User contributions for David da Silva Pires
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1 June 2015
- 23:3823:38, 1 June 2015 diff hist +358 GBiB: From download to BLAT at assembly hubs →Preparing the data: Changing from relative to absolute path.
- 23:3323:33, 1 June 2015 diff hist +154 GBiB: From download to BLAT at assembly hubs Adapting the session "Preparing the data" to ebola data.
- 23:2223:22, 1 June 2015 diff hist +43 m GBiB: From download to BLAT at assembly hubs New session: "Creating a basic genomes.txt file".
29 May 2015
- 22:2722:27, 29 May 2015 diff hist +43 GBiB: From download to BLAT at assembly hubs Creating a subsession for hub.txt file.
- 22:2222:22, 29 May 2015 diff hist +48 GBiB: From download to BLAT at assembly hubs →Downloading the raw data: Fixing user, host and extension.
- 22:1622:16, 29 May 2015 diff hist +34 GBiB: From download to BLAT at assembly hubs Fixing color at ssh command.
- 10:1310:13, 29 May 2015 diff hist +1 GBiB: From download to BLAT at assembly hubs Moving the subsection "Dowloading the raw data" to the section "Assembly hub configuration".
- 09:2309:23, 29 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Preparing earlier the .2bit file in order to obtain the assembly track.
28 May 2015
- 23:2723:27, 28 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Moving information about assembly track to the correct place.
- 23:2223:22, 28 May 2015 diff hist +7 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Inclusion of "EOI" at trackDb.txt.
- 23:2123:21, 28 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Moving down information about the construction of an HTML page.
27 May 2015
- 00:3900:39, 27 May 2015 diff hist −129 GBiB: From download to BLAT at assembly hubs →Track hub configuration: A simpler version of trackDb.txt
- 00:3500:35, 27 May 2015 diff hist −222 GBiB: From download to BLAT at assembly hubs →Preparing the raw data: Simpler versions of hub.txt and genomes.txt.
26 May 2015
- 23:3123:31, 26 May 2015 diff hist −264 GBiB: From download to BLAT at assembly hubs →Preparing the raw data: We don't need to extract a fasta file from .2bit file anymore.
- 23:1423:14, 26 May 2015 diff hist +16 GBiB: From download to BLAT at assembly hubs →GBiB maintenance: It seems that even if we do an updateBrowser, a subsequent gbibAddTools still install some updates.
- 23:1023:10, 26 May 2015 diff hist −100 GBiB: From download to BLAT at assembly hubs →GBiB configuration: Eliminating "hub" as a shared folder.
- 23:0423:04, 26 May 2015 diff hist −297 GBiB: From download to BLAT at assembly hubs Simplifying the "Download the raw data" instructions.
22 May 2015
- 18:5518:55, 22 May 2015 diff hist +37 GBiB: From download to BLAT at assembly hubs Simplifying the configuration of the first track.
- 17:0517:05, 22 May 2015 diff hist +145 GBiB: From download to BLAT at assembly hubs We don't need to download the .2bit. Downloading fasta directly.
- 16:4416:44, 22 May 2015 diff hist +11 GBiB: From download to BLAT at assembly hubs Replacing S. mansoni with Ebola virus at genomes.txt.
- 16:2816:28, 22 May 2015 diff hist +155 m GBiB: From download to BLAT at assembly hubs Checking hub state with the command hubCheck.
- 16:1516:15, 22 May 2015 diff hist −3 m GBiB: From download to BLAT at assembly hubs Typo fix.
- 16:1416:14, 22 May 2015 diff hist +15 m GBiB: From download to BLAT at assembly hubs Removing unnecessary html extension.
- 16:0716:07, 22 May 2015 diff hist +91 m GBiB: From download to BLAT at assembly hubs Rearranging some paragraphs.
- 15:4415:44, 22 May 2015 diff hist +18 m GBiB: From download to BLAT at assembly hubs Typo fix. Another estimation to update time.
- 15:2615:26, 22 May 2015 diff hist +83 GBiB: From download to BLAT at assembly hubs Including command to install VirtualBox package.
- 15:0715:07, 22 May 2015 diff hist 0 m GBiB: From download to BLAT at assembly hubs Changing the place relative to GBiB box on download.
- 15:0315:03, 22 May 2015 diff hist +36 GBiB: From download to BLAT at assembly hubs Separating the download and the preparation of the raw data.
- 13:5213:52, 22 May 2015 diff hist +116 m GBiB: From download to BLAT at assembly hubs Fixing some folders names.
- 13:3913:39, 22 May 2015 diff hist +13 m GBiB: From download to BLAT at assembly hubs Replacing Gene Network by Virus Network.
19 May 2015
- 18:1518:15, 19 May 2015 diff hist +11 GBiB: From download to BLAT at assembly hubs Including "-verbose=1" option to bedToBigBed.
- 15:3115:31, 19 May 2015 diff hist +730 GBiB: From download to BLAT at assembly hubs Construction of the GC percent track.
- 13:3013:30, 19 May 2015 diff hist +1,212 GBiB: From download to BLAT at assembly hubs Construction of assembly and gap tracks.
- 12:5012:50, 19 May 2015 diff hist +456 GBiB: From download to BLAT at assembly hubs Building an AGP file from fasta using the hgFakeAgp command.
- 09:2409:24, 19 May 2015 diff hist +165 GBiB: From download to BLAT at assembly hubs Extracting fasta sequence from .2bit file.
- 00:5800:58, 19 May 2015 diff hist +690 GBiB: From download to BLAT at assembly hubs Using colors to show *who* should type *where*. Just the two first sections done.
- 00:4400:44, 19 May 2015 diff hist +74 GBiB: From download to BLAT at assembly hubs Warning about the uniqueness of a track name at trackDb.txt.
17 May 2015
- 15:0215:02, 17 May 2015 diff hist +52 GBiB: From download to BLAT at assembly hubs Adding the option "group" to trackDb.txt.
- 14:0814:08, 17 May 2015 diff hist +156 GBiB: From download to BLAT at assembly hubs Suggesting the inclusion of an image of the organism.
- 13:4013:40, 17 May 2015 diff hist +113 GBiB: From download to BLAT at assembly hubs Adding the new option "negateValues on" at trackDb.txt.
- 12:4912:49, 17 May 2015 diff hist +572 GBiB: From download to BLAT at assembly hubs A better custom track configuration and limitations to some values.
- 11:0711:07, 17 May 2015 diff hist +803 GBiB: From download to BLAT at assembly hubs Adding a track description page.
- 01:3601:36, 17 May 2015 diff hist +171 GBiB: From download to BLAT at assembly hubs A better custom track configuration
12 May 2015
- 10:1710:17, 12 May 2015 diff hist +583 GBiB: From download to BLAT at assembly hubs Setting gfServer for blat and transBlat at cron (/etc/rc.local) and switching from schMan2 to eboVir3.
11 May 2015
- 23:0223:02, 11 May 2015 diff hist −60 GBiB: From download to BLAT at assembly hubs Fixing the page description of the hub.
- 14:3514:35, 11 May 2015 diff hist +1,328 GBiB: From download to BLAT at assembly hubs Using the hubCheck command at other steps and creating an HTML page for the organism.
- 13:1413:14, 11 May 2015 diff hist 0 m GBiB: From download to BLAT at assembly hubs Tipo fix: firts ---> first.
- 13:1213:12, 11 May 2015 diff hist −134 GBiB: From download to BLAT at assembly hubs Changing hubPublicCheck to hubCheck, since we will not need to work with databases.
- 00:5200:52, 11 May 2015 diff hist +367 GBiB: From download to BLAT at assembly hubs Creating the HTML page description for the hub.
- 00:1800:18, 11 May 2015 diff hist 0 m GBiB: From download to BLAT at assembly hubs Tipo fix: longlabel ---> longLabel.
- 00:0600:06, 11 May 2015 diff hist 0 m GBiB: From download to BLAT at assembly hubs Tipo fix: shortlabel ---> shortLabel.
- 00:0000:00, 11 May 2015 diff hist −246 m GBiB: From download to BLAT at assembly hubs Changing the way we show "here documents" (<<) such that one can copy and paste them.
10 May 2015
- 23:5523:55, 10 May 2015 diff hist −49 m GBiB: From download to BLAT at assembly hubs Moving creation of folders to "Preparing raw data" section.
- 22:0122:01, 10 May 2015 diff hist +542 GBiB: From download to BLAT at assembly hubs First version of "Preparing the raw data" subsection. Using eboVir3. Minor corrections at "GBiB configuration" section.
- 21:1221:12, 10 May 2015 diff hist −58 GBiB: From download to BLAT at assembly hubs Removing the "Bidirectional" option on "Drag'n'Drop" because GBiB does not come with a CD-ROM drive in order to install guest additions.
- 20:4520:45, 10 May 2015 diff hist −259 m GBiB: From download to BLAT at assembly hubs Changing the way we show command lines: from " $>" to " $>".
- 20:3420:34, 10 May 2015 diff hist +658 GBiB: From download to BLAT at assembly hubs Refining information on section "GBiB installation".
- 14:1214:12, 10 May 2015 diff hist +5 m GBiB: From download to BLAT at assembly hubs Emphasizing a little more.
- 14:0914:09, 10 May 2015 diff hist +51 m GBiB: From download to BLAT at assembly hubs Augmenting one of the advantages.
- 14:0314:03, 10 May 2015 diff hist +1,105 GBiB: From download to BLAT at assembly hubs First version of "Introduction" section.
8 May 2015
- 19:0319:03, 8 May 2015 diff hist −2 m GBiB: From download to BLAT at assembly hubs should ---> must
- 19:0219:02, 8 May 2015 diff hist +102 GBiB: From download to BLAT at assembly hubs Inclusion of rules for hub.txt fields.
7 May 2015
- 12:5912:59, 7 May 2015 diff hist −1 m GBiB: From download to BLAT at assembly hubs Typo correction: whith ---> with.
6 May 2015
- 20:2420:24, 6 May 2015 diff hist +93 GBiB: From download to BLAT at assembly hubs First version of "GBiB maintenance" section.
- 20:1420:14, 6 May 2015 diff hist +192 GBiB: From download to BLAT at assembly hubs First version of "Custom track configuration" section.
- 20:0120:01, 6 May 2015 diff hist +422 GBiB: From download to BLAT at assembly hubs First version of "Blat configuration" section.
- 19:4019:40, 6 May 2015 diff hist +5,183 GBiB: From download to BLAT at assembly hubs First version of "Track hub configuration" section.
- 14:0714:07, 6 May 2015 diff hist +1,087 GBiB: From download to BLAT at assembly hubs Fisrt version of "GBiB Configuration" section.
- 13:4513:45, 6 May 2015 diff hist +359 GBiB: From download to BLAT at assembly hubs No edit summary
- 11:1111:11, 6 May 2015 diff hist +331 GBiB: From download to BLAT at assembly hubs No edit summary
- 01:5501:55, 6 May 2015 diff hist +102 N Category:GBiB Created page with "Information relative to installation, configuration and maintenance of GBiB (Genome Browser in a Box)." current
- 01:5001:50, 6 May 2015 diff hist +969 N GBiB: From download to BLAT at assembly hubs Created page with "== GBiB installation == * Create a folder at your machine to place the installation files: $> sudo mkdir /usr/local/src/gbib == GBiB Configuration == * Click at "Setting..."
- 01:1201:12, 6 May 2015 diff hist +89 Main Page No edit summary
