User contributions for Cath Tyner
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25 January 2018
- 00:3100:31, 25 January 2018 diff hist +2,187 Genes in gtf or gff format Adding example for perl script to replace the "gene ID" with the Ensembl ID, which is named "transcript_id."
18 January 2018
- 16:4116:41, 18 January 2018 diff hist +210 Building a new genome database Adding urls that an user missed for step 8, MLQ RM #20842
17 January 2018
- 00:3400:34, 17 January 2018 diff hist −56 m Spreadsheet links to Genome Browser views No edit summary
- 00:3300:33, 17 January 2018 diff hist +309 m Spreadsheet links to Genome Browser views No edit summary
22 December 2017
- 17:2017:20, 22 December 2017 diff hist +209 m Genes in gtf or gff format No edit summary
6 December 2017
- 23:2023:20, 6 December 2017 diff hist −2 m Presentations →2017
- 23:1923:19, 6 December 2017 diff hist +95 Presentations Adding YouTube presentation recording for Jorge's browser map talk
5 December 2017
- 17:4517:45, 5 December 2017 diff hist +94 m Assembly Hubs →Testing with gfClient
- 17:4417:44, 5 December 2017 diff hist +7 m Assembly Hubs →Testing with gfClient
- 17:4317:43, 5 December 2017 diff hist +689 Assembly Hubs →Testing with gfClient: Adding another example from Hiram's response to MLQ 20650
29 November 2017
- 18:0218:02, 29 November 2017 diff hist +19 m Presentations →2017
- 18:0118:01, 29 November 2017 diff hist +40 m Presentations →2017
- 18:0018:00, 29 November 2017 diff hist +148 m Presentations →2017
7 November 2017
- 15:4015:40, 7 November 2017 diff hist +2 m Finding nearby genes →"Nearest gene" script for ncbiRefSeq on hg38
3 November 2017
- 16:0316:03, 3 November 2017 diff hist +154 m Finding nearby genes →Introduction
31 October 2017
- 23:1923:19, 31 October 2017 diff hist +313 m Genes in gtf or gff format →Warning - using a non genePred table to get GTF output in the Table Browser
- 22:5822:58, 31 October 2017 diff hist +107 m Genes in gtf or gff format →Summary of limitations for Table Browser GTF output
- 22:5122:51, 31 October 2017 diff hist −401 m Genes in gtf or gff format →Warning - using a non genePred table to get GTF output in the Table Browser
- 22:1822:18, 31 October 2017 diff hist +35 m Genes in gtf or gff format →Warning - using a non genePred table to get GTF output in the Table Browser
- 22:0722:07, 31 October 2017 diff hist −1 m Genes in gtf or gff format →Warning - using a non genePred table to get GTF output in the Table Browser
- 22:0622:06, 31 October 2017 diff hist −7 m Genes in gtf or gff format →Summary of limitations for Table Browser GTF output
- 22:0522:05, 31 October 2017 diff hist +10 m Genes in gtf or gff format No edit summary
- 22:0522:05, 31 October 2017 diff hist +1,992 m Genes in gtf or gff format No edit summary
- 21:4021:40, 31 October 2017 diff hist +185 m Genes in gtf or gff format →Summary of limitations for Table Browser GTF output
29 August 2017
- 21:1421:14, 29 August 2017 diff hist −77 Assembly Hubs →Overview
- 21:1321:13, 29 August 2017 diff hist −71 Assembly Hubs →Overview
- 21:1321:13, 29 August 2017 diff hist +148 Assembly Hubs No edit summary
10 August 2017
- 21:5121:51, 10 August 2017 diff hist +29 m Genes in gtf or gff format →Get a genePred file from UCSC MySQL public databases, then convert to GTF
- 21:5021:50, 10 August 2017 diff hist −111 m Genes in gtf or gff format →Get a genePred file from UCSC MySQL public databases, then convert to GTF
- 21:4921:49, 10 August 2017 diff hist +397 Genes in gtf or gff format →Get a genePred file from UCSC MySQL public databases, then convert to GTF
- 21:4721:47, 10 August 2017 diff hist +1,392 Genes in gtf or gff format No edit summary
8 August 2017
- 20:0720:07, 8 August 2017 diff hist −2 m Genes in gtf or gff format →Example to compare Table Browser GTF output with genePredToGtf utility output
- 18:2918:29, 8 August 2017 diff hist +14 m Genes in gtf or gff format →Summary of limitations for Table Browser GTF output
- 18:2818:28, 8 August 2017 diff hist −26 m Genes in gtf or gff format →Summary of limitations for Table Browser GTF output
- 18:2618:26, 8 August 2017 diff hist +464 Genes in gtf or gff format No edit summary
- 18:1718:17, 8 August 2017 diff hist +4,446 Genes in gtf or gff format Adding TB vs utility example
14 July 2017
- 16:3816:38, 14 July 2017 diff hist −12 m Table Browser URL No edit summary current
30 May 2017
- 16:2816:28, 30 May 2017 diff hist +188 m Finding nearby genes →Alternatives
28 May 2017
- 13:3113:31, 28 May 2017 diff hist +15 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 13:3013:30, 28 May 2017 diff hist +15 m Finding nearby genes →Script for refGene on hg19
- 13:3013:30, 28 May 2017 diff hist +15 m Finding nearby genes No edit summary
- 13:2813:28, 28 May 2017 diff hist +65 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 13:2813:28, 28 May 2017 diff hist +64 m Finding nearby genes →Script for refGene on hg19
- 13:2713:27, 28 May 2017 diff hist +78 m Finding nearby genes →Script for knownGene on hg18
- 13:2413:24, 28 May 2017 diff hist +27 m Finding nearby genes →Script for refGene on hg19
- 13:2313:23, 28 May 2017 diff hist +90 m Finding nearby genes →Alternatives
27 May 2017
26 May 2017
- 21:2521:25, 26 May 2017 diff hist +37 m Finding nearby genes →Alternatives
- 21:2421:24, 26 May 2017 diff hist +160 Finding nearby genes →Alternatives
- 21:2021:20, 26 May 2017 diff hist −97 m Finding nearby genes →Alternatives
- 21:2021:20, 26 May 2017 diff hist +456 m Finding nearby genes →Alternatives
- 20:5620:56, 26 May 2017 diff hist +139 m Finding nearby genes →Alternatives
- 20:3620:36, 26 May 2017 diff hist +255 m Finding nearby genes →Introduction
- 19:4219:42, 26 May 2017 diff hist +87 m Finding nearby genes →Alternatives
- 19:2819:28, 26 May 2017 diff hist +367 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 19:2819:28, 26 May 2017 diff hist +740 m Finding nearby genes →Script for refGene on hg19
- 19:2219:22, 26 May 2017 diff hist +4 m Finding nearby genes No edit summary
- 19:2119:21, 26 May 2017 diff hist −41 m Finding nearby genes No edit summary
- 19:2019:20, 26 May 2017 diff hist +490 m Finding nearby genes No edit summary
- 19:1519:15, 26 May 2017 diff hist +183 m Finding nearby genes →Script for refGene on hg19
- 19:1419:14, 26 May 2017 diff hist −3 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 19:1319:13, 26 May 2017 diff hist +185 m Finding nearby genes →Script for knownGene on hg18
- 19:1219:12, 26 May 2017 diff hist +1 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 19:1219:12, 26 May 2017 diff hist +194 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 19:1119:11, 26 May 2017 diff hist +17 m Finding nearby genes →Script for ncbiRefSeq on hg38
- 18:5718:57, 26 May 2017 diff hist +4,683 m Finding nearby genes No edit summary
- 18:5418:54, 26 May 2017 diff hist −1 m Finding nearby genes No edit summary
- 18:5418:54, 26 May 2017 diff hist −2 m Finding nearby genes No edit summary
- 18:5318:53, 26 May 2017 diff hist +2 m Finding nearby genes No edit summary
- 18:5218:52, 26 May 2017 diff hist +4,968 Finding nearby genes Adding other script examples for other gene sets/assemblies
15 May 2017
- 20:2720:27, 15 May 2017 diff hist 0 m Presentations →2017
- 20:2620:26, 15 May 2017 diff hist +236 Presentations →2017: Adding the presentation: bar charts in the GB
9 April 2017
- 15:2515:25, 9 April 2017 diff hist +237 Coordinate Transforms Adding FAQ & blog for 0-start references current
24 March 2017
- 19:5419:54, 24 March 2017 diff hist 0 m Finding nearby genes No edit summary
- 19:5219:52, 24 March 2017 diff hist 0 m Finding nearby genes No edit summary
- 18:2618:26, 24 March 2017 diff hist +1 m Main Page No edit summary
- 18:2618:26, 24 March 2017 diff hist +2 m Main Page No edit summary
- 18:2018:20, 24 March 2017 diff hist +2 m Main Page →UCSC Genome Browser Announcements List
- 18:2018:20, 24 March 2017 diff hist +71 m Main Page No edit summary
- 18:1418:14, 24 March 2017 diff hist +441 m Main Page No edit summary
- 18:0918:09, 24 March 2017 diff hist 0 m Main Page →Welcome to the Public Support UCSC Genome Browser Wiki
- 18:0818:08, 24 March 2017 diff hist +37 m Main Page No edit summary
- 18:0518:05, 24 March 2017 diff hist −14 m Main Page No edit summary
- 18:0518:05, 24 March 2017 diff hist −18 m Main Page No edit summary
- 18:0418:04, 24 March 2017 diff hist +1,052 m Main Page No edit summary
17 March 2017
- 20:3820:38, 17 March 2017 diff hist −20 Genes in gtf or gff format →Using Table Browser output as input for the genePredToGtf command line utility
- 20:3820:38, 17 March 2017 diff hist +83 Genes in gtf or gff format No edit summary
- 20:3720:37, 17 March 2017 diff hist +2 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:3720:37, 17 March 2017 diff hist +40 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:3620:36, 17 March 2017 diff hist +286 Genes in gtf or gff format →Bed format gene tracks (convert bed > genePred > GTF)
- 20:3420:34, 17 March 2017 diff hist −140 Genes in gtf or gff format →Use genePredToGtf with a downloaded genePred table
- 20:2120:21, 17 March 2017 diff hist +27 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:2020:20, 17 March 2017 diff hist −1 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:2020:20, 17 March 2017 diff hist +85 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:1820:18, 17 March 2017 diff hist 0 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:1520:15, 17 March 2017 diff hist +118 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:1220:12, 17 March 2017 diff hist +87 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 20:1120:11, 17 March 2017 diff hist +786 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:4819:48, 17 March 2017 diff hist +1 Genes in gtf or gff format →Use genePredToGtf with a downloaded genePred table
- 19:4819:48, 17 March 2017 diff hist +6 Genes in gtf or gff format →Use genePredToGtf with a downloaded genePred table
- 19:4619:46, 17 March 2017 diff hist −610 Genes in gtf or gff format →Using kent commands with the public database server
- 19:4619:46, 17 March 2017 diff hist +927 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:4119:41, 17 March 2017 diff hist −1 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:3319:33, 17 March 2017 diff hist −4 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:3219:32, 17 March 2017 diff hist +32 Genes in gtf or gff format →Bed format gene tracks
- 19:3119:31, 17 March 2017 diff hist +22 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:2819:28, 17 March 2017 diff hist +46 Genes in gtf or gff format →Convert genePred to GTF with the genePredToGtf command line utility
- 19:2619:26, 17 March 2017 diff hist +2 Genes in gtf or gff format →Use genePredToGtf with a downloaded genePred table
- 19:2619:26, 17 March 2017 diff hist +232 Genes in gtf or gff format No edit summary
- 19:1719:17, 17 March 2017 diff hist +55 Genes in gtf or gff format →text file dumps of gene tracks
- 19:1619:16, 17 March 2017 diff hist +2,276 Genes in gtf or gff format No edit summary
27 February 2017
- 17:5217:52, 27 February 2017 diff hist +31 Whole genome alignment howto Highlighting an important file with the needed steps
8 November 2016
- 22:0022:00, 8 November 2016 diff hist −1 LiftOver Howto No edit summary
- 21:5921:59, 8 November 2016 diff hist −1 LiftOver Howto No edit summary
- 21:5921:59, 8 November 2016 diff hist +2 LiftOver Howto No edit summary
- 21:5921:59, 8 November 2016 diff hist +212 LiftOver Howto No edit summary
27 October 2016
- 20:3520:35, 27 October 2016 diff hist +41 Assembly Hubs →Adding BLAT servers
- 20:2920:29, 27 October 2016 diff hist +2 Assembly Hubs →Adding BLAT servers
- 20:2820:28, 27 October 2016 diff hist +455 Assembly Hubs →Adding BLAT servers
- 20:1220:12, 27 October 2016 diff hist +137 Assembly Hubs No edit summary
- 00:5300:53, 27 October 2016 diff hist +2 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:5300:53, 27 October 2016 diff hist +2 Assembly Hubs →Process check
- 00:5300:53, 27 October 2016 diff hist +23 Assembly Hubs →Check for correct path/filename
- 00:5200:52, 27 October 2016 diff hist +1 Assembly Hubs →Check for correct path/filename
- 00:5200:52, 27 October 2016 diff hist +2 Assembly Hubs →Check for correct path/filename
- 00:5100:51, 27 October 2016 diff hist +18 Assembly Hubs →Testing with gfClient
- 00:5000:50, 27 October 2016 diff hist +66 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:4900:49, 27 October 2016 diff hist +1 Assembly Hubs →Testing with gfClient
- 00:4800:48, 27 October 2016 diff hist 0 Assembly Hubs →Adding BLAT servers
- 00:4800:48, 27 October 2016 diff hist +119 Assembly Hubs →Adding BLAT servers
- 00:3900:39, 27 October 2016 diff hist −3 Assembly Hubs →Testing with gfClient
- 00:3900:39, 27 October 2016 diff hist −16 Assembly Hubs →Check for correct path/filename
- 00:3800:38, 27 October 2016 diff hist −2 Assembly Hubs →Process check
- 00:3800:38, 27 October 2016 diff hist −1 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3700:37, 27 October 2016 diff hist +190 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3600:36, 27 October 2016 diff hist −166 Assembly Hubs →Testing with gfClient
- 00:3500:35, 27 October 2016 diff hist +5 Assembly Hubs →Check for correct path/filename
- 00:3400:34, 27 October 2016 diff hist 0 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3300:33, 27 October 2016 diff hist +4 Assembly Hubs →Check for correct path/filename
- 00:3300:33, 27 October 2016 diff hist −4 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3300:33, 27 October 2016 diff hist +38 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3200:32, 27 October 2016 diff hist −3 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3100:31, 27 October 2016 diff hist −2 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3100:31, 27 October 2016 diff hist +10 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3000:30, 27 October 2016 diff hist +5 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:3000:30, 27 October 2016 diff hist +30 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2800:28, 27 October 2016 diff hist 0 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2700:27, 27 October 2016 diff hist 0 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2600:26, 27 October 2016 diff hist +168 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2200:22, 27 October 2016 diff hist +24 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2200:22, 27 October 2016 diff hist +57 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2100:21, 27 October 2016 diff hist −1 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:2000:20, 27 October 2016 diff hist +294 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:1500:15, 27 October 2016 diff hist −2 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:1400:14, 27 October 2016 diff hist +134 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:1200:12, 27 October 2016 diff hist +4 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:1100:11, 27 October 2016 diff hist +6 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:1000:10, 27 October 2016 diff hist +767 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:0400:04, 27 October 2016 diff hist +272 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 00:0000:00, 27 October 2016 diff hist +3 Assembly Hubs →Troubleshooting BLAT servers for your hub
26 October 2016
- 23:5923:59, 26 October 2016 diff hist +114 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5823:58, 26 October 2016 diff hist −32 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5823:58, 26 October 2016 diff hist −66 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5723:57, 26 October 2016 diff hist +22 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5623:56, 26 October 2016 diff hist +53 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5523:55, 26 October 2016 diff hist +2 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5523:55, 26 October 2016 diff hist +4 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5423:54, 26 October 2016 diff hist −1 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5423:54, 26 October 2016 diff hist +3 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5323:53, 26 October 2016 diff hist −6 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5323:53, 26 October 2016 diff hist +3 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5223:52, 26 October 2016 diff hist +2 Assembly Hubs →Troubleshooting BLAT servers for your hub
- 23:5123:51, 26 October 2016 diff hist +1,402 Assembly Hubs →Adding BLAT servers