User contributions for AngieHinrichs
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6 April 2011
- 20:1720:17, 6 April 2011 diff hist +95 N File:VariationGenecats20110406.pdf PDF version of .pptx slides -- animations are squashed so one slide isn't very readable, sorry.
- 20:1620:16, 6 April 2011 diff hist +184 Presentations →2011: Added April 6 genecats on human variation track work
- 20:1020:10, 6 April 2011 diff hist +85 N File:VariationGenecats20110406.pptx Angie's recent fun with dbSNP, VCF and GVF, from a browser developer's point of view.
16 March 2011
- 16:3516:35, 16 March 2011 diff hist +202 N File:Knetfile hooks tabix-0.2.3.patch Modifies tabix library from [http://samtools.sourceforge.net/] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
- 16:3216:32, 16 March 2011 diff hist +863 KNETFILE HOOKS Adding tabix KNETFILE_HOOKS patch.
- 16:0916:09, 16 March 2011 diff hist +2,129 Build Environment Variables →External library configuration (USE_*): Added section for USE_TABIX (+KNETFILE_HOOKS).
29 November 2010
- 19:0419:04, 29 November 2010 diff hist +570 KNETFILE HOOKS Added samtools-0.1.{9,10,11}
- 18:5918:59, 29 November 2010 diff hist +73 KNETFILE HOOKS →Apply Patch: Added -p1 which is necessary 0.1.9 and later, and updated suggested version to 0.1.11.
- 18:5818:58, 29 November 2010 diff hist +116 KNETFILE HOOKS →Patch files: Added files for 0.1.{9,10,11}
- 18:5718:57, 29 November 2010 diff hist +75 N File:Knetfile hooks.0.1.11.patch Patch for samtools-0.1.11 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 18:5618:56, 29 November 2010 diff hist +75 N File:Knetfile hooks.0.1.10.patch Patch for samtools-0.1.10 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 18:5518:55, 29 November 2010 diff hist +74 N File:Knetfile hooks.0.1.9.patch Patch for samtools-0.1.9 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
12 May 2010
- 21:3621:36, 12 May 2010 diff hist +61 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added link to samtools extension (knetfile_hooks).
20 March 2010
- 06:1006:10, 20 March 2010 diff hist +130 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 06:0706:07, 20 March 2010 diff hist +38 N File:ABRF2010 UCSC NGS.pdf backup in case workshop internet fails current
- 06:0706:07, 20 March 2010 diff hist +38 N File:ABRF2010 UCSC NGS.ppt backup in case workshop internet fails current
- 05:1305:13, 20 March 2010 diff hist +446 ABRF2010 Tutorial →Steps
- 05:1005:10, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export baseQual.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 05:0705:07, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export grayQual.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 05:0405:04, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export 1MB.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:5904:59, 20 March 2010 diff hist +155 ABRF2010 Tutorial →Steps
- 04:5804:58, 20 March 2010 diff hist 0 File:ABRF2010 TFBS.png uploaded a new version of "Image:ABRF2010 TFBS.png": smaller still, sheesh current
- 04:5604:56, 20 March 2010 diff hist 0 File:ABRF2010 TFBS.png uploaded a new version of "Image:ABRF2010 TFBS.png": a bit narrower, to avoid fuzzy transform
- 04:5204:52, 20 March 2010 diff hist +56 N File:ABRF2010 TFBS.png checkpoint image for demo/tutorial at ABRF 2010 workshop
- 04:4904:49, 20 March 2010 diff hist +167 ABRF2010 Tutorial →Steps
- 04:4704:47, 20 March 2010 diff hist +56 N File:ABRF2010 redbinGt15.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:4304:43, 20 March 2010 diff hist +188 ABRF2010 Tutorial →Steps
- 04:3904:39, 20 March 2010 diff hist +56 N File:ABRF2010 redbin 1.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:2304:23, 20 March 2010 diff hist 0 File:ABRF2010 ggData.png uploaded a new version of "Image:ABRF2010 ggData.png": smaller -- the original was getting transformed down to 800 pix wide, which still didn't fit very well in 1020-pix wide browser and looked fuzzy. current
- 00:0600:06, 20 March 2010 diff hist +148 ABRF2010 Tutorial →Steps: Added first image with catch-up link
19 March 2010
- 23:5423:54, 19 March 2010 diff hist +56 N File:ABRF2010 ggData.png checkpoint image for demo/tutorial at ABRF 2010 workshop
- 22:5522:55, 19 March 2010 diff hist +39 ABRF2010 Tutorial →Extra
- 22:3222:32, 19 March 2010 diff hist +11 ABRF2010 Tutorial →Steps
- 22:3022:30, 19 March 2010 diff hist +205 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser: credits to Charlie
- 22:1022:10, 19 March 2010 diff hist +280 ABRF2010 Tutorial →Where to learn more: added links
- 22:0522:05, 19 March 2010 diff hist +3,756 ABRF2010 Tutorial →Steps: Added details, session links and b0b's SNP regions.
- 18:3418:34, 19 March 2010 diff hist +881 ABRF2010 Tutorial →Steps
- 18:2318:23, 19 March 2010 diff hist +530 ABRF2010 Tutorial →Steps
- 18:0618:06, 19 March 2010 diff hist +50 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 18:0518:05, 19 March 2010 diff hist +619 ABRF2010 Tutorial →Steps: added session links
- 17:4517:45, 19 March 2010 diff hist +1 ABRF2010 Tutorial →Steps
- 17:4417:44, 19 March 2010 diff hist +300 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing
- 17:3617:36, 19 March 2010 diff hist 0 ABRF2010 Tutorial →Steps
- 17:3517:35, 19 March 2010 diff hist +1 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing
- 17:1717:17, 19 March 2010 diff hist +296 ABRF2010 Tutorial →Comparing with UCSC-hosted data
- 17:1417:14, 19 March 2010 diff hist +2 ABRF2010 Tutorial →Where to learn more
- 17:1317:13, 19 March 2010 diff hist +38 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 17:1117:11, 19 March 2010 diff hist +1,001 ABRF2010 Tutorial →Viewing alignments in BAM format
- 16:5116:51, 19 March 2010 diff hist +42 ABRF2010 Tutorial →Viewing alignments in BAM format: <nowiki> for fyi-URL; bold for something they should copy-paste.
- 16:3116:31, 19 March 2010 diff hist −66 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing: Make URL-to-paste bold + <nowiki>.
