User contributions for Marygoldman

11 August 2010

• 17:2217:22, 11 August 2010 diff hist −46‎ Working with Git ‎ →‎Fixing un-wanted changes
• 17:2217:22, 11 August 2010 diff hist +17‎ Working with Git ‎ →‎Fixing un-wanted changes
• 17:1617:16, 11 August 2010 diff hist −2‎ Working with Git ‎ →‎'git commit -m "some message" fileName(s)'
• 17:1417:14, 11 August 2010 diff hist +23‎ Working with Git ‎ →‎Terms that can refer to multiple things
• 17:1317:13, 11 August 2010 diff hist −35‎ Working with Git ‎ →‎'git push'
• 17:1117:11, 11 August 2010 diff hist +9‎ Working with Git ‎ →‎Other good things to know
• 16:5216:52, 11 August 2010 diff hist +6‎ Working with Git ‎ →‎Other good things to know
• 16:4816:48, 11 August 2010 diff hist −2‎ Working with Git ‎ →‎'git log [path/fileName]': typo
• 16:4816:48, 11 August 2010 diff hist +21‎ Working with Git ‎ →‎Other good things to know
• 16:4616:46, 11 August 2010 diff hist +45‎ Working with Git ‎ →‎'git log [path/fileName]'
• 16:4116:41, 11 August 2010 diff hist +25‎ Working with Git ‎ →‎Fixing un-wanted changes
• 16:4016:40, 11 August 2010 diff hist +31‎ m Working with Git ‎ formatting: making the command names smaller
• 16:3716:37, 11 August 2010 diff hist +335‎ Working with Git ‎ moving warning message
• 16:2516:25, 11 August 2010 diff hist −9‎ Working with Git ‎ →‎'git pull'
• 16:2116:21, 11 August 2010 diff hist 0‎ m Working with Git ‎ moving git blame into better parent category
• 16:1716:17, 11 August 2010 diff hist −23‎ Working with Git ‎ →‎'git pull'
• 16:1616:16, 11 August 2010 diff hist +93‎ Working with Git ‎ →‎'git rm fileName'
• 16:1516:15, 11 August 2010 diff hist −101‎ Working with Git ‎ →‎'git add fileName'
• 01:0701:07, 11 August 2010 diff hist −96‎ Working with Git ‎ little edits plus making the commit-ID-interchangeable-with-HEAD thing at the end

10 August 2010

• 22:2222:22, 10 August 2010 diff hist +243‎ m Working with Git ‎ editing git fetch, merge and stash
• 22:1322:13, 10 August 2010 diff hist +2‎ Working with Git ‎ →‎Useful resources
• 22:1222:12, 10 August 2010 diff hist +182‎ m Working with Git ‎ adding useful resources
• 22:0722:07, 10 August 2010 diff hist −190‎ m Working with Git ‎No edit summary
• 22:0422:04, 10 August 2010 diff hist +9,388‎ N Working with Git ‎ New page: ==Git structure== ===Definitions=== central repository – The main repository we all share. This is where we push files for everyone to use. Contains a history of everyone’s commits t...
• 17:4217:42, 10 August 2010 diff hist +1‎ m Providing remote audio for a meeting ‎ missing parenthesis

29 July 2010

• 20:5120:51, 29 July 2010 diff hist +3‎ Replacing old tables with new ones ‎ accidentially reference hgwdev rather than hgwbeta
• 00:0300:03, 29 July 2010 diff hist +2,025‎ N Providing remote audio for a meeting ‎ adding page

28 July 2010

• 16:5916:59, 28 July 2010 diff hist +61‎ m New Assembly Release Process Details ‎ added step about running doGenbankTests

26 July 2010

• 17:5717:57, 26 July 2010 diff hist +170‎ New Assembly Release Process Details ‎ adding updating hgcentral.sql from checklist page to here
• 17:3917:39, 26 July 2010 diff hist +95‎ Ensembl QA ‎ added line about doing regular QA in addition to what is on this page
• 17:3217:32, 26 July 2010 diff hist −194‎ Ensembl QA ‎ removed reference to script that isn't useful. Tidied up language.

22 July 2010

• 21:1121:11, 22 July 2010 diff hist +237‎ CBSE citation format ‎ adding information about how to cite a paper within text and to make citations alphabetical

21 July 2010

• 23:2123:21, 21 July 2010 diff hist +152‎ Ensembl QA ‎ Adding point about looking at hgFixed, as well as numbering
• 23:1723:17, 21 July 2010 diff hist +55‎ m Ensembl QA ‎ adding categories
• 23:1723:17, 21 July 2010 diff hist +353‎ N Ensembl QA ‎ page creation
• 21:1121:11, 21 July 2010 diff hist +23‎ New track checklist ‎ little edits

16 July 2010

• 22:4922:49, 16 July 2010 diff hist +30‎ m UCSC Genes Staging Process ‎ adding Category:Browser QA tracks
• 22:4822:48, 16 July 2010 diff hist +30‎ m SNP Track QA ‎ adding Category:Browser QA tracks
• 22:4822:48, 16 July 2010 diff hist +30‎ m QAing UCSC Genes ‎ adding Category:Browser QA tracks
• 22:4722:47, 16 July 2010 diff hist +30‎ m New track checklist ‎ adding Category:Browser QA tracks
• 22:4622:46, 16 July 2010 diff hist +30‎ m Conservation Track QA ‎ adding Category:Browser QA tracks
• 22:4622:46, 16 July 2010 diff hist +87‎ N Category:Browser QA tracks ‎ New page: This category contains pages that give directions on how to QA a specific type of track current
• 22:4522:45, 16 July 2010 diff hist +30‎ m Chains and Nets QA ‎ adding Category:Browser QA tracks
• 22:3022:30, 16 July 2010 diff hist +292‎ New track checklist ‎ adding link to good page as well as Checking Length Labels
• 22:2722:27, 16 July 2010 diff hist +25‎ m Replacing old tables with new ones ‎ adding category: browser QA

14 July 2010

• 18:2318:23, 14 July 2010 diff hist +19‎ m SNP Track QA ‎ another edit to make it more clear
• 17:4117:41, 14 July 2010 diff hist +65‎ m SNP Track QA ‎ adding bit about runBits.csh
• 17:4017:40, 14 July 2010 diff hist +32‎ m SNP Track QA ‎ rewording a step so more clear

13 July 2010

• 23:1223:12, 13 July 2010 diff hist +24‎ m SNP Track QA ‎ making bullets look nicer
• 23:0923:09, 13 July 2010 diff hist +2,965‎ N SNP Track QA ‎ starting wiki page about QAing SNPs

30 June 2010

• 18:4018:40, 30 June 2010 diff hist +218‎ m CBSE citation format ‎ adding example for book chapter
• 17:0617:06, 30 June 2010 diff hist +297‎ Conservation Track QA ‎ added clarification for how to reach hgPal

25 June 2010

• 22:2722:27, 25 June 2010 diff hist +112‎ m Conservation Track QA ‎ adding clarification for the "Make sure that this page includes all the extra sections (if the multizs have been annotated)." section

23 June 2010

• 23:0823:08, 23 June 2010 diff hist +123‎ Presentations ‎ adding the audio from Ed Green's talk
• 23:0723:07, 23 June 2010 diff hist +658‎ N File:Genecats062310.mp3 ‎ At this week's genecats meeting, Ed Green will be giving the talk "Detecting positive selection in humans using the Neandertal genome". Description: We recently completed one-fold coverage of the Neandertal genome. Despite their 300,000 year old populati current

18 June 2010

• 23:1623:16, 18 June 2010 diff hist +25‎ m Internet browser testing ‎ adding category: browser QA
• 23:1523:15, 18 June 2010 diff hist +1,089‎ N Internet browser testing ‎ adding page to wiki

17 June 2010

• 21:3421:34, 17 June 2010 diff hist +182‎ Presentations ‎ adding audio for Steve Benz's advancement as well as slides and audio for larry's web 2.0 genecats
• 21:2821:28, 17 June 2010 diff hist 0‎ N File:Genecats061610.pdf ‎No edit summary current
• 21:2521:25, 17 June 2010 diff hist 0‎ N File:Genecats061610.mp3 ‎No edit summary current
• 21:2421:24, 17 June 2010 diff hist 0‎ N File:BenzAdvancement061510.mp3 ‎No edit summary current

16 June 2010

• 00:1700:17, 16 June 2010 diff hist +49‎ m New Assembly Release Process Details ‎ made link and fixed typo

14 June 2010

• 21:5721:57, 14 June 2010 diff hist −1‎ m Conservation Track QA ‎ →‎To see the list of assemblies actually used to build the tracks:: changing path so correct
• 20:1720:17, 14 June 2010 diff hist +3‎ m Git: CVS equivalent operations ‎ fixing spacing for checking out a tree

10 June 2010

• 00:1700:17, 10 June 2010 diff hist +44‎ m Presentations ‎ adding link to partial audio for genecats 06.09.10
• 00:1500:15, 10 June 2010 diff hist +90‎ N File:Genecats060910.mp3 ‎ Last 45 min from Genecats on June 9th, 2010: Transition to Git. Galt Barber is presenting. current

3 June 2010

• 20:3720:37, 3 June 2010 diff hist +11‎ m Chains and Nets QA ‎ forgot to add hgdownload to one of the htdocs

21 May 2010

• 22:1922:19, 21 May 2010 diff hist −2‎ m Static content for new assemblies ‎ wrong preposition
• 22:1822:18, 21 May 2010 diff hist +88‎ Static content for new assemblies ‎ changing file path for downloads on hgwdev to be htdocs-hgdownload
• 22:1622:16, 21 May 2010 diff hist +97‎ New Release Checklist ‎ changing file path for downloads on hgwdev to be htdocs-hgdownload
• 22:1422:14, 21 May 2010 diff hist +11‎ m New Assembly Release Process Details ‎ forgot downloads.html was also put into htdocs-hgdownload
• 21:5621:56, 21 May 2010 diff hist −21‎ New Release Checklist ‎ changing link to 2bit reference in details page
• 21:5521:55, 21 May 2010 diff hist −75‎ New Assembly Release Process Details ‎ making it look nicer, taking out cruft. also adding tag for 2bit so can link to it from checklist
• 21:5021:50, 21 May 2010 diff hist +413‎ New Assembly Release Process Details ‎ changing file path for downloads on hgwdev to be htdocs-hgdownload
• 21:3821:38, 21 May 2010 diff hist +11‎ m New Release Checklist ‎ forgot to put in "goldenPath" in a path
• 21:3621:36, 21 May 2010 diff hist +526‎ New Assembly Release Process Details ‎ adding step to check blat servers and .2bit files
• 21:2821:28, 21 May 2010 diff hist +242‎ New Release Checklist ‎ adding step to check blat servers and .2bit files

12 May 2010

• 17:5317:53, 12 May 2010 diff hist +81‎ m New Release Checklist ‎ editing contacting Branwyn since no longer announcement page on cbse

3 May 2010

• 18:4518:45, 3 May 2010 diff hist +123‎ m New Assembly Release Process Details ‎ edited gbdb push so that don't push unnecessary files
• 18:4218:42, 3 May 2010 diff hist +317‎ m New Assembly Release Process Details ‎ adding things to look out for when doing hgcentral.liftOverChain
• 18:2818:28, 3 May 2010 diff hist +3‎ m Chains and Nets QA ‎ adding a -e to the hgsql statement

29 April 2010

• 20:4320:43, 29 April 2010 diff hist +161‎ m Chains and Nets QA ‎ added information about how to load data into mysql from a file

27 April 2010

• 17:2917:29, 27 April 2010 diff hist −1,039‎ New Assembly Release Process Details ‎ added page about static content and linked to it from here.
• 17:2717:27, 27 April 2010 diff hist +3,459‎ N Static content for new assemblies ‎ creating page

22 April 2010

• 18:2618:26, 22 April 2010 diff hist +1,863‎ N Updating blat servers ‎ created page on how to edit the blat server lines in hgcentral

21 April 2010

• 17:2617:26, 21 April 2010 diff hist −1‎ m New Release Checklist ‎ adding mark as contact for N-Scan predicitions track

12 April 2010

• 21:5021:50, 12 April 2010 diff hist +22‎ m New Assembly Release Process Details ‎ adding clarification for checking .2bit files
• 21:4621:46, 12 April 2010 diff hist −20‎ m New Assembly Release Process Details ‎ fixed it so some html tags don't show
• 21:3521:35, 12 April 2010 diff hist +481‎ New Assembly Release Process Details ‎ Added step of checking chrom sizes before staging on beta

31 March 2010

• 21:1421:14, 31 March 2010 diff hist +1‎ m Replacing old tables with new ones ‎ typo
• 21:1421:14, 31 March 2010 diff hist −6‎ m Replacing old tables with new ones ‎ changing so reflects changes to tri-state trackDb and editing so email says "table" rather than "db.table"
• 21:1221:12, 31 March 2010 diff hist +106‎ m Chains and Nets QA ‎ changing so reflects changes to tri-state trackDb
• 16:1616:16, 31 March 2010 diff hist −72‎ m Browser Installation ‎ changed reference to mysql 5 instead of mysql 4

25 March 2010

• 22:3622:36, 25 March 2010 diff hist 0‎ m Minimal Browser Installation ‎ making genome.ucsc.edu link work and taking comma out of link to Mirror Instructions

9 March 2010

• 22:0622:06, 9 March 2010 diff hist −31‎ Replacing old tables with new ones ‎No edit summary
• 01:0301:03, 9 March 2010 diff hist −941‎ Chains and Nets QA ‎ Took out part of page relevant to all new tracks and created another page
• 01:0201:02, 9 March 2010 diff hist +2,343‎ N Replacing old tables with new ones ‎ creating page

8 March 2010

• 23:4623:46, 8 March 2010 diff hist −1‎ m Chains and Nets QA ‎ fixing some typos

5 March 2010

• 01:3101:31, 5 March 2010 diff hist +8‎ m Chains and Nets QA ‎ →‎After QAing on hgwbeta: Pushing to the RR: : little typo
• 01:2301:23, 5 March 2010 diff hist +2,179‎ Chains and Nets QA ‎ Same information, just restructured it to make sense. Also pulled some information from referenced webpages.