User contributions for David da Silva Pires
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29 January 2020
- 15:5115:51, 29 January 2020 diff hist +23 GBiB: From download to BLAT at assembly hubs →GBiB installation: Using a wget flag to pass through certification verification.
- 15:4915:49, 29 January 2020 diff hist +72 GBiB: From download to BLAT at assembly hubs Adding command to set right permissions to access /usr/local/src/gbib
27 January 2020
- 19:2219:22, 27 January 2020 diff hist 0 m GBiB: From download to BLAT at assembly hubs →Introduction: Updating the tested Linux distribution.
2 December 2019
- 13:3713:37, 2 December 2019 diff hist +6 m GBiB: From download to BLAT at assembly hubs →Introduction: Updating the tested Linux distribution.
4 September 2018
- 19:2219:22, 4 September 2018 diff hist +47 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Including a warning about the presence of a '.' (dot) at a track name, which causes problems at mysql tables when configuring searchTrix.
20 June 2017
- 15:5315:53, 20 June 2017 diff hist −1 GBiB: From download to BLAT at assembly hubs →Introduction: Updating the Kubuntu version.
22 April 2017
- 22:0222:02, 22 April 2017 diff hist +1 m GBiB: From download to BLAT at assembly hubs →Basic HTML page: Tip: closing point.
- 22:0122:01, 22 April 2017 diff hist +141 GBiB: From download to BLAT at assembly hubs →Gap track: New subsection explaining how to create a basic HTML page for the description of the assembly hub.
20 April 2017
- 10:1810:18, 20 April 2017 diff hist +362 GBiB: From download to BLAT at assembly hubs →Gap track: Writing the trackDb.txt files.
10 April 2017
- 14:0314:03, 10 April 2017 diff hist +250 GBiB: From download to BLAT at assembly hubs →Gap track: Adapting the gap track input and output files to the new location of AGP file.
- 13:5013:50, 10 April 2017 diff hist +98 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Fixing the path for the sorted AGP file.
- 13:3713:37, 10 April 2017 diff hist −229 GBiB: From download to BLAT at assembly hubs Since the AGP file is used to construct both assembly and gap tracks, it is better to keep it in just one directory. I chose the genome directory.
- 13:0313:03, 10 April 2017 diff hist +366 GBiB: From download to BLAT at assembly hubs →Additional configuration: Initial configuration of the gap track.
- 12:4412:44, 10 April 2017 diff hist −410 GBiB: From download to BLAT at assembly hubs →Additional configuration: Removing data refering an incomplete description of a BIGBED track.
- 12:3712:37, 10 April 2017 diff hist −15 GBiB: From download to BLAT at assembly hubs Making a double check with hubCheck: file and URL.
- 12:1712:17, 10 April 2017 diff hist −304 GBiB: From download to BLAT at assembly hubs Removing a call for the hubCheck command and placing the explanation in a better place.
- 12:0112:01, 10 April 2017 diff hist −70 GBiB: From download to BLAT at assembly hubs Dealing with genomes that have chromosomes names too long.
- 10:2310:23, 10 April 2017 diff hist +160 GBiB: From download to BLAT at assembly hubs Dealing with genomes that have all nucleotides as lowecase letters.
7 April 2017
- 16:5316:53, 7 April 2017 diff hist +375 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Including the assembly track configuration in the main trackDb.txt.
- 16:4616:46, 7 April 2017 diff hist +122 GBiB: From download to BLAT at assembly hubs Checking AGP and FASTA file in the right place.