User contributions for Hiram
From genomewiki
Jump to navigationJump to search
12 July 2018
- 16:5116:51, 12 July 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
11 July 2018
- 21:4621:46, 11 July 2018 diff hist 0 File:OpenStackParaHubSetup.sh.txt Hiram uploaded a new version of File:OpenStackParaHubSetup.sh.txt
- 17:4217:42, 11 July 2018 diff hist 0 File:OpenStackParaNodeSetup.sh.template.txt Hiram uploaded a new version of File:OpenStackParaNodeSetup.sh.template.txt
- 17:2817:28, 11 July 2018 diff hist 0 File:OpenStackParaHubSetup.sh.txt Hiram uploaded a new version of File:OpenStackParaHubSetup.sh.txt
- 16:5116:51, 11 July 2018 diff hist 0 File:Hg19.grcIncidentDb.bb Hiram uploaded a new version of File:Hg19.grcIncidentDb.bb
- 16:5116:51, 11 July 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
30 June 2018
- 16:5216:52, 30 June 2018 diff hist 0 File:Hg19.grcIncidentDb.bb Hiram uploaded a new version of File:Hg19.grcIncidentDb.bb
- 16:5216:52, 30 June 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
29 June 2018
- 16:5216:52, 29 June 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
- 00:3100:31, 29 June 2018 diff hist +53 File:NodeReport.sh.txt add category tags
- 00:2900:29, 29 June 2018 diff hist 0 File:NodeReport.sh.txt Hiram uploaded a new version of File:NodeReport.sh.txt
28 June 2018
- 17:3517:35, 28 June 2018 diff hist +53 m Open Stack Parasol Installation add category tags current
- 16:5216:52, 28 June 2018 diff hist 0 File:Hg19.grcIncidentDb.bb Hiram uploaded a new version of File:Hg19.grcIncidentDb.bb
- 16:5216:52, 28 June 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
27 June 2018
- 16:5216:52, 27 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 27 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
24 June 2018
- 16:5216:52, 24 June 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
23 June 2018
- 16:5216:52, 23 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
22 June 2018
- 16:5916:59, 22 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5916:59, 22 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
21 June 2018
- 16:5216:52, 21 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 21 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
20 June 2018
- 16:5216:52, 20 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 20 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
19 June 2018
- 16:5216:52, 19 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 19 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
16 June 2018
- 16:5216:52, 16 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 16 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
- 16:5216:52, 16 June 2018 diff hist 0 File:Hg19.grcIncidentDb.bb Hiram uploaded a new version of File:Hg19.grcIncidentDb.bb
- 16:5216:52, 16 June 2018 diff hist 0 File:Hg38.grcIncidentDb.bb Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
15 June 2018
- 23:0223:02, 15 June 2018 diff hist +202 UCSC Multiple Alignments add mouse lemur micMur3 3-way alignment
- 23:0123:01, 15 June 2018 diff hist +2,715 N MicMur3 3-way conservation lastz parameters initial contents current
- 23:0023:00, 15 June 2018 diff hist +3,643 N MicMur3 3-way Genome size statistics initial contents current
- 23:0023:00, 15 June 2018 diff hist +2,324 N MicMur3 3-way conservation alignment initial contents current
- 16:5216:52, 15 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 15 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
12 June 2018
- 17:4217:42, 12 June 2018 diff hist +53 Lastz DEF file parameters add category tags current
- 17:4117:41, 12 June 2018 diff hist +2,304 N Lastz DEF file parameters Created page with "Adjusting SEQ_LAP, SEQ_CHUNK and SEQ_LIMIT parameters for the lastz/chain/net pipeline. The goal of adjusting these parameters is to obtain a reasonable number of cluster job..."
- 17:2317:23, 12 June 2018 diff hist +47 DoBlastzChainNet.pl outlink to discussion of DEF file parameter adjustment
8 June 2018
- 16:5216:52, 8 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 8 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
7 June 2018
- 16:5216:52, 7 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 7 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
6 June 2018
- 16:5216:52, 6 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 6 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
5 June 2018
- 16:5216:52, 5 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 5 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
2 June 2018
- 16:5216:52, 2 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 2 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
1 June 2018
- 16:5216:52, 1 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 1 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
31 May 2018
- 16:5216:52, 31 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 31 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
25 May 2018
- 16:5316:53, 25 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5316:53, 25 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
- 13:4413:44, 25 May 2018 diff hist +118 Nm User:Mingfu Wu Creating user page for new user. current
18 May 2018
- 16:5316:53, 18 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5316:53, 18 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
11 May 2018
- 16:5316:53, 11 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
4 May 2018
- 16:3316:33, 4 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 4 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
3 May 2018
- 16:3316:33, 3 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 3 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
2 May 2018
- 16:3316:33, 2 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 2 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
28 April 2018
- 17:5017:50, 28 April 2018 diff hist +53 File:SizeVsTime.png adding category tags current
- 17:4917:49, 28 April 2018 diff hist +53 File:LastzProcessingTimeHistogram.png adding category tags current
- 17:3017:30, 28 April 2018 diff hist +1 m Cluster Jobs →Sick batch
- 17:2617:26, 28 April 2018 diff hist +103 Parasol job control system add pointer to cluster jobs guidelines
- 17:1617:16, 28 April 2018 diff hist +110 DoBlastzChainNet.pl →Parasol Job Control System
- 17:1017:10, 28 April 2018 diff hist +69 DoBlastzChainNet.pl →Compute resources
- 17:0917:09, 28 April 2018 diff hist +303 N File:LastzProcessingTimeHistogram.png lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c...
- 17:0517:05, 28 April 2018 diff hist +129 File:SizeVsTime.png No edit summary
- 17:0417:04, 28 April 2018 diff hist +537 DoBlastzChainNet.pl add compute resources
27 April 2018
- 23:1323:13, 27 April 2018 diff hist +213 N File:SizeVsTime.png lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days
26 April 2018
- 15:2915:29, 26 April 2018 diff hist +374 LiftOver Howto added note about the scripts now available current
- 15:2015:20, 26 April 2018 diff hist 0 Whole genome alignment howto →2018 UPDATE NOTE
- 15:2015:20, 26 April 2018 diff hist 0 Whole genome alignment howto corrected doBlastzChainNet.pl
- 15:1815:18, 26 April 2018 diff hist 0 Minimal Steps For LiftOver corrected doBlastzChainNet.pl current
- 15:1715:17, 26 April 2018 diff hist +33 N DoChainNetBlastz.pl Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect current
- 15:1715:17, 26 April 2018 diff hist 0 m DoBlastzChainNet.pl Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect
- 15:1415:14, 26 April 2018 diff hist −1 DoBlastzChainNet.pl corrected command
- 15:1315:13, 26 April 2018 diff hist +374 Minimal Steps For LiftOver add redirect note to completed scripts
- 15:0615:06, 26 April 2018 diff hist +53 Same species lift over construction add category tags current
- 15:0515:05, 26 April 2018 diff hist +326 Same species lift over construction adding note to see new page for this procedure
- 00:2200:22, 26 April 2018 diff hist +24 DoSameSpeciesLiftOver.pl capture script output in do.log
- 00:2000:20, 26 April 2018 diff hist +2,681 DoSameSpeciesLiftOver.pl show result files, scripts used and cluster job run times
25 April 2018
- 22:4122:41, 25 April 2018 diff hist +767 DoSameSpeciesLiftOver.pl running the command
- 22:3122:31, 25 April 2018 diff hist +40 DoSameSpeciesLiftOver.pl add NCBI assembly link
- 22:3022:30, 25 April 2018 diff hist +120 DoSameSpeciesLiftOver.pl note about bin/blat
- 22:2822:28, 25 April 2018 diff hist −252 DoSameSpeciesLiftOver.pl no need to mention lastz here
- 22:2722:27, 25 April 2018 diff hist +135 DoSameSpeciesLiftOver.pl adding kent informatics
- 21:4821:48, 25 April 2018 diff hist +1,483 DoSameSpeciesLiftOver.pl ooc file construction
- 21:1521:15, 25 April 2018 diff hist +2,142 DoSameSpeciesLiftOver.pl Obtain genome sequences and working directories
- 20:3120:31, 25 April 2018 diff hist +53 DoSameSpeciesLiftOver.pl add category tags
- 20:3020:30, 25 April 2018 diff hist +3,385 N DoSameSpeciesLiftOver.pl initial contents copied from doBlastzChainNet.pl
- 16:0816:08, 25 April 2018 diff hist +173 Parasol job control system add licensing
- 16:0716:07, 25 April 2018 diff hist +173 DoBlastzChainNet.pl add licensing
23 April 2018
- 16:3316:33, 23 April 2018 diff hist +99 Nm User:Bwolford Creating user page for new user. current
19 April 2018
- 16:3316:33, 19 April 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb