User contributions for David da Silva Pires
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25 June 2021
- 19:3819:38, 25 June 2021 diff hist +142 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Changing from eboVir3 to tryCru32-CLBrenerEsmeraldoLike. current
18 June 2021
- 20:3020:30, 18 June 2021 diff hist +466 GBiB: From download to BLAT at assembly hubs →Preparing the data: Changing from eboVir3 to tryCru32-CLBrenerEsmeraldoLike.
11 June 2021
- 18:1618:16, 11 June 2021 diff hist +381 GBiB: From download to BLAT at assembly hubs →Creating a basic genomes.txt file: Adding a lot of fields (not so basic anymore ;-) and changing from eboVir3 to Trypanosoma cruzi.
- 15:2015:20, 11 June 2021 diff hist +2 m GBiB: From download to BLAT at assembly hubs →Assembly hub configuration: Just adjusting some spacing between sections.
- 15:1515:15, 11 June 2021 diff hist +48 GBiB: From download to BLAT at assembly hubs →Creating a basic hub.txt file: Changing from a virus to a generic assembly Hub.
- 15:0415:04, 11 June 2021 diff hist +218 GBiB: From download to BLAT at assembly hubs →Downloading the raw data: Changing from Ebola virus to Trypanosoma cruzi genome.
29 January 2020
- 15:5115:51, 29 January 2020 diff hist +23 GBiB: From download to BLAT at assembly hubs →GBiB installation: Using a wget flag to pass through certification verification.
- 15:4915:49, 29 January 2020 diff hist +72 GBiB: From download to BLAT at assembly hubs Adding command to set right permissions to access /usr/local/src/gbib
27 January 2020
- 19:2219:22, 27 January 2020 diff hist 0 m GBiB: From download to BLAT at assembly hubs →Introduction: Updating the tested Linux distribution.
2 December 2019
- 13:3713:37, 2 December 2019 diff hist +6 m GBiB: From download to BLAT at assembly hubs →Introduction: Updating the tested Linux distribution.
4 September 2018
- 19:2219:22, 4 September 2018 diff hist +47 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Including a warning about the presence of a '.' (dot) at a track name, which causes problems at mysql tables when configuring searchTrix.
20 June 2017
- 15:5315:53, 20 June 2017 diff hist −1 GBiB: From download to BLAT at assembly hubs →Introduction: Updating the Kubuntu version.
22 April 2017
- 22:0222:02, 22 April 2017 diff hist +1 m GBiB: From download to BLAT at assembly hubs →Basic HTML page: Tip: closing point.
- 22:0122:01, 22 April 2017 diff hist +141 GBiB: From download to BLAT at assembly hubs →Gap track: New subsection explaining how to create a basic HTML page for the description of the assembly hub.
20 April 2017
- 10:1810:18, 20 April 2017 diff hist +362 GBiB: From download to BLAT at assembly hubs →Gap track: Writing the trackDb.txt files.
10 April 2017
- 14:0314:03, 10 April 2017 diff hist +250 GBiB: From download to BLAT at assembly hubs →Gap track: Adapting the gap track input and output files to the new location of AGP file.
- 13:5013:50, 10 April 2017 diff hist +98 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Fixing the path for the sorted AGP file.
- 13:3713:37, 10 April 2017 diff hist −229 GBiB: From download to BLAT at assembly hubs Since the AGP file is used to construct both assembly and gap tracks, it is better to keep it in just one directory. I chose the genome directory.
- 13:0313:03, 10 April 2017 diff hist +366 GBiB: From download to BLAT at assembly hubs →Additional configuration: Initial configuration of the gap track.
- 12:4412:44, 10 April 2017 diff hist −410 GBiB: From download to BLAT at assembly hubs →Additional configuration: Removing data refering an incomplete description of a BIGBED track.