User contributions for AngieHinrichs
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19 March 2010
- 17:1317:13, 19 March 2010 diff hist +38 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 17:1117:11, 19 March 2010 diff hist +1,001 ABRF2010 Tutorial →Viewing alignments in BAM format
- 16:5116:51, 19 March 2010 diff hist +42 ABRF2010 Tutorial →Viewing alignments in BAM format: <nowiki> for fyi-URL; bold for something they should copy-paste.
- 16:3116:31, 19 March 2010 diff hist −66 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing: Make URL-to-paste bold + <nowiki>.
- 16:2716:27, 19 March 2010 diff hist +20 ABRF2010 Tutorial →Genome Graphs with .sgr data: Make URLs bold + <nowiki>
18 March 2010
- 16:5216:52, 18 March 2010 diff hist +112 ABRF2010 Tutorial No edit summary
- 05:5805:58, 18 March 2010 diff hist +1,563 ABRF2010 Tutorial filling in some blanks
- 05:0405:04, 18 March 2010 diff hist +4,254 N ABRF2010 Tutorial skeletal first draft.
26 February 2010
- 23:1223:12, 26 February 2010 diff hist +582 Build Environment Variables →USE_BAM: Added KNETFILE_HOOKS.
25 October 2009
- 03:4403:44, 25 October 2009 diff hist +463 UdcFuse added some impl considerations
20 October 2009
- 22:3322:33, 20 October 2009 diff hist +21 m UdcFuse fixed whitespace for readdir prototype
- 22:3122:31, 20 October 2009 diff hist +1,177 UdcFuse Updated method descriptions.
15 October 2009
- 20:5920:59, 15 October 2009 diff hist −207 UdcFuse unbailing - Mark found that kernel handles seek by passing offset to read function.
13 October 2009
- 00:2200:22, 13 October 2009 diff hist +161 UdcFuse FUSE doesn't do seek... bailing. :(
12 October 2009
- 22:2722:27, 12 October 2009 diff hist +2,475 UdcFuse basics of filesystem structure, FUSE methods
- 19:1319:13, 12 October 2009 diff hist +1,692 N UdcFuse intro
5 October 2009
- 20:4620:46, 5 October 2009 diff hist +720 Make your own virtual space Most hgwdev-$USERs have no need to change the central.* settings from the default in cgi-bin/hg.conf.
4 September 2009
- 23:1523:15, 4 September 2009 diff hist +4,431 N Build Environment Variables Initial purpose was simply to describe USE_*, but expanded to cover other shell env vars that common.mk looks at.
- 21:2721:27, 4 September 2009 diff hist +1 Generic Makefile Use L +=
15 September 2008
- 20:0320:03, 15 September 2008 diff hist +890 Migration to hive Added "Who's responsible?" section.
- 19:5019:50, 15 September 2008 diff hist +195 m Migration to hive →GPFS vs. NFS, or how to move directories: clarifications
- 19:4019:40, 15 September 2008 diff hist +5,086 N Migration to hive Draft guidelines for migrating our files from old NFS servers to the new /hive.
27 August 2008
- 23:5323:53, 27 August 2008 diff hist −107 Presentations →2008: Removed Erich's presentation -- concerns about contents.
- 21:1721:17, 27 August 2008 diff hist +610 Presentations Added a few of my presentations from the past few years.
- 20:5720:57, 27 August 2008 diff hist +169 N File:Browsers CSHL Chicken 2005 05.ppt Presentation about the UCSC Genome Browser and Table Browser, at the Chicken Genome meeting at CSHL in May 2005 (just before the Biology of Genomes mtg, not part of it). current
- 20:5420:54, 27 August 2008 diff hist +91 N File:Automation 2006 09 12 v2.ppt Sep. 21, 2006 Genecats presentation about the scripts that ended up in hg/utils/automation. current
- 20:5120:51, 27 August 2008 diff hist +111 N File:Bejerano Lab 2008 03 31.ppt Crash course on making use of the kent/src tree, presented to Gill Bejerano's group at Stanford March 31, 2008. current
- 20:3920:39, 27 August 2008 diff hist +107 Presentations →2008: Added Erigh's 8/27/08 presentation.
- 20:3820:38, 27 August 2008 diff hist +47 N File:Swarm.ppt Erich's presentation at the 8.27.2008 genecats. current
21 April 2008
- 19:4819:48, 21 April 2008 diff hist −120 PCR on cDNA Updated description of seqTable and extFileTable which are now optional (seqFile can be used instead). current
11 April 2008
- 22:5622:56, 11 April 2008 diff hist −82 m PCR on cDNA No edit summary
- 22:5422:54, 11 April 2008 diff hist +6,553 N PCR on cDNA After-the-fact/in-progress design doc.
9 February 2008
- 00:2200:22, 9 February 2008 diff hist +37 DbSNP Track Notes →Track tables and files: -- updated, having built the extras for human,
24 January 2008
- 05:3405:34, 24 January 2008 diff hist +3,675 DbSNP Track Notes Updated after putting snp128 in the pushQ; could still say a lot more.
12 December 2007
- 23:1923:19, 12 December 2007 diff hist +8 m Ensembl tutorial signup →Attending
30 November 2007
- 05:3505:35, 30 November 2007 diff hist +4,805 N DbSNP Track Notes First draft of notes on SNP track development.
14 November 2007
- 21:0721:07, 14 November 2007 diff hist +207 Whole genome alignment howto Added links to Blastz, Conservation_Track and the modEncode wiki page that AngieTest was a draft for.
- 20:5420:54, 14 November 2007 diff hist +34 m Chains Nets Added Category:Comparative Genomics
- 20:5320:53, 14 November 2007 diff hist +34 m Blastz Added Category:Comparative Genomics
- 20:5120:51, 14 November 2007 diff hist −72 Conservation Track Added links to Blastz and Chains_Nets; wiki-formatted. current
- 20:2820:28, 14 November 2007 diff hist +14 Implementation Notes Added Blastz.
- 20:2720:27, 14 November 2007 diff hist +75 m Blastz added Category:Technical FAQ and link to Implementation Notes.
- 20:1920:19, 14 November 2007 diff hist +391 Chains Nets Added references to the new Blastz page; updated some kent/src paths.
- 20:0720:07, 14 November 2007 diff hist +4,182 N Blastz Brief description w/references, UCSC history, and the 3 different meanings of "repeats" / "masking".
25 October 2007
- 17:4217:42, 25 October 2007 diff hist +2,640 N Coordinate Transforms Brief description of 1-based fully closed vs. 0-based half-open, example w/translating coords to opposite strand.
10 October 2007
- 19:1319:13, 10 October 2007 diff hist −16,639 AngieTest Gutted contents to avoid dangling category reference. current
10 September 2007
- 19:4619:46, 10 September 2007 diff hist +2,651 m AngieTest Polishing... formatting, shorthand to text.
6 September 2007
- 23:2523:25, 6 September 2007 diff hist +1,570 m AngieTest minor formatting tweaks / clarifications
- 23:0723:07, 6 September 2007 diff hist +13,127 N AngieTest first draft of GBrowse UCSC plugin howto.
30 August 2007
- 05:1505:15, 30 August 2007 diff hist +196 AutoSql Added details about autoSql type support from MarkD.
29 August 2007
- 23:0323:03, 29 August 2007 diff hist +4,907 AutoSql Added long-winded browser-qa missive
12 September 2006
- 05:5105:51, 12 September 2006 diff hist −16 Main Page →Current Hot Topics: Replaced High Throughput Genome Builds meeting notes with Automation doc page
25 August 2006
- 18:5618:56, 25 August 2006 diff hist +94 Automation →Automation Wish List
- 18:5518:55, 25 August 2006 diff hist +1,283 Automation →Existing Automation Scripts
- 18:4118:41, 25 August 2006 diff hist +981 Automation →Automation Scripting Infrastructure
- 18:2118:21, 25 August 2006 diff hist +3 Automation →Automation Wish List
22 August 2006
- 23:5523:55, 22 August 2006 diff hist +1,689 Automation Started fleshing out a bit, still lots more to add and need to make a page per lib module and script.
21 August 2006
- 23:3823:38, 21 August 2006 diff hist +10 m Automation added genscan to wishlist
- 23:2723:27, 21 August 2006 diff hist +2,007 N Automation Outline of documentation for genome db build automation.
- 23:1823:18, 21 August 2006 diff hist 0 m High Throughput Genome Builds oops, typo in date of genecats meeting current
- 22:4122:41, 21 August 2006 diff hist +170 N Category:Automation New Automation category for doc/how-to of genome db build scripts.
- 22:3822:38, 21 August 2006 diff hist +102 High Throughput Genome Builds Added note about the genecats meeting that these notes originated from; added to new Automation category.
27 April 2006
- 21:4121:41, 27 April 2006 diff hist +47 m Cookie Session No edit summary
- 21:4121:41, 27 April 2006 diff hist +1,002 N Cookie Session all too brief explanation of our hguid cookie, hgsid CGI var, and hgcentral tables
- 21:3921:39, 27 April 2006 diff hist +106 Implementation Notes added reference to Cookie_Session
- 20:3420:34, 27 April 2006 diff hist +1,665 CpG Islands No edit summary
21 April 2006
- 00:1800:18, 21 April 2006 diff hist +34 m Logged In From Genome Browser No edit summary current
- 00:1500:15, 21 April 2006 diff hist +158 N Logged In From Genome Browser No edit summary
20 April 2006
- 17:0417:04, 20 April 2006 diff hist −11 m User:AngieHinrichs No edit summary current
- 16:4916:49, 20 April 2006 diff hist +2,123 N User:AngieHinrichs No edit summary
- 16:0616:06, 20 April 2006 diff hist +267 Implementation Notes No edit summary
8 April 2006
- 01:0401:04, 8 April 2006 diff hist +5 Chains Nets No edit summary
- 01:0401:04, 8 April 2006 diff hist +9 Chains Nets No edit summary
- 00:5800:58, 8 April 2006 diff hist −1 TableDescriptions No edit summary
- 00:5800:58, 8 April 2006 diff hist +58 TableDescriptions No edit summary
- 00:5700:57, 8 April 2006 diff hist +2 AutoSql No edit summary
7 April 2006
- 23:5623:56, 7 April 2006 diff hist +343 CpG Islands No edit summary
- 23:5123:51, 7 April 2006 diff hist +204 Main Page No edit summary
- 23:4623:46, 7 April 2006 diff hist +340 Chains Nets No edit summary
- 23:4223:42, 7 April 2006 diff hist +2,856 N CpG Islands No edit summary
- 23:0823:08, 7 April 2006 diff hist 0 Chains Nets No edit summary
- 23:0723:07, 7 April 2006 diff hist +24 Chains Nets No edit summary
- 23:0523:05, 7 April 2006 diff hist 0 Chains Nets No edit summary
- 23:0423:04, 7 April 2006 diff hist −15 Chains Nets No edit summary
- 23:0223:02, 7 April 2006 diff hist +4 Chains Nets No edit summary
- 23:0023:00, 7 April 2006 diff hist +2,886 N Chains Nets No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4722:47, 7 April 2006 diff hist +46 TableDescriptions No edit summary
- 22:4722:47, 7 April 2006 diff hist +2,040 N TableDescriptions No edit summary
- 22:2922:29, 7 April 2006 diff hist −1 AutoSql No edit summary
- 22:2822:28, 7 April 2006 diff hist +1 AutoSql No edit summary
- 22:2822:28, 7 April 2006 diff hist +7 AutoSql No edit summary
- 22:2622:26, 7 April 2006 diff hist +47 AutoSql No edit summary
- 22:2622:26, 7 April 2006 diff hist +1,288 N AutoSql No edit summary
- 22:1222:12, 7 April 2006 diff hist −10 Implementation Notes No edit summary
- 22:0522:05, 7 April 2006 diff hist +15 Implementation Notes No edit summary
- 22:0422:04, 7 April 2006 diff hist +37 Implementation Notes No edit summary
- 22:0022:00, 7 April 2006 diff hist +640 N Implementation Notes Implementation details that QAers often ask developers about
