎ Marygoldman talk contribs‎ 25,712 bytes +1‎ →‎Check that all tables in this database are mentioned in all.joiner
• curprev 00:5000:50, 8 February 2011‎ Marygoldman talk contribs‎ 25,711 bytes +4‎ →‎joinerCheck
• curprev 00:2600:26, 8 February 2011‎ Marygoldman talk contribs‎ 25,707 bytes −3‎ →‎Turn on GenBank updates
• curprev 00:2000:20, 8 February 2011‎ Marygoldman talk contribs‎ m 25,710 bytes +1‎ →‎Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
• curprev 00:2000:20, 8 February 2011‎ Marygoldman talk contribs‎ 25,709 bytes +103‎ →‎Review phylogenetic location in pull-down menus on hgGateway
• curprev 00:1800:18, 8 February 2011‎ Marygoldman talk contribs‎ m 25,606 bytes −6‎ →‎Test on hgwbeta: re-ordering list
• curprev 00:1600:16, 8 February 2011‎ Marygoldman talk contribs‎ 25,612 bytes +6‎ →‎Check the .2bit files
• curprev 00:1300:13, 8 February 2011‎ Marygoldman talk contribs‎ m 25,606 bytes −1‎ →‎Push /gbdb/$db and html/description.html=
• curprev 00:1300:13, 8 February 2011‎ Marygoldman talk contribs‎ 25,607 bytes −25‎ →‎Push files
• curprev 00:0900:09, 8 February 2011‎ Marygoldman talk contribs‎ 25,632 bytes −4‎ →‎=genomeClade and gdbPdb
• curprev 00:0800:08, 8 February 2011‎ Marygoldman talk contribs‎ 25,636 bytes −2‎ →‎genomeClade and gdbPdb

7 February 2011

• curprev 23:5823:58, 7 February 2011‎ Marygoldman talk contribs‎ 25,638 bytes −3‎ →‎blatServers
• curprev 23:4923:49, 7 February 2011‎ Marygoldman talk contribs‎ 25,641 bytes +28‎ →‎blatServers
• curprev 23:4923:49, 7 February 2011‎ Marygoldman talk contribs‎ 25,613 bytes +20‎ →‎blatServers
• curprev 23:4823:48, 7 February 2011‎ Marygoldman talk contribs‎ 25,593 bytes −194‎ →‎blatServers
• curprev 23:4423:44, 7 February 2011‎ Marygoldman talk contribs‎ 25,787 bytes +2‎ →‎dbDb
• curprev 23:4223:42, 7 February 2011‎ Marygoldman talk contribs‎ 25,785 bytes +29‎ →‎Push chain/net tables in other organisms
• curprev 23:4123:41, 7 February 2011‎ Marygoldman talk contribs‎ 25,756 bytes −9‎ →‎Create database on hgwbeta and push tables for $db
• curprev 23:3923:39, 7 February 2011‎ Marygoldman talk contribs‎ 25,765 bytes −27‎ →‎Create database on hgwbeta and push tables for $db
• curprev 23:3823:38, 7 February 2011‎ Marygoldman talk contribs‎ 25,792 bytes +5‎ →‎Check if chromosome sizes have changed significantly
• curprev 23:3423:34, 7 February 2011‎ Marygoldman talk contribs‎ 25,787 bytes −9‎ →‎Send email to markd and Jeltje van Baren: jeltje at cse.wustl.edu so that they can being doing their N-Scan predictions
• curprev 23:3223:32, 7 February 2011‎ Marygoldman talk contribs‎ 25,796 bytes −3‎ →‎Check that there the chain/nets and liftOvers listed in the pushQ are to valid assemblies on the RR

20 January 2011

• curprev 00:0300:03, 20 January 2011‎ Rhead talk contribs‎ m 25,799 bytes +5‎ →‎Update hgcentralbeta: bold checkMetaData.csh

19 January 2011

• curprev 23:4623:46, 19 January 2011‎ Marygoldman talk contribs‎ m 25,794 bytes −8‎ →‎Next day follow-up
• curprev 23:4523:45, 19 January 2011‎ Marygoldman talk contribs‎ m 25,802 bytes −4‎ →‎Enable Assembly on RR and post-release follow-up: formatting
• curprev 23:4423:44, 19 January 2011‎ Marygoldman talk contribs‎ m 25,806 bytes −3‎ →‎Stage assembly on Round Robin: formatting
• curprev 23:4423:44, 19 January 2011‎ Marygoldman talk contribs‎ m 25,809 bytes −8‎ →‎Verify the downloads: formatting
• curprev 23:3523:35, 19 January 2011‎ Marygoldman talk contribs‎ m 25,817 bytes −1‎ →‎Check that all of the MySQL tables are in good repair: formatting
• curprev 23:3423:34, 19 January 2011‎ Marygoldman talk contribs‎ m 25,818 bytes −2‎ →‎Make sure that there is a liftOver file from the previous assembly to this assembly: formatting
• curprev 23:3423:34, 19 January 2011‎ Marygoldman talk contribs‎ m 25,820 bytes −9‎ →‎Check to make sure that none of the table names have underscores(_): formatting
• curprev 23:3423:34, 19 January 2011‎ Marygoldman talk contribs‎ m 25,829 bytes −2‎ →‎Check indices: formatting
• curprev 23:3323:33, 19 January 2011‎ Marygoldman talk contribs‎ m 25,831 bytes −2‎ →‎Check that all tables in this database are mentioned in all.joiner=: formatting
• curprev 23:3323:33, 19 January 2011‎ Marygoldman talk contribs‎ m 25,833 bytes 0‎ →‎Check that common keys between tables are in sync: formatting
• curprev 23:3223:32, 19 January 2011‎ Marygoldman talk contribs‎ m 25,833 bytes −2‎ →‎Review phylogenetic location in pull-down menus on hgGateway: formatting
• curprev 23:3123:31, 19 January 2011‎ Marygoldman talk contribs‎ 25,835 bytes −2‎ →‎Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
• curprev 23:3123:31, 19 January 2011‎ Marygoldman talk contribs‎ m 25,837 bytes −2‎ →‎Turn on GenBank updates: formatting
• curprev 23:3023:30, 19 January 2011‎ Marygoldman talk contribs‎ m 25,839 bytes −1‎ →‎Make trackDb on hgwbeta: formatting
• curprev 23:3023:30, 19 January 2011‎ Marygoldman talk contribs‎ m 25,840 bytes −2‎ →‎Push image file to hgwbeta and rr: formatting
• curprev 23:2223:22, 19 January 2011‎ Marygoldman talk contribs‎ m 25,842 bytes −1‎ →‎liftOverChain: formatting
• curprev 23:2123:21, 19 January 2011‎ Marygoldman talk contribs‎ m 25,843 bytes −61‎ →‎blatServers: formatting
• curprev 23:2023:20, 19 January 2011‎ Marygoldman talk contribs‎ m 25,904 bytes −1‎ →‎dbDb: formatting
• curprev 23:1923:19, 19 January 2011‎ Marygoldman talk contribs‎ m 25,905 bytes −1‎ →‎Push chain/net tables in other organisms: formatting
• curprev 23:1923:19, 19 January 2011‎ Marygoldman talk contribs‎ m 25,906 bytes −9‎ →‎Create database on hgwbeta and push tables for $db: formatting
• curprev 23:1723:17, 19 January 2011‎ Marygoldman talk contribs‎ m 25,915 bytes −2‎ →‎Check if chromosome sizes have changed significantly: formatting

• curprev 23:1123:11, 19 January 2011‎ Marygoldman talk contribs‎ 25,917 bytes +25,917‎ New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update assembly, check to see if chromosome sizes have changed ...