User contributions for AngieHinrichs
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11 April 2024
- 22:4722:47, 11 April 2024 diff hist +322 Presentations →2024: Added Viral Sub-species Classification Workshop presentation on UShER & autolin current
2 August 2023
- 22:4822:48, 2 August 2023 diff hist +272 Presentations →2023: Added ABPHM presentation on UShER
27 September 2022
- 00:0200:02, 27 September 2022 diff hist +231 m Presentations →2022: added California Dept. of Health presentation from back in Feb.
25 May 2022
- 23:0223:02, 25 May 2022 diff hist +262 Presentations →2022: Added SPHERES presentation on Pango lineages (brief intro & example)
12 April 2022
- 18:5418:54, 12 April 2022 diff hist +234 Presentations Added 2022 section with April presentation on pangolin v4 updates for public health (Theiagen)
19 November 2021
- 23:2423:24, 19 November 2021 diff hist +205 Presentations →2021: Adding PDF slides and video links for StaPH-B presentation on pangolin --usher
- 19:2519:25, 19 November 2021 diff hist +240 Presentations →2021: Added StaPH-B presentation on pangolin's --usher mode
14 October 2021
- 15:2315:23, 14 October 2021 diff hist +295 Presentations →2021: Added PH4GE Pipelines & Viz group meeting presentation on UShER
2 June 2021
- 00:3200:32, 2 June 2021 diff hist +245 Presentations →2021: Added Theiagen Office Hours presentation on pangolin v3.0
12 February 2021
- 23:2923:29, 12 February 2021 diff hist +4 m Presentations add some commas
- 23:2723:27, 12 February 2021 diff hist +205 Presentations →2021: Added 2021 section with Angie's demo for Russ's class
23 November 2020
- 20:2320:23, 23 November 2020 diff hist +170 Presentations →2020: Added presentation on SARS-CoV-2 / hgPhyloPlace
22 April 2019
- 21:5021:50, 22 April 2019 diff hist +187 Presentations →2019: Added slides for dbSNP 2.0 talk
30 October 2018
- 19:2319:23, 30 October 2018 diff hist +249 Presentations →2018: Added presentation on adding patch sequences
31 October 2017
- 18:3018:30, 31 October 2017 diff hist +258 Presentations →2017: Added Genome Informatics poster
- 18:2718:27, 31 October 2017 diff hist +151 N File:GenomeInformatics2017.pages Mac Pages (analogous to PPT) file for Genome Informatics 2017 poster on support for HGVS terms in the Genome Browser and Variant Annotation Integrator. current
- 18:2218:22, 31 October 2017 diff hist +138 N File:GenomeInformatics2017.pdf Poster (36"x42") presented at Genome Informatics 2017 about support for HGVS terms in the Genome Browser and Variant Annotation Integrator current
14 September 2017
- 16:5716:57, 14 September 2017 diff hist +412 Presentations →2017: Added internal HGVS presentation and GA4GH VATT presentation on shared HGVS test set
31 August 2016
- 16:2416:24, 31 August 2016 diff hist +893 Git pull: what happens when and why? Added section on git pull --rebase and some wiki formatting.
23 September 2015
- 18:5618:56, 23 September 2015 diff hist +6 Debugging cgi-scripts →Debugging with GDB: added 'run' step to gdb instructions
4 June 2015
- 19:0319:03, 4 June 2015 diff hist +2 BoG2015DataIntegratorPoster Updated one more link: demo6 --> preview current
1 May 2015
- 18:4518:45, 1 May 2015 diff hist +1 m BoG2015DataIntegratorPoster typo fix
- 18:4418:44, 1 May 2015 diff hist +123 m BoG2015DataIntegratorPoster →Other posters about the UCSC Genome Browser: Change File: to Media: for direct link; make formatting consistent
- 18:3518:35, 1 May 2015 diff hist +9 m BoG2015DataIntegratorPoster fix url formatting
- 18:3418:34, 1 May 2015 diff hist 0 m BoG2015DataIntegratorPoster →Poster: decapitalize
- 18:3418:34, 1 May 2015 diff hist +356 Presentations →2015: Adding BoG2015 poster on Data Integrator. Also changed File: to Media: to link to actual files instead of File: pages
- 18:2418:24, 1 May 2015 diff hist +51 BoG2015DataIntegratorPoster →Poster: Adding PDF & PPTX files
- 18:1918:19, 1 May 2015 diff hist +78 N File:BoG2015DataIntegrator.pptx poster on the Data Integrator presented at Biology of Genomes, CSHL, May 2015. current
- 18:1718:17, 1 May 2015 diff hist +75 N File:BoG2015DataIntegrator.pdf poster on the Data Integrator, presented at Biology of Genomes, CSHL, 2015. current
- 05:5605:56, 1 May 2015 diff hist +141 BoG2015DataIntegratorPoster →How to get help: Adding note that genome is public as suggested by Ann; adding genome-www private option
30 April 2015
- 16:4816:48, 30 April 2015 diff hist +300 BoG2015DataIntegratorPoster →How to get help: Added training URLs from b0b.
29 April 2015
- 23:1523:15, 29 April 2015 diff hist +51 m BoG2015DataIntegratorPoster →Data Integrator: mention session
- 23:1323:13, 29 April 2015 diff hist +324 BoG2015DataIntegratorPoster →Data Integrator: Add link to session on demo6; hopefully it will be on genome-preview by May 5th.
27 April 2015
- 23:1523:15, 27 April 2015 diff hist −30 m HGV2011 →Other links: fix broken link
- 23:0123:01, 27 April 2015 diff hist +6 m BoG2015DataIntegratorPoster →Poster: ...: don't include the verbose title in the section header.
- 22:5922:59, 27 April 2015 diff hist +1,411 m BoG2015DataIntegratorPoster Copying still more from Brooke's BoG2013VariationPoster and adding a reference to more recent posters
- 22:5122:51, 27 April 2015 diff hist +447 m BoG2015DataIntegratorPoster copying more of Brooke's structure
- 22:4422:44, 27 April 2015 diff hist +487 Nm BoG2015DataIntegratorPoster Skeleton of a page for Angie's poster on the Data Integrator at Biology of Genomes 2015
16 April 2015
- 19:1019:10, 16 April 2015 diff hist +3,356 Chains Nets Split into sections, wrote an intro and basic definitions. The Nets section needs more work, but at least this is an improvement.
11 March 2015
- 20:5320:53, 11 March 2015 diff hist +59 Presentations →2015: Adding files for 11 March 15 talk
- 20:5020:50, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pdf slides for Angie's presentation on hgAi (Annotation Integrator) March 11, 2015 current
- 20:4720:47, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pptx slides for Angie's presentation on hgAi (Annotation Integrator) March 15, 2015 current
- 20:4620:46, 11 March 2015 diff hist +84 m Presentations →2015: placeholder for talk (no files yet)
- 20:4420:44, 11 March 2015 diff hist +10 m Presentations Added 2015
6 March 2014
- 18:0818:08, 6 March 2014 diff hist +29 Demo sandbox →Claimed sandbox table: claimed demo6
- 17:5917:59, 6 March 2014 diff hist +470 Demo sandbox Updating info about which demo machines have their own htdocs-demo* directory (now all but demo3 and demo5).
17 January 2014
- 04:3204:32, 17 January 2014 diff hist +41 Demo sandbox →Claimed sandbox table: Tim asked for demo1 and I don't need it anymore.
30 April 2013
- 17:0517:05, 30 April 2013 diff hist +31 Demo sandbox →Claimed sandbox table: demo1
13 November 2012
- 21:0921:09, 13 November 2012 diff hist +246 Build Environment Variables →External library configuration (USE_*): Mark USE_BAM and USE_TABIX sections as obsoleted by USE_SAMTABIX.
- 21:0221:02, 13 November 2012 diff hist −6 Build Environment Variables →Coming soon: USE_SAMTABIX: v275 is here!
- 20:5820:58, 13 November 2012 diff hist +96 KNETFILE HOOKS →Coming Soon!: v275 is out! Make this more prominent.
18 October 2012
- 04:0504:05, 18 October 2012 diff hist +708 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added section about samtabix, which hopefully will soon obviate patching & separate samtools and tabix!
17 October 2012
- 23:2123:21, 17 October 2012 diff hist +388 KNETFILE HOOKS →Description: Adding note about samtabix, which will soon make this obsolete, yay!
10 October 2012
- 18:2418:24, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent samtools patch file
- 18:2318:23, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent tabix version
- 18:2218:22, 10 October 2012 diff hist +44 KNETFILE HOOKS →Patch files for tabix: Added patch for tabix-0.2.6. MLQ #9102
- 18:2118:21, 10 October 2012 diff hist +225 N File:Knetfile hooks tabix-0.2.6.patch Modifies tabix library from [http://samtools.sourceforge.net/ samtools.sourceforge.net] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
18 September 2012
- 18:2418:24, 18 September 2012 diff hist 0 KNETFILE HOOKS →Apply Patch: Gert Hulselmans pointed out that patch files begin with capital K (wiki forces uploaded file names to begin w/capital letter),
2 July 2012
- 22:1722:17, 2 July 2012 diff hist 0 m Presentations →2012: formatting fix
- 22:1522:15, 2 July 2012 diff hist +227 Presentations →2012: Added Biology of Genomes poster
7 May 2012
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pptx PPTX of Angie's Biology of Genomes 2012 poster current
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pdf PDF for Angie's Biology of Genomes 2012 poster current
- 15:5915:59, 7 May 2012 diff hist +3,026 N BoG2012VariationPoster Page with links to poster source, session links, 1kG data used, help pages etc. current
14 December 2011
- 16:5316:53, 14 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": Ugh, really uploading the updated file now. current
13 December 2011
- 23:5823:58, 13 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This now renames all instances of bgzf_ to ti_bgzf_ because some versions of samtools have more conflicts than others and the previous patch wasn't renaming enough bgzf_ func
7 December 2011
- 18:5518:55, 7 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This was out of date; it was missing the change from bgzf_tell to ti_bgzf_tell.
8 November 2011
- 22:5322:53, 8 November 2011 diff hist +412 Demo sandbox Added a subsection about dealing with possible rsync errors when building CGIs.
- 19:2519:25, 8 November 2011 diff hist +9 m Demo sandbox →Your demo responsibility: "assembly" -> "trackDb_demo''N''"
- 19:2319:23, 8 November 2011 diff hist +69 Demo sandbox →Building your demo assemblies: USER=demoN on command line; restore USER with /usr/bin/whoami if necessary.
- 19:1619:16, 8 November 2011 diff hist +570 Demo sandbox →Building your demo CGIs: Instead of modifying your shell envi's USER variable, you can set USER on the make command line -- seems cleaner to me. Also, no need for IMAGEEK; /usr/bin/whoami.
- 18:5818:58, 8 November 2011 diff hist +72 Demo sandbox →Claimed sandbox table: demo3
25 October 2011
- 19:0019:00, 25 October 2011 diff hist +287 KNETFILE HOOKS →Description: Added link to github pull request.
17 October 2011
- 17:4517:45, 17 October 2011 diff hist −87 KNETFILE HOOKS Made the samtools version sections into subsections of a samtools version notes section.
- 17:3217:32, 17 October 2011 diff hist +78 KNETFILE HOOKS →Patch files for samtools: added files for 0.1.16, 0.1.17
- 17:3117:31, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.16.patch Patch for samtools-0.1.16 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2817:28, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.17.patch Patch for samtools-0.1.17 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2017:20, 17 October 2011 diff hist +39 KNETFILE HOOKS Added patch file for samtools 0.1.18. Didn't add new section, nothing new to say about this patch relative to prior patches.
- 17:1617:16, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.18.patch Patch for samtools-0.1.18 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
7 September 2011
- 15:5615:56, 7 September 2011 diff hist +255 Presentations →2011: Added HGV2011 poster
- 15:5415:54, 7 September 2011 diff hist −1 HGV2011 →UCSC Genome Browser poster
- 15:5415:54, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pdf No edit summary current
- 15:4615:46, 7 September 2011 diff hist +49 m Presentations →2008
- 15:4415:44, 7 September 2011 diff hist +31 m HGV2011 →Other posters about the UCSC Genome Browser
- 15:4215:42, 7 September 2011 diff hist +246 HGV2011 →Other posters
- 15:1815:18, 7 September 2011 diff hist +7 m HGV2011 No edit summary
- 15:1715:17, 7 September 2011 diff hist +2 m HGV2011 →View poster screenshots in the Genome Browser
- 15:1615:16, 7 September 2011 diff hist +150 HGV2011 →View poster screenshots in the Genome Browser
- 15:1015:10, 7 September 2011 diff hist +113 HGV2011 →Other links
- 15:0815:08, 7 September 2011 diff hist 0 HGV2011 →View poster screenshots in the Genome Browser
- 06:3406:34, 7 September 2011 diff hist +1,490 HGV2011 Adding poster files, screenshot session links
- 06:0906:09, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pptx No edit summary current
- 06:0606:06, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser Abstract.docx No edit summary current
3 September 2011
- 07:2607:26, 3 September 2011 diff hist +17 m HGV2011 added conf. date
- 07:2407:24, 3 September 2011 diff hist +636 N HGV2011 very rough draft -- I intend to put this page's URL on my poster so there's something for people to click around, get poster source/pdf etc.
- 07:0607:06, 3 September 2011 diff hist +148 Presentations →2008: Added Genomics of Common Disease poster.
2 September 2011
- 22:5722:57, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.pdf Poster presented at Genomics of Common Disease, 2008. current
- 22:5522:55, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.ppt Poster presented at Genomics of Common Disease, 2008. current
24 August 2011
- 23:5123:51, 24 August 2011 diff hist +60 KNETFILE HOOKS Added section for tabix-0.2.5
- 23:5023:50, 24 August 2011 diff hist +44 KNETFILE HOOKS →Patch files for tabix
- 23:4923:49, 24 August 2011 diff hist +200 N File:Knetfile hooks tabix-0.2.5.patch Modifies tabix library from [http://samtools.sourceforge.net/] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS.
