User contributions for Galt
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31 January 2023
- 03:2803:28, 31 January 2023 diff hist +2 Parasol job control system →Testing parasol jobs current
- 02:2602:26, 31 January 2023 diff hist +2 Parasol job control system →Testing parasol jobs
27 January 2023
26 January 2023
28 April 2022
- 20:1120:11, 28 April 2022 diff hist −144 Sql injection protection Updated for version 2 extensions. Frag functions are removed as unneeded since they were difficult to use correctly. Now we have a better approach for passing SQL clauses. current
- 19:5119:51, 28 April 2022 diff hist −1,738 Sql-injection safe functions No edit summary current
29 April 2021
- 09:3609:36, 29 April 2021 diff hist +920 Getting Started With Git →Setting Up Your Own Personal Git Kent Repository current
26 April 2021
- 19:0319:03, 26 April 2021 diff hist −4 File too large checked in No edit summary current
- 07:4407:44, 26 April 2021 diff hist +134 File too large checked in No edit summary
- 07:4107:41, 26 April 2021 diff hist +27 File too large checked in No edit summary
- 07:3507:35, 26 April 2021 diff hist −101 File too large checked in No edit summary
- 07:3207:32, 26 April 2021 diff hist −420 File too large checked in No edit summary
25 April 2021
- 09:3209:32, 25 April 2021 diff hist +7 File too large checked in No edit summary
- 09:2509:25, 25 April 2021 diff hist −1 File too large checked in No edit summary
- 09:2409:24, 25 April 2021 diff hist +1 File too large checked in No edit summary
- 09:2309:23, 25 April 2021 diff hist +5 File too large checked in No edit summary
- 09:1909:19, 25 April 2021 diff hist +3 File too large checked in No edit summary
- 09:1009:10, 25 April 2021 diff hist −4 File too large checked in No edit summary
- 09:0609:06, 25 April 2021 diff hist −7 File too large checked in No edit summary
- 09:0409:04, 25 April 2021 diff hist +85 File too large checked in No edit summary
- 08:5508:55, 25 April 2021 diff hist +5 File too large checked in No edit summary
- 08:4908:49, 25 April 2021 diff hist +27 File too large checked in No edit summary
- 08:4508:45, 25 April 2021 diff hist +75 File too large checked in No edit summary
- 08:4108:41, 25 April 2021 diff hist +1 File too large checked in No edit summary
- 08:3608:36, 25 April 2021 diff hist +146 File too large checked in No edit summary
- 08:2808:28, 25 April 2021 diff hist +429 File too large checked in No edit summary
- 08:1408:14, 25 April 2021 diff hist +1,852 File too large checked in No edit summary
- 02:2402:24, 25 April 2021 diff hist +2 File too large checked in No edit summary
- 02:2002:20, 25 April 2021 diff hist −5 File too large checked in No edit summary
- 02:1802:18, 25 April 2021 diff hist +536 File too large checked in No edit summary
- 01:5501:55, 25 April 2021 diff hist +21 File too large checked in No edit summary
- 01:4901:49, 25 April 2021 diff hist +78 File too large checked in No edit summary
- 01:4401:44, 25 April 2021 diff hist +2 File too large checked in No edit summary
- 01:4401:44, 25 April 2021 diff hist +424 File too large checked in No edit summary
- 01:3801:38, 25 April 2021 diff hist +1 File too large checked in No edit summary
- 01:1101:11, 25 April 2021 diff hist +3,522 File too large checked in No edit summary
- 00:2900:29, 25 April 2021 diff hist +1 File too large checked in No edit summary
- 00:2800:28, 25 April 2021 diff hist +3,061 File too large checked in No edit summary
24 April 2021
- 23:2023:20, 24 April 2021 diff hist +93 File too large checked in No edit summary
- 23:1423:14, 24 April 2021 diff hist +142 File too large checked in No edit summary
- 23:1123:11, 24 April 2021 diff hist +18 File too large checked in No edit summary
- 23:0823:08, 24 April 2021 diff hist −41 File too large checked in No edit summary
- 22:3122:31, 24 April 2021 diff hist +1,375 N File too large checked in Created page with "FILE TOO LARGE CHECKED IN When I do git push I see this error: Exceeds file size limit 2200000. WHY THE ERROR OCCURS The kent repo has a limit (currently 2200000) on fil..."
15 August 2020
- 06:4006:40, 15 August 2020 diff hist −1 How Liftover Works No edit summary current
- 06:3306:33, 15 August 2020 diff hist +6,242 N How Liftover Works Created page with " 2020-08-14 I was just looking at the liftOver code, and testing it to answer user questions, some useful notes can be had here for people wondering how to use it or how it w..."
1 May 2019
- 19:4719:47, 1 May 2019 diff hist +72 Blat All Genomes No edit summary current
- 19:4119:41, 1 May 2019 diff hist +7 Blat All Genomes No edit summary
- 19:3619:36, 1 May 2019 diff hist +12 Blat All Genomes No edit summary
- 19:3519:35, 1 May 2019 diff hist +25 Blat All Genomes No edit summary
- 19:3319:33, 1 May 2019 diff hist +5 Blat All Genomes No edit summary
- 19:3219:32, 1 May 2019 diff hist +12 Blat All Genomes No edit summary
- 19:3219:32, 1 May 2019 diff hist +11 Blat All Genomes No edit summary
- 19:2919:29, 1 May 2019 diff hist +486 Blat All Genomes No edit summary
- 19:1419:14, 1 May 2019 diff hist +4,697 N Blat All Genomes Created page with " Background: When we use Blat All Genomes feature on hgBlat, it simultaneously searches in parallel with multiple threads the query and possibly the reverse-complemented quer..."
23 March 2019
- 05:5105:51, 23 March 2019 diff hist −1 Getting Started With Git →Figuring Our What Commits Are Already Pushed To Shared Repo
- 05:5005:50, 23 March 2019 diff hist +1 Getting Started With Git →Figuring Our What Commits Are Already Pushed To Shared Repo
- 05:4905:49, 23 March 2019 diff hist +1,769 Getting Started With Git adding a section on finding which commits belong to the shared history central repo and should not be modified.
1 November 2018
- 08:4908:49, 1 November 2018 diff hist −353 Getting Started With Git →Setting Up Your Own Personal Git Kent Repository
- 08:3708:37, 1 November 2018 diff hist +24 Getting Started With Git →Setting Up Your Own Personal Git Kent Repository
- 08:3308:33, 1 November 2018 diff hist +239 Getting Started With Git →Setting Up Your Own Personal Git Kent Repository
19 September 2018
- 07:1407:14, 19 September 2018 diff hist +69 BLAT-Strands-And-Frames No edit summary current
- 07:1107:11, 19 September 2018 diff hist +3 BLAT-Strands-And-Frames No edit summary
- 07:1107:11, 19 September 2018 diff hist +14 BLAT-Strands-And-Frames No edit summary
- 07:1007:10, 19 September 2018 diff hist +31 BLAT-Strands-And-Frames No edit summary
- 07:0707:07, 19 September 2018 diff hist +99 BLAT-Strands-And-Frames No edit summary
- 07:0507:05, 19 September 2018 diff hist +5 BLAT-Strands-And-Frames No edit summary
- 07:0307:03, 19 September 2018 diff hist 0 BLAT-Strands-And-Frames No edit summary
- 07:0107:01, 19 September 2018 diff hist +16 BLAT-Strands-And-Frames No edit summary
- 06:4006:40, 19 September 2018 diff hist +26 BLAT-Strands-And-Frames No edit summary
- 06:3606:36, 19 September 2018 diff hist +22 BLAT-Strands-And-Frames No edit summary
- 06:3506:35, 19 September 2018 diff hist +12 BLAT-Strands-And-Frames No edit summary
- 06:3506:35, 19 September 2018 diff hist +8 BLAT-Strands-And-Frames No edit summary
- 06:3406:34, 19 September 2018 diff hist +2 BLAT-Strands-And-Frames No edit summary
- 06:3306:33, 19 September 2018 diff hist +11 BLAT-Strands-And-Frames No edit summary
- 06:3306:33, 19 September 2018 diff hist +2 BLAT-Strands-And-Frames No edit summary
- 06:3206:32, 19 September 2018 diff hist +2,772 BLAT-Strands-And-Frames No edit summary
- 06:1806:18, 19 September 2018 diff hist +8 BLAT-Strands-And-Frames No edit summary
- 06:1806:18, 19 September 2018 diff hist +8 BLAT-Strands-And-Frames No edit summary
- 06:1706:17, 19 September 2018 diff hist +117 BLAT-Strands-And-Frames No edit summary
- 06:1506:15, 19 September 2018 diff hist +429 BLAT-Strands-And-Frames No edit summary
- 05:4805:48, 19 September 2018 diff hist −79 BLAT-Strands-And-Frames No edit summary
- 05:3505:35, 19 September 2018 diff hist +1,587 N BLAT-Strands-And-Frames Some initial notes about blat search types and strands and frames
1 September 2018
- 08:1408:14, 1 September 2018 diff hist −5 DoBlastzChainNet.pl genome-source fixes
- 08:1308:13, 1 September 2018 diff hist −13 Getting Started With Git genome-source fixes
- 08:1108:11, 1 September 2018 diff hist −6 DoSameSpeciesLiftOver.pl genome-source fixes
- 08:0908:09, 1 September 2018 diff hist +2 RepeatMasker changed cse to soe current
- 08:0708:07, 1 September 2018 diff hist 0 Pegasoferae? changed cse to soe current
- 08:0308:03, 1 September 2018 diff hist 0 Talk:Minimal Browser Installation changed cse to soe current
- 08:0208:02, 1 September 2018 diff hist 0 Talk:Same species lift over construction changed cse to soe current
- 08:0208:02, 1 September 2018 diff hist 0 GBiB: From download to BLAT at assembly hubs changed cse to soe
- 08:0108:01, 1 September 2018 diff hist 0 KNETFILE HOOKS changed cse to soe current
- 08:0008:00, 1 September 2018 diff hist 0 The source tree No edit summary current
- 08:0008:00, 1 September 2018 diff hist 0 Obscure But Useful Browser Features changed cse to soe current
- 07:5907:59, 1 September 2018 diff hist −6 Parasol job control system changed cse to soe and genome-source fixes
- 07:5807:58, 1 September 2018 diff hist 0 Gene id conversion changed cse to soe current
- 07:5607:56, 1 September 2018 diff hist 0 Unix environment changed cse to soe current
- 07:5607:56, 1 September 2018 diff hist 0 Fetch fasta sequence for identifier list changed cse to soe current
- 07:5407:54, 1 September 2018 diff hist 0 Updating a Genome Browser Mirror changed cse to soe current
- 07:5407:54, 1 September 2018 diff hist 0 Genes in gtf or gff format changed cse to soe
- 07:5307:53, 1 September 2018 diff hist +1 Build Environment Variables changed cse to soe current
- 07:5207:52, 1 September 2018 diff hist 0 Talk:Browser Installation changed cse to soe current
- 07:5107:51, 1 September 2018 diff hist 0 BoG2013VariationPoster changed cse to soe current
- 07:4107:41, 1 September 2018 diff hist 0 File:BlatBot pl.txt Galt uploaded a new version of File:BlatBot pl.txt current
- 07:3507:35, 1 September 2018 diff hist 0 ABRF2010 Tutorial changed cse to soe
- 07:3307:33, 1 September 2018 diff hist 0 Download All Genomes changed cse to soe current
- 07:3207:32, 1 September 2018 diff hist −13 Source tree compilation on Debian/Ubuntu changed cse to soe and genome-source fixes current
- 07:3007:30, 1 September 2018 diff hist 0 Ucsc changed cse to soe current
- 07:3007:30, 1 September 2018 diff hist +1 Learn about the Browser changed cse to soe current
- 07:2807:28, 1 September 2018 diff hist 0 CVS to Git Migration changed cse to soe
- 07:2707:27, 1 September 2018 diff hist 0 Using hgWiggle without a database changed cse to soe current
- 07:2607:26, 1 September 2018 diff hist 0 Genes by any other name changed cse to soe current
- 07:2507:25, 1 September 2018 diff hist 0 Programmatic access to the Genome Browser changed cse to soe and genome-source fixes current
- 07:2407:24, 1 September 2018 diff hist −5 Lastz tuning procedure changed cse to soe and genome-source fixes current
- 07:2207:22, 1 September 2018 diff hist 0 CVS kent source tree control changed cse to soe
- 07:1907:19, 1 September 2018 diff hist 0 User talk:Hiram changed cse to soe
- 07:1807:18, 1 September 2018 diff hist 0 Cluster Jobs changed cse to soe current
- 07:1607:16, 1 September 2018 diff hist 0 User:Hiram changed cse to soe current
- 07:1407:14, 1 September 2018 diff hist +2 Building a new genome database changed cse to soe and genome-source fixes
- 07:1007:10, 1 September 2018 diff hist 0 Browser Mirrors changed cse to soe current
- 07:1007:10, 1 September 2018 diff hist −7 Whole genome alignment howto changed cse to soe and genome-source fixes
- 06:5806:58, 1 September 2018 diff hist 0 Starting in David's group changed cse to soe current
- 06:5706:57, 1 September 2018 diff hist −132 Browser Installation changed cse to soe and genome-source fixes
- 06:4806:48, 1 September 2018 diff hist +4 Minimal Browser Installation changed cse to soe and genome-source fixes current
28 August 2017
- 23:3623:36, 28 August 2017 diff hist 0 Minimal Steps For LiftOver No edit summary
14 June 2017
- 18:3418:34, 14 June 2017 diff hist 0 CGI functions →phyloGif current
- 18:3218:32, 14 June 2017 diff hist 0 Phylogenetic Tree No edit summary
19 September 2016
- 19:5919:59, 19 September 2016 diff hist +115 Git pull: what happens when and why? No edit summary current
31 August 2016
- 20:4120:41, 31 August 2016 diff hist +6 Git pull: what happens when and why? →git merge --squash
- 20:2220:22, 31 August 2016 diff hist +6 Git pull: what happens when and why? →git merge --squash
- 20:2020:20, 31 August 2016 diff hist −28 Git pull: what happens when and why? No edit summary
- 20:1920:19, 31 August 2016 diff hist +18 Git pull: what happens when and why? →git merge --squash
- 20:1820:18, 31 August 2016 diff hist +1 Git pull: what happens when and why? →git pull --rebase
- 20:1820:18, 31 August 2016 diff hist +105 Git pull: what happens when and why? No edit summary
- 20:0820:08, 31 August 2016 diff hist +3,777 Git pull: what happens when and why? No edit summary
- 05:2105:21, 31 August 2016 diff hist +6 Git status during merge conflict No edit summary current
- 05:1905:19, 31 August 2016 diff hist +1 Git status during merge conflict No edit summary
- 04:5004:50, 31 August 2016 diff hist +6 Git status during merge conflict No edit summary
- 01:3601:36, 31 August 2016 diff hist +174 Git status during merge conflict No edit summary
- 01:3401:34, 31 August 2016 diff hist +4 Git status during merge conflict No edit summary
- 01:3301:33, 31 August 2016 diff hist +2,248 Git status during merge conflict No edit summary
- 01:1401:14, 31 August 2016 diff hist +58 Git status during merge conflict No edit summary
- 01:1101:11, 31 August 2016 diff hist +583 N Git status during merge conflict Created page with " Running git status during a merge-conflict can often show a scarily-large number of files. These represent the work of other people in the group. If it has been several days sin..."
- 00:5800:58, 31 August 2016 diff hist −3 Git pull: what happens when and why? No edit summary
- 00:5700:57, 31 August 2016 diff hist +4 Git pull: what happens when and why? No edit summary
- 00:5700:57, 31 August 2016 diff hist +36 Git pull: what happens when and why? No edit summary
- 00:5500:55, 31 August 2016 diff hist +2,970 N Git pull: what happens when and why? Created page with "What happens when you git pull? Git pull does a fetch and then a merge. git fetch updates your repo bringing in new git repo objects, updates origin/master. It does not change yo..."
25 June 2016
- 00:2000:20, 25 June 2016 diff hist +6 Presentations →2016
- 00:1900:19, 25 June 2016 diff hist +37 Presentations →2016
- 00:1700:17, 25 June 2016 diff hist +119 N File:Multi-region-BoG2016.pdf Poster on Multi-region (exon-mostly) new feature of the UCSC Genome Browser for the Biology of Genomes 2016 conference. current
- 00:0700:07, 25 June 2016 diff hist +78 Presentations →2016
4 March 2016
- 02:5302:53, 4 March 2016 diff hist +13 Sql injection protection →Safe use of an explicit NOSQLINJ tag in a simple SQL literal
- 02:5302:53, 4 March 2016 diff hist +15 Sql injection protection No edit summary
- 02:5102:51, 4 March 2016 diff hist +191 Sql injection protection We care changing to using the NOSQLINJ #define instead of just inserting the tag manually inside the string.
5 October 2015
- 23:4123:41, 5 October 2015 diff hist +20 Working with Git →Fixing un-wanted large file that was accidentally committed
- 23:3923:39, 5 October 2015 diff hist +1,329 Working with Git No edit summary
23 September 2015
- 23:4223:42, 23 September 2015 diff hist +1 Cluster Jobs No edit summary
- 23:4223:42, 23 September 2015 diff hist +82 Cluster Jobs No edit summary
19 September 2014
- 22:0422:04, 19 September 2014 diff hist +2 Presentations →2014
- 22:0222:02, 19 September 2014 diff hist +83 N File:GenomeInformatics2014Poster.pdf Poster made by Galt Barber for Genome Informatics 2014 conference in Cambridge, UK. current
- 21:5921:59, 19 September 2014 diff hist +138 Presentations →2014
25 March 2014
- 15:4515:45, 25 March 2014 diff hist +80 ThreeStateTrackDb No edit summary
13 February 2014
- 20:2820:28, 13 February 2014 diff hist −16 Visualizing Coordinates No edit summary current
- 20:2720:27, 13 February 2014 diff hist +11 Visualizing Coordinates No edit summary
- 20:2520:25, 13 February 2014 diff hist +22 Visualizing Coordinates No edit summary
- 20:2420:24, 13 February 2014 diff hist +2,692 N Visualizing Coordinates Created page with "Regarding strand coordinates, there are generally two ways in which this can be done: #1. Specify coordinate on positive strand, and then after the fact, note whether it is actu..."
16 August 2013
- 18:4618:46, 16 August 2013 diff hist −8 Getting Started With Git →Setting Up Your Own Personal Git Kent Repository
- 18:4518:45, 16 August 2013 diff hist +121 Getting Started With Git No edit summary