User contributions for Marygoldman
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7 July 2011
- 23:0623:06, 7 July 2011 diff hist +39 CGI functions →hgNear
- 23:0623:06, 7 July 2011 diff hist +41 CGI functions →phyloGif
- 23:0523:05, 7 July 2011 diff hist +43 CGI functions →hgVisigene
- 23:0523:05, 7 July 2011 diff hist +39 CGI functions →hgTracks
- 23:0523:05, 7 July 2011 diff hist +41 CGI functions →hgTables
- 23:0423:04, 7 July 2011 diff hist +42 CGI functions →hgSession
- 23:0423:04, 7 July 2011 diff hist +38 CGI functions →hgPcr
- 23:0323:03, 7 July 2011 diff hist +43 CGI functions →hgLiftOver
- 23:0323:03, 7 July 2011 diff hist +41 CGI functions →hgGenome
- 23:0223:02, 7 July 2011 diff hist +42 CGI functions →hgGateway
- 23:0223:02, 7 July 2011 diff hist +42 CGI functions →hgCustom
- 23:0123:01, 7 July 2011 diff hist +39 CGI functions →hgBlat
- 22:5822:58, 7 July 2011 diff hist +204 CGI functions adding phyloGif
- 22:5522:55, 7 July 2011 diff hist −2 CGI functions →hgNear
- 22:5522:55, 7 July 2011 diff hist 0 CGI functions →hgc
- 22:5422:54, 7 July 2011 diff hist +1 m CGI functions →hgBlat
- 22:4522:45, 7 July 2011 diff hist 0 m CGI functions putting the cgis in alphabetical order
- 22:4022:40, 7 July 2011 diff hist −8 CGI functions →hgEncodeVocab
- 22:4022:40, 7 July 2011 diff hist −5 CGI functions →hgPal
- 22:4022:40, 7 July 2011 diff hist −5 m CGI functions →cartDump and cartReset
- 22:2822:28, 7 July 2011 diff hist +4,063 N CGI functions making this page about the CGIs for new staff as well as mirror managers
3 March 2011
- 00:4400:44, 3 March 2011 diff hist +172 Resolving merge conflicts in Git →Tools specifically for when git refuses to start merge
- 00:4200:42, 3 March 2011 diff hist +61 Resolving merge conflicts in Git →git reset
- 00:4000:40, 3 March 2011 diff hist +13 Resolving merge conflicts in Git →git status
- 00:3900:39, 3 March 2011 diff hist 0 Resolving merge conflicts in Git →How do I know which files have conflicts in them?
- 00:3900:39, 3 March 2011 diff hist +13 Resolving merge conflicts in Git →How do I know which files have conflicts in them?
- 00:3600:36, 3 March 2011 diff hist +114 Resolving merge conflicts in Git →Git can fail during the merge
- 00:3600:36, 3 March 2011 diff hist −18 Resolving merge conflicts in Git →Git can fail to start the merge
- 00:3500:35, 3 March 2011 diff hist +170 Resolving merge conflicts in Git →Git can fail to start the merge
- 00:3200:32, 3 March 2011 diff hist −397 Resolving merge conflicts in Git →git stash
- 00:3000:30, 3 March 2011 diff hist −88 Working with Git →'git merge'
- 00:3000:30, 3 March 2011 diff hist −22 Working with Git →'git pull'
- 00:2800:28, 3 March 2011 diff hist +267 Working with Git →'git stash'
- 00:2000:20, 3 March 2011 diff hist −4 Working with Git →'git stash'
- 00:1900:19, 3 March 2011 diff hist −63 Working with Git →'git pull'
2 March 2011
- 21:4321:43, 2 March 2011 diff hist +95 Resolving merge conflicts in Git →General tools
- 21:4121:41, 2 March 2011 diff hist +15 Resolving merge conflicts in Git →Tools specifically for when git conflicts arise during a merge
- 21:3521:35, 2 March 2011 diff hist −46 Resolving merge conflicts in Git →git checkout
- 21:3321:33, 2 March 2011 diff hist +2 Resolving merge conflicts in Git →How do I find conflicts within the file itself?
- 21:3221:32, 2 March 2011 diff hist +23 Resolving merge conflicts in Git →How do I know which files have conflicts in them?
- 21:2621:26, 2 March 2011 diff hist −2 Resolving merge conflicts in Git →Two ways git merge/git pull can fail
- 21:2021:20, 2 March 2011 diff hist +37 Resolving merge conflicts in Git →Git refuses to start a merge/pull
- 21:1921:19, 2 March 2011 diff hist +82 Resolving merge conflicts in Git →Git refuses to start a merge/pull
- 21:1921:19, 2 March 2011 diff hist 0 Resolving merge conflicts in Git →Git is unable to resolve a merge/pull
- 21:1821:18, 2 March 2011 diff hist +89 Resolving merge conflicts in Git →Git is unable to resolve a merge/pull
- 21:1721:17, 2 March 2011 diff hist −49 m Resolving merge conflicts in Git →Git refuses to start a merge/pull
- 21:0621:06, 2 March 2011 diff hist −2 Resolving merge conflicts in Git →git status
- 21:0321:03, 2 March 2011 diff hist +1 Resolving merge conflicts in Git →git reset
- 21:0321:03, 2 March 2011 diff hist +1 Resolving merge conflicts in Git →git reset
- 21:0221:02, 2 March 2011 diff hist +86 Resolving merge conflicts in Git →git reset
- 20:5820:58, 2 March 2011 diff hist 0 Resolving merge conflicts in Git →git reset
- 20:5720:57, 2 March 2011 diff hist +273 Resolving merge conflicts in Git →Great tools to help you resolve a merge conflict
- 20:5020:50, 2 March 2011 diff hist −5 Resolving merge conflicts in Git →Two ways git merge/git pull can fail
- 19:5619:56, 2 March 2011 diff hist +7 Resolving merge conflicts in Git →Two ways git merge/git pull can fail
- 19:5519:55, 2 March 2011 diff hist +36 Resolving merge conflicts in Git →Common questions
- 01:2201:22, 2 March 2011 diff hist −1 Resolving merge conflicts in Git →Git is unable to resolve a merge/pull
- 01:2201:22, 2 March 2011 diff hist −1 Resolving merge conflicts in Git →Git refuses to start a merge/pull
- 01:2101:21, 2 March 2011 diff hist +229 Resolving merge conflicts in Git →Tools to help you resolve a merge conflict
- 01:1901:19, 2 March 2011 diff hist +1,322 Resolving merge conflicts in Git →Common questions
- 00:5100:51, 2 March 2011 diff hist +63 Resolving merge conflicts in Git adding a common questions section
- 00:4900:49, 2 March 2011 diff hist +59 Resolving merge conflicts in Git →Two ways git merge/git pull can fail
- 00:4900:49, 2 March 2011 diff hist +9 Resolving merge conflicts in Git →Two ways git merge can fail
- 00:4900:49, 2 March 2011 diff hist +558 Resolving merge conflicts in Git →Why would my Merge Fail?
25 February 2011
- 18:2318:23, 25 February 2011 diff hist +49 Conservation Track QA →QAing the track
- 17:3017:30, 25 February 2011 diff hist +19 m Conservation Track QA →QAing the track
- 01:4801:48, 25 February 2011 diff hist +147 Conservation Track QA →Check trackDb.ra file
- 01:2801:28, 25 February 2011 diff hist −1 Conservation Track QA →Make sure hgPal works with this set of tables:
- 01:2801:28, 25 February 2011 diff hist +34 Conservation Track QA →QAing the track: reorganizing
- 01:2201:22, 25 February 2011 diff hist −3 Conservation Track QA →Things we used to do to QA the conservation track but no longer do
- 01:1201:12, 25 February 2011 diff hist +78 Conservation Track QA →Preparing to QA
- 01:1101:11, 25 February 2011 diff hist +32 Conservation Track QA →Check one maf file
- 01:0601:06, 25 February 2011 diff hist +4 Conservation Track QA →QAing track
- 00:1400:14, 25 February 2011 diff hist +79 Conservation Track QA →Read both README files
- 00:1100:11, 25 February 2011 diff hist +1 Conservation Track QA →Contact Galaxy:
- 00:1100:11, 25 February 2011 diff hist +2 Conservation Track QA →Make sure hgPal works with this set of tables:
- 00:1100:11, 25 February 2011 diff hist +1 Conservation Track QA →Test in the tables
- 00:1100:11, 25 February 2011 diff hist +1 Conservation Track QA →Test in the Genome Browser
- 00:1100:11, 25 February 2011 diff hist +2 Conservation Track QA →Figure out extFile and seq tables
- 00:1000:10, 25 February 2011 diff hist +2 Conservation Track QA →Check multizway#wayFrames table
- 00:1000:10, 25 February 2011 diff hist −2,820 Conservation Track QA →Preparing to QA
- 00:0800:08, 25 February 2011 diff hist +2,586 Conservation Track QA →Preparing to QA
- 00:0300:03, 25 February 2011 diff hist +20 Conservation Track QA →Make a list of all organisms for which there are nets & chains:
- 00:0200:02, 25 February 2011 diff hist +2 Conservation Track QA →Make sure that pushQ entry has all gbdb files and downloads needed for the track
- 00:0200:02, 25 February 2011 diff hist −221 Conservation Track QA →Make a list of all organisms in the Conservation track:
- 00:0000:00, 25 February 2011 diff hist +4 Conservation Track QA →Pre-QA prep
24 February 2011
- 23:1423:14, 24 February 2011 diff hist +161 Conservation Track QA →QAing Conservation and Most Conserved tracks for a new assembly
23 February 2011
- 19:5919:59, 23 February 2011 diff hist +94 Releasing an assembly →Pre-staging of assembly on hgwbeta: adding bit to claim main pushQ entry
22 February 2011
- 22:5722:57, 22 February 2011 diff hist −5 Releasing an assembly →Push the database and tables from hgwdev to hgwbeta
- 19:3019:30, 22 February 2011 diff hist −80 Releasing an assembly →Announce the Release on genome-announce@soe.ucsc.edu and genecats@soe.ucsc.edu
- 19:2919:29, 22 February 2011 diff hist −7 Releasing an assembly →Verify downloads
- 19:2819:28, 22 February 2011 diff hist 0 Releasing an assembly →Stage assembly on Round Robin
- 19:2819:28, 22 February 2011 diff hist −124 Releasing an assembly →Ensure the active column in hgcentral.dbDb is set to 0
- 19:2619:26, 22 February 2011 diff hist −116 Releasing an assembly →Enable Assembly on RR and post-release follow-up
14 February 2011
- 22:5322:53, 14 February 2011 diff hist −526 Releasing an assembly →Chain/Nets/LiftOvers from other organisms
- 22:3822:38, 14 February 2011 diff hist +223 Releasing an assembly →blatServers, genomeClade, gdbPdb (NOT liftOver)
- 22:3422:34, 14 February 2011 diff hist +166 Releasing an assembly →Review all tracks in the sub-pushQ
8 February 2011
- 02:0102:01, 8 February 2011 diff hist +40 Releasing an assembly →If the new assembly is an update to the human, mouse, rat, zebrafish, D. melanogaster, C. elegans, or S. cerevisiae genomes, make sure that the appropriate blastTab tables to this assembly are built
- 02:0002:00, 8 February 2011 diff hist +50 Releasing an assembly →Check the release log
- 02:0002:00, 8 February 2011 diff hist +78 Releasing an assembly →Enable Assembly on RR and post-release follow-up
- 01:5901:59, 8 February 2011 diff hist −164 Releasing an assembly →Next day follow-up
- 01:5401:54, 8 February 2011 diff hist +265 Releasing an assembly →You may need to update all.joiner for the RR
- 01:5201:52, 8 February 2011 diff hist +60 Releasing an assembly →Update hgcentral.sql for mirrors
- 01:5001:50, 8 February 2011 diff hist −109 Releasing an assembly →Announce the Release on genome@soe.ucsc.edu and genecats@soe.ucsc.edu
- 01:4901:49, 8 February 2011 diff hist +100 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4701:47, 8 February 2011 diff hist −95 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4601:46, 8 February 2011 diff hist +116 Releasing an assembly →Figure out if either you or Donna is going to edit the static docs
- 01:4401:44, 8 February 2011 diff hist +44 Releasing an assembly →Turn on genome-mysql
- 01:4001:40, 8 February 2011 diff hist −57 Releasing an assembly →Confirm that downloads and currentGenome are functional
- 01:4001:40, 8 February 2011 diff hist +60 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3901:39, 8 February 2011 diff hist +55 Releasing an assembly →Push Downloads from hgwdev to hgdownload
- 01:3801:38, 8 February 2011 diff hist +1 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3601:36, 8 February 2011 diff hist +41 Releasing an assembly →Remove assembly from mirror "exclude" list
- 01:3501:35, 8 February 2011 diff hist +65 Releasing an assembly →Verify again that everything is working as expected on the RR
- 01:3501:35, 8 February 2011 diff hist −82 Releasing an assembly →Enable Assembly on RR and post-release follow-up
- 01:3401:34, 8 February 2011 diff hist +61 Releasing an assembly →Chain/Nets to other organisms
- 01:3101:31, 8 February 2011 diff hist +72 Releasing an assembly →Set active=1 in hgcentral
- 01:3001:30, 8 February 2011 diff hist −17 Releasing an assembly →Test the assembly tracks, BLAT and PCR on the RR
- 01:2401:24, 8 February 2011 diff hist −44 Releasing an assembly →Request dump and autodump of database
- 01:2201:22, 8 February 2011 diff hist −37 Releasing an assembly →Turn on genbank updates on the RR
- 01:2201:22, 8 February 2011 diff hist +147 Releasing an assembly →Turn on genbank updates on the RR
- 01:2001:20, 8 February 2011 diff hist −7 Releasing an assembly →Update hgcentral
- 01:1901:19, 8 February 2011 diff hist +201 Releasing an assembly →Update hgcentral
- 01:1501:15, 8 February 2011 diff hist −1 Releasing an assembly →rsync /gbdb again as necessary
- 01:1401:14, 8 February 2011 diff hist −1 Releasing an assembly →Request rsync of entire database from push-request
- 01:1401:14, 8 February 2011 diff hist +100 Releasing an assembly →Request rsync of entire database from push-request
- 01:1101:11, 8 February 2011 diff hist −2 Releasing an assembly →Adjust the release log in main pushQ
- 01:1101:11, 8 February 2011 diff hist +7 Releasing an assembly →Email warning genome-mirror at least 24 hours before release
- 01:1001:10, 8 February 2011 diff hist +9 Releasing an assembly →Make sure no tables need to be repushed from hgwdev to hgwbeta
- 01:0901:09, 8 February 2011 diff hist +135 Releasing an assembly →Stage assembly on Round Robin
- 01:0401:04, 8 February 2011 diff hist +140 Releasing an assembly →Verify that liftOvers are in liftOvers directories and not in vs* Directories
- 01:0101:01, 8 February 2011 diff hist −13 Releasing an assembly →Verify downloads
- 00:5800:58, 8 February 2011 diff hist +42 Releasing an assembly →Check Blat and PCR
- 00:5500:55, 8 February 2011 diff hist +1 Releasing an assembly →Check that all of the MySQL tables are in good repair
- 00:5400:54, 8 February 2011 diff hist +2 Releasing an assembly →Check to make sure that none of the table names have underscores(_)
- 00:5400:54, 8 February 2011 diff hist −7 Releasing an assembly →Run featureBits to verify that the gold and gap tables together cover the entire genome
- 00:5300:53, 8 February 2011 diff hist −1 Releasing an assembly →Check indices
- 00:5200:52, 8 February 2011 diff hist +31 Releasing an assembly →Check indices
- 00:5000:50, 8 February 2011 diff hist +1 Releasing an assembly →Check that all tables in this database are mentioned in all.joiner
- 00:5000:50, 8 February 2011 diff hist +4 Releasing an assembly →joinerCheck
- 00:2600:26, 8 February 2011 diff hist −3 Releasing an assembly →Turn on GenBank updates
- 00:2000:20, 8 February 2011 diff hist +1 m Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 00:2000:20, 8 February 2011 diff hist +103 Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway
- 00:1800:18, 8 February 2011 diff hist −6 m Releasing an assembly →Test on hgwbeta: re-ordering list
- 00:1600:16, 8 February 2011 diff hist +6 Releasing an assembly →Check the .2bit files
- 00:1300:13, 8 February 2011 diff hist −1 m Releasing an assembly →Push /gbdb/$db and html/description.html=
- 00:1300:13, 8 February 2011 diff hist −25 Releasing an assembly →Push files
- 00:0900:09, 8 February 2011 diff hist −4 Releasing an assembly →=genomeClade and gdbPdb
- 00:0800:08, 8 February 2011 diff hist −2 Releasing an assembly →genomeClade and gdbPdb
7 February 2011
- 23:5823:58, 7 February 2011 diff hist −3 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +28 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +20 Releasing an assembly →blatServers
- 23:4823:48, 7 February 2011 diff hist −194 Releasing an assembly →blatServers
- 23:4423:44, 7 February 2011 diff hist +2 Releasing an assembly →dbDb
- 23:4223:42, 7 February 2011 diff hist +29 Releasing an assembly →Push chain/net tables in other organisms
- 23:4123:41, 7 February 2011 diff hist −9 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3923:39, 7 February 2011 diff hist −27 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3823:38, 7 February 2011 diff hist +5 Releasing an assembly →Check if chromosome sizes have changed significantly
- 23:3423:34, 7 February 2011 diff hist −9 Releasing an assembly →Send email to markd and Jeltje van Baren: jeltje at cse.wustl.edu so that they can being doing their N-Scan predictions
- 23:3223:32, 7 February 2011 diff hist −3 Releasing an assembly →Check that there the chain/nets and liftOvers listed in the pushQ are to valid assemblies on the RR
2 February 2011
- 19:2219:22, 2 February 2011 diff hist +1 m Replacing old tables with new ones →Example: adding a -N to the mysql command so that you don't get the table title in the file
20 January 2011
- 22:0022:00, 20 January 2011 diff hist +228 m Working with branches in Git →How do I make a branch?: adding clarification as to why you should preface your branch name with your user name
- 21:5821:58, 20 January 2011 diff hist −16 m Working with branches in Git →How do I make a branch?: removing confusing comment about "noted above"
19 January 2011
- 23:4623:46, 19 January 2011 diff hist −8 m Releasing an assembly →Next day follow-up
- 23:4523:45, 19 January 2011 diff hist −4 m Releasing an assembly →Enable Assembly on RR and post-release follow-up: formatting
- 23:4423:44, 19 January 2011 diff hist −3 m Releasing an assembly →Stage assembly on Round Robin: formatting
- 23:4423:44, 19 January 2011 diff hist −8 m Releasing an assembly →Verify the downloads: formatting
- 23:3523:35, 19 January 2011 diff hist −1 m Releasing an assembly →Check that all of the MySQL tables are in good repair: formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Make sure that there is a liftOver file from the previous assembly to this assembly: formatting
- 23:3423:34, 19 January 2011 diff hist −9 m Releasing an assembly →Check to make sure that none of the table names have underscores(_): formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Check indices: formatting
- 23:3323:33, 19 January 2011 diff hist −2 m Releasing an assembly →Check that all tables in this database are mentioned in all.joiner=: formatting
- 23:3323:33, 19 January 2011 diff hist 0 m Releasing an assembly →Check that common keys between tables are in sync: formatting
- 23:3223:32, 19 January 2011 diff hist −2 m Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway: formatting
- 23:3123:31, 19 January 2011 diff hist −2 Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 23:3123:31, 19 January 2011 diff hist −2 m Releasing an assembly →Turn on GenBank updates: formatting
- 23:3023:30, 19 January 2011 diff hist −1 m Releasing an assembly →Make trackDb on hgwbeta: formatting
- 23:3023:30, 19 January 2011 diff hist −2 m Releasing an assembly →Push image file to hgwbeta and rr: formatting
- 23:2223:22, 19 January 2011 diff hist −1 m Releasing an assembly →liftOverChain: formatting
- 23:2123:21, 19 January 2011 diff hist −61 m Releasing an assembly →blatServers: formatting
- 23:2023:20, 19 January 2011 diff hist −1 m Releasing an assembly →dbDb: formatting
- 23:1923:19, 19 January 2011 diff hist −1 m Releasing an assembly →Push chain/net tables in other organisms: formatting
- 23:1923:19, 19 January 2011 diff hist −9 m Releasing an assembly →Create database on hgwbeta and push tables for $db: formatting
- 23:1723:17, 19 January 2011 diff hist −2 m Releasing an assembly →Check if chromosome sizes have changed significantly: formatting
- 23:1123:11, 19 January 2011 diff hist +25,917 N Releasing an assembly New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update assembly, check to see if chromosome sizes have changed ...
14 January 2011
- 23:4423:44, 14 January 2011 diff hist +25 BlastTabs adding browserQA category link
- 00:5400:54, 14 January 2011 diff hist +2 m CGI Build Process changed reference to two-week schedule to be three-week schedule
- 00:0900:09, 14 January 2011 diff hist +96 Working with Git →'git log [path/fileName]': adding a bit of clarification to Galt's edit
13 January 2011
- 19:4419:44, 13 January 2011 diff hist +33 m CGI Testing →hgGene
12 January 2011
- 01:2601:26, 12 January 2011 diff hist +9 Working with branches in Git →How do I share my branch with others for team development?
- 01:2501:25, 12 January 2011 diff hist +86 Working with branches in Git →Three types of projects you might to do in a development branch
- 01:2401:24, 12 January 2011 diff hist +1 Working with branches in Git →Why use branches
- 01:2401:24, 12 January 2011 diff hist −1,017 Working with branches in Git →Introduction
- 01:2301:23, 12 January 2011 diff hist +580 Working with branches in Git →How we use branches in our group
- 01:1701:17, 12 January 2011 diff hist +346 Working with branches in Git →The nitty gritty
- 01:1601:16, 12 January 2011 diff hist +4 Working with branches in Git →How do I ...
- 01:0801:08, 12 January 2011 diff hist −21 Working with branches in Git →How do I share my branch with others for team development?
- 01:0201:02, 12 January 2011 diff hist +170 Working with branches in Git →How do I share my branch with others for team development?
- 00:3200:32, 12 January 2011 diff hist +9 Working with branches in Git →FAQ
10 January 2011
- 18:0318:03, 10 January 2011 diff hist 0 Working with branches in Git →How do I share my branch with others for team development?
- 18:0318:03, 10 January 2011 diff hist −6 Working with branches in Git →How do I share my branch with others for team development on it?
- 18:0218:02, 10 January 2011 diff hist +35 Working with branches in Git →How do I make a branch?
- 17:5917:59, 10 January 2011 diff hist −2 Working with branches in Git →Why use branches
- 17:5717:57, 10 January 2011 diff hist +6 Working with branches in Git →Why use branches
7 January 2011
- 19:3219:32, 7 January 2011 diff hist −25 Working with branches in Git →What do I do if I'm only part way through a project and need to stop? How do I make sure that I keep my work I have already done without making a commit that I don't want other's to see?
- 19:3219:32, 7 January 2011 diff hist −11 Working with branches in Git →What do I do if I'm in the middle of a project on another branch and I need to do quickly make some minor change to the main branch (master)?
- 19:3119:31, 7 January 2011 diff hist +365 Working with branches in Git →How do I push my branch back to the main repository, so other people can work on my branch too?
- 19:2619:26, 7 January 2011 diff hist +130 Working with branches in Git →How do I commit only to the branch I am working on?: adding clarification
- 19:2519:25, 7 January 2011 diff hist +2 Working with branches in Git →FAQ: rearranging order of questions
- 19:2419:24, 7 January 2011 diff hist +20 Working with branches in Git →How do I push out my changes back onto the mainstream of development?
- 19:2319:23, 7 January 2011 diff hist +1 Working with branches in Git →How do I delete a branch?
- 19:2119:21, 7 January 2011 diff hist +85 Working with branches in Git →Why use branches
- 19:2019:20, 7 January 2011 diff hist −2 Working with branches in Git →Why use branches
- 19:2019:20, 7 January 2011 diff hist −42 Working with branches in Git →Why use branches
- 19:1919:19, 7 January 2011 diff hist −6 Working with branches in Git →Why use branches
- 19:0919:09, 7 January 2011 diff hist +58 Working with Git →Definitions
- 19:0919:09, 7 January 2011 diff hist −8 Working with branches in Git →How do I make a branch?
- 19:0819:08, 7 January 2011 diff hist −9 Working with branches in Git →Overview on how to use branches
- 19:0719:07, 7 January 2011 diff hist +13 Working with branches in Git →Why use branches
- 19:0519:05, 7 January 2011 diff hist +70 Working with branches in Git →What do I do if I'm only part way through a project and need to stop? How do I make sure that I keep my work I have already done without making a commit that I don't want other's to see?
- 19:0419:04, 7 January 2011 diff hist +1 Working with branches in Git →How do I move between branches?
- 19:0419:04, 7 January 2011 diff hist +18 Working with branches in Git →How do I move between branches?
- 19:0219:02, 7 January 2011 diff hist +31 Working with branches in Git →How do I move between branches?
- 19:0019:00, 7 January 2011 diff hist +255 Working with branches in Git →What do I do if I'm in the middle of a project on another branch and I need to do quickly make some minor change to the main branch (master)?
- 18:5818:58, 7 January 2011 diff hist +23 Working with branches in Git →How do I keep my branch up to date?
- 18:5718:57, 7 January 2011 diff hist +48 Working with branches in Git →How do I keep my branch up to date?
- 18:5618:56, 7 January 2011 diff hist +56 Working with branches in Git →How do I delete a branch?
- 00:3100:31, 7 January 2011 diff hist −9 Working with branches in Git →What do I do if I'm only part way through a project and need to stop? How do I make sure that I keep my work I have already done without making a commit that I don't want other's to see?
- 00:3000:30, 7 January 2011 diff hist +4 Working with branches in Git →How do I delete a branch?
- 00:2900:29, 7 January 2011 diff hist +2 Working with branches in Git →How do I know which branch am I on?
- 00:2900:29, 7 January 2011 diff hist +3 Working with branches in Git →How do I move between branches?
- 00:2900:29, 7 January 2011 diff hist +1 Working with branches in Git →How do I make a branch?
- 00:2800:28, 7 January 2011 diff hist +1 Working with branches in Git →How do I delete a branch?
- 00:2800:28, 7 January 2011 diff hist −1 m Working with branches in Git →Introduction: moving important information to a more prominent location
6 January 2011
- 23:5723:57, 6 January 2011 diff hist +5,983 N Working with branches in Git page creation
4 January 2011
- 02:2102:21, 4 January 2011 diff hist +2 m BlastTabs →How to QA blastTabs
- 02:2002:20, 4 January 2011 diff hist 0 BlastTabs →Very general overview on how blastTabs are made:: correct mis-information
- 02:1902:19, 4 January 2011 diff hist −1 m BlastTabs →What are the blastTabs tables: spelling
- 02:1802:18, 4 January 2011 diff hist +10 m BlastTabs →When to update blastTabs: making title more descriptive
- 02:1802:18, 4 January 2011 diff hist +11 m BlastTabs →What are blastTabs: making title more descriptive
- 02:1402:14, 4 January 2011 diff hist −6 BlastTabs →How to QA blastTabs: Unbolding last sentence so looks nicer
- 02:1302:13, 4 January 2011 diff hist −3 BlastTabs →When to update blastTabs: grammar edit
- 02:1102:11, 4 January 2011 diff hist +54 QAing UCSC Genes Adding link to new blastTabs page
- 02:0902:09, 4 January 2011 diff hist −23 Ensembl QA removing browserQA category link. Also, last commit was adding link to new blastTab page
- 02:0802:08, 4 January 2011 diff hist +4 Ensembl QA No edit summary
- 02:0702:07, 4 January 2011 diff hist +8,566 N BlastTabs page creation. Added in some of Brooke's comments already
29 December 2010
- 20:0420:04, 29 December 2010 diff hist −15 New Assembly Release Process Details →Stage and test on hgwbeta: correcting file path for making etc-update-rr for genbank updates
- 20:0220:02, 29 December 2010 diff hist +130 New Assembly Release Process Details →Push Data to Round Robin from hgwbeta: adding better documentation about how to get genbank tables
16 December 2010
- 00:1700:17, 16 December 2010 diff hist +155 Ensembl QA adding bit about watchin for blast tabs
9 December 2010
- 19:5319:53, 9 December 2010 diff hist −2 m CGI Testing →hgVisiGene: editing formating so looks better
3 December 2010
- 18:3418:34, 3 December 2010 diff hist +929 CGI Testing →hgTrackUi: finishing out edits
- 18:1218:12, 3 December 2010 diff hist −13 m CGI Testing →hgTrackUi: editing formatting so looks nicer
- 18:1018:10, 3 December 2010 diff hist +627 CGI Testing →hgTrackUi: adding tracks that are good to always test. saving and will be adding more info in next save
- 18:0118:01, 3 December 2010 diff hist +4 m CGI Testing separating out hgTrackUi so that I can add more details
- 18:0018:00, 3 December 2010 diff hist +88 m CGI Testing →hgBlat: adding point about testing the limits of blat
- 17:5817:58, 3 December 2010 diff hist +253 m CGI Testing →hgPcr: adding details
29 October 2010
- 16:1816:18, 29 October 2010 diff hist −4 Pushing trackDb changed incorrect reference to the hive to be gbdb
25 October 2010
- 23:3023:30, 25 October 2010 diff hist +13 Chains and Nets QA →After QAing on hgwbeta: Pushing to the RR: browser tree now in kent tree, clarification as to when to drop tables
22 October 2010
- 18:5318:53, 22 October 2010 diff hist +233 New Assembly Release Process Details →Stage and test on hgwbeta: added bit about where blat servers should be hosted
- 18:4918:49, 22 October 2010 diff hist +640 Updating blat servers adding information about new blat servers and where they are located
21 October 2010
- 17:1817:18, 21 October 2010 diff hist +227 Updating blat servers updating with Brooke's suggestions. Mainly that we stop testing beta so throughly
13 October 2010
- 16:5616:56, 13 October 2010 diff hist +134 New Assembly Release Process Details →Stage and test on hgwbeta: adding bit to check that gold and gap tables cover the entire genome
29 September 2010
- 20:2620:26, 29 September 2010 diff hist +110 Presentations →2010
- 20:2320:23, 29 September 2010 diff hist +25 N File:2010-09-29 - Genecats.pdf Andy Pohl's genecats talk current
7 September 2010
- 17:4517:45, 7 September 2010 diff hist +253 CGI Testing adding bit about hgApi
1 September 2010
- 19:1619:16, 1 September 2010 diff hist +403 Conservation Track QA adding bit about checking Frames table
30 August 2010
- 23:5923:59, 30 August 2010 diff hist +307 Providing remote audio for a meeting added where mic and laptop are current
25 August 2010
- 22:4122:41, 25 August 2010 diff hist +171 m Presentations uploading audio from Ann's presentation
- 22:4022:40, 25 August 2010 diff hist +19 N File:Genecats082510.mp3 rolling out redmine current
11 August 2010
- 18:4518:45, 11 August 2010 diff hist +19 Working with Git →Definitions: making the first word bold
- 18:3818:38, 11 August 2010 diff hist −37 Working with Git →Fixing un-wanted changes
- 18:3318:33, 11 August 2010 diff hist −4 Working with Git →Commit IDs and Referring ancestors
- 18:3218:32, 11 August 2010 diff hist +1,650 Working with Git →Referring ancestors (aka previous commits)
- 18:1018:10, 11 August 2010 diff hist −34 Working with Git →Git structure: putting synonyms up in defs and added section that will add to in a bit
- 17:4617:46, 11 August 2010 diff hist +12 Working with Git →'git merge'
- 17:3917:39, 11 August 2010 diff hist −3 Working with Git →'git show [--stat] commitID[:path/fileName]'
- 17:2217:22, 11 August 2010 diff hist −46 Working with Git →Fixing un-wanted changes
- 17:2217:22, 11 August 2010 diff hist +17 Working with Git →Fixing un-wanted changes
- 17:1617:16, 11 August 2010 diff hist −2 Working with Git →'git commit -m "some message" fileName(s)'
- 17:1417:14, 11 August 2010 diff hist +23 Working with Git →Terms that can refer to multiple things
- 17:1317:13, 11 August 2010 diff hist −35 Working with Git →'git push'
- 17:1117:11, 11 August 2010 diff hist +9 Working with Git →Other good things to know
- 16:5216:52, 11 August 2010 diff hist +6 Working with Git →Other good things to know
- 16:4816:48, 11 August 2010 diff hist −2 Working with Git →'git log [path/fileName]': typo
- 16:4816:48, 11 August 2010 diff hist +21 Working with Git →Other good things to know
- 16:4616:46, 11 August 2010 diff hist +45 Working with Git →'git log [path/fileName]'
- 16:4116:41, 11 August 2010 diff hist +25 Working with Git →Fixing un-wanted changes
- 16:4016:40, 11 August 2010 diff hist +31 m Working with Git formatting: making the command names smaller
- 16:3716:37, 11 August 2010 diff hist +335 Working with Git moving warning message
- 16:2516:25, 11 August 2010 diff hist −9 Working with Git →'git pull'
- 16:2116:21, 11 August 2010 diff hist 0 m Working with Git moving git blame into better parent category
- 16:1716:17, 11 August 2010 diff hist −23 Working with Git →'git pull'
- 16:1616:16, 11 August 2010 diff hist +93 Working with Git →'git rm fileName'
- 16:1516:15, 11 August 2010 diff hist −101 Working with Git →'git add fileName'
- 01:0701:07, 11 August 2010 diff hist −96 Working with Git little edits plus making the commit-ID-interchangeable-with-HEAD thing at the end
10 August 2010
- 22:2222:22, 10 August 2010 diff hist +243 m Working with Git editing git fetch, merge and stash
- 22:1322:13, 10 August 2010 diff hist +2 Working with Git →Useful resources
- 22:1222:12, 10 August 2010 diff hist +182 m Working with Git adding useful resources
- 22:0722:07, 10 August 2010 diff hist −190 m Working with Git No edit summary
- 22:0422:04, 10 August 2010 diff hist +9,388 N Working with Git New page: ==Git structure== ===Definitions=== central repository – The main repository we all share. This is where we push files for everyone to use. Contains a history of everyone’s commits t...
- 17:4217:42, 10 August 2010 diff hist +1 m Providing remote audio for a meeting missing parenthesis
29 July 2010
- 20:5120:51, 29 July 2010 diff hist +3 Replacing old tables with new ones accidentially reference hgwdev rather than hgwbeta
- 00:0300:03, 29 July 2010 diff hist +2,025 N Providing remote audio for a meeting adding page
28 July 2010
- 16:5916:59, 28 July 2010 diff hist +61 m New Assembly Release Process Details added step about running doGenbankTests
26 July 2010
- 17:5717:57, 26 July 2010 diff hist +170 New Assembly Release Process Details adding updating hgcentral.sql from checklist page to here
- 17:3917:39, 26 July 2010 diff hist +95 Ensembl QA added line about doing regular QA in addition to what is on this page
- 17:3217:32, 26 July 2010 diff hist −194 Ensembl QA removed reference to script that isn't useful. Tidied up language.
22 July 2010
- 21:1121:11, 22 July 2010 diff hist +237 CBSE citation format adding information about how to cite a paper within text and to make citations alphabetical
21 July 2010
- 23:2123:21, 21 July 2010 diff hist +152 Ensembl QA Adding point about looking at hgFixed, as well as numbering
- 23:1723:17, 21 July 2010 diff hist +55 m Ensembl QA adding categories
- 23:1723:17, 21 July 2010 diff hist +353 N Ensembl QA page creation
- 21:1121:11, 21 July 2010 diff hist +23 New track checklist little edits
16 July 2010
- 22:4922:49, 16 July 2010 diff hist +30 m UCSC Genes Staging Process adding Category:Browser QA tracks
- 22:4822:48, 16 July 2010 diff hist +30 m SNP Track QA adding Category:Browser QA tracks
- 22:4822:48, 16 July 2010 diff hist +30 m QAing UCSC Genes adding Category:Browser QA tracks
- 22:4722:47, 16 July 2010 diff hist +30 m New track checklist adding Category:Browser QA tracks
- 22:4622:46, 16 July 2010 diff hist +30 m Conservation Track QA adding Category:Browser QA tracks
- 22:4622:46, 16 July 2010 diff hist +87 N Category:Browser QA tracks New page: This category contains pages that give directions on how to QA a specific type of track current
- 22:4522:45, 16 July 2010 diff hist +30 m Chains and Nets QA adding Category:Browser QA tracks
- 22:3022:30, 16 July 2010 diff hist +292 New track checklist adding link to good page as well as Checking Length Labels
- 22:2722:27, 16 July 2010 diff hist +25 m Replacing old tables with new ones adding category: browser QA
14 July 2010
- 18:2318:23, 14 July 2010 diff hist +19 m SNP Track QA another edit to make it more clear
- 17:4117:41, 14 July 2010 diff hist +65 m SNP Track QA adding bit about runBits.csh
- 17:4017:40, 14 July 2010 diff hist +32 m SNP Track QA rewording a step so more clear
13 July 2010
- 23:1223:12, 13 July 2010 diff hist +24 m SNP Track QA making bullets look nicer
- 23:0923:09, 13 July 2010 diff hist +2,965 N SNP Track QA starting wiki page about QAing SNPs
30 June 2010
- 18:4018:40, 30 June 2010 diff hist +218 m CBSE citation format adding example for book chapter
- 17:0617:06, 30 June 2010 diff hist +297 Conservation Track QA added clarification for how to reach hgPal
25 June 2010
- 22:2722:27, 25 June 2010 diff hist +112 m Conservation Track QA adding clarification for the "Make sure that this page includes all the extra sections (if the multizs have been annotated)." section
23 June 2010
- 23:0823:08, 23 June 2010 diff hist +123 Presentations adding the audio from Ed Green's talk
- 23:0723:07, 23 June 2010 diff hist +658 N File:Genecats062310.mp3 At this week's genecats meeting, Ed Green will be giving the talk "Detecting positive selection in humans using the Neandertal genome". Description: We recently completed one-fold coverage of the Neandertal genome. Despite their 300,000 year old populati current
18 June 2010
- 23:1623:16, 18 June 2010 diff hist +25 m Internet browser testing adding category: browser QA
- 23:1523:15, 18 June 2010 diff hist +1,089 N Internet browser testing adding page to wiki
17 June 2010
- 21:3421:34, 17 June 2010 diff hist +182 Presentations adding audio for Steve Benz's advancement as well as slides and audio for larry's web 2.0 genecats
- 21:2821:28, 17 June 2010 diff hist 0 N File:Genecats061610.pdf No edit summary current
- 21:2521:25, 17 June 2010 diff hist 0 N File:Genecats061610.mp3 No edit summary current
- 21:2421:24, 17 June 2010 diff hist 0 N File:BenzAdvancement061510.mp3 No edit summary current
16 June 2010
- 00:1700:17, 16 June 2010 diff hist +49 m New Assembly Release Process Details made link and fixed typo
14 June 2010
- 21:5721:57, 14 June 2010 diff hist −1 m Conservation Track QA →To see the list of assemblies actually used to build the tracks:: changing path so correct
- 20:1720:17, 14 June 2010 diff hist +3 m Git: CVS equivalent operations fixing spacing for checking out a tree
10 June 2010
- 00:1700:17, 10 June 2010 diff hist +44 m Presentations adding link to partial audio for genecats 06.09.10
- 00:1500:15, 10 June 2010 diff hist +90 N File:Genecats060910.mp3 Last 45 min from Genecats on June 9th, 2010: Transition to Git. Galt Barber is presenting. current
3 June 2010
- 20:3720:37, 3 June 2010 diff hist +11 m Chains and Nets QA forgot to add hgdownload to one of the htdocs
21 May 2010
- 22:1922:19, 21 May 2010 diff hist −2 m Static content for new assemblies wrong preposition
- 22:1822:18, 21 May 2010 diff hist +88 Static content for new assemblies changing file path for downloads on hgwdev to be htdocs-hgdownload
- 22:1622:16, 21 May 2010 diff hist +97 New Release Checklist changing file path for downloads on hgwdev to be htdocs-hgdownload
- 22:1422:14, 21 May 2010 diff hist +11 m New Assembly Release Process Details forgot downloads.html was also put into htdocs-hgdownload
- 21:5621:56, 21 May 2010 diff hist −21 New Release Checklist changing link to 2bit reference in details page
- 21:5521:55, 21 May 2010 diff hist −75 New Assembly Release Process Details making it look nicer, taking out cruft. also adding tag for 2bit so can link to it from checklist
- 21:5021:50, 21 May 2010 diff hist +413 New Assembly Release Process Details changing file path for downloads on hgwdev to be htdocs-hgdownload
- 21:3821:38, 21 May 2010 diff hist +11 m New Release Checklist forgot to put in "goldenPath" in a path
- 21:3621:36, 21 May 2010 diff hist +526 New Assembly Release Process Details adding step to check blat servers and .2bit files
- 21:2821:28, 21 May 2010 diff hist +242 New Release Checklist adding step to check blat servers and .2bit files
12 May 2010
- 17:5317:53, 12 May 2010 diff hist +81 m New Release Checklist editing contacting Branwyn since no longer announcement page on cbse
3 May 2010
- 18:4518:45, 3 May 2010 diff hist +123 m New Assembly Release Process Details edited gbdb push so that don't push unnecessary files
- 18:4218:42, 3 May 2010 diff hist +317 m New Assembly Release Process Details adding things to look out for when doing hgcentral.liftOverChain
- 18:2818:28, 3 May 2010 diff hist +3 m Chains and Nets QA adding a -e to the hgsql statement
29 April 2010
- 20:4320:43, 29 April 2010 diff hist +161 m Chains and Nets QA added information about how to load data into mysql from a file
27 April 2010
- 17:2917:29, 27 April 2010 diff hist −1,039 New Assembly Release Process Details added page about static content and linked to it from here.
- 17:2717:27, 27 April 2010 diff hist +3,459 N Static content for new assemblies creating page
22 April 2010
- 18:2618:26, 22 April 2010 diff hist +1,863 N Updating blat servers created page on how to edit the blat server lines in hgcentral
21 April 2010
- 17:2617:26, 21 April 2010 diff hist −1 m New Release Checklist adding mark as contact for N-Scan predicitions track
12 April 2010
- 21:5021:50, 12 April 2010 diff hist +22 m New Assembly Release Process Details adding clarification for checking .2bit files
- 21:4621:46, 12 April 2010 diff hist −20 m New Assembly Release Process Details fixed it so some html tags don't show
- 21:3521:35, 12 April 2010 diff hist +481 New Assembly Release Process Details Added step of checking chrom sizes before staging on beta
31 March 2010
- 21:1421:14, 31 March 2010 diff hist +1 m Replacing old tables with new ones typo
- 21:1421:14, 31 March 2010 diff hist −6 m Replacing old tables with new ones changing so reflects changes to tri-state trackDb and editing so email says "table" rather than "db.table"
- 21:1221:12, 31 March 2010 diff hist +106 m Chains and Nets QA changing so reflects changes to tri-state trackDb
- 16:1616:16, 31 March 2010 diff hist −72 m Browser Installation changed reference to mysql 5 instead of mysql 4
25 March 2010
- 22:3622:36, 25 March 2010 diff hist 0 m Minimal Browser Installation making genome.ucsc.edu link work and taking comma out of link to Mirror Instructions
9 March 2010
- 22:0622:06, 9 March 2010 diff hist −31 Replacing old tables with new ones No edit summary
- 01:0301:03, 9 March 2010 diff hist −941 Chains and Nets QA Took out part of page relevant to all new tracks and created another page
- 01:0201:02, 9 March 2010 diff hist +2,343 N Replacing old tables with new ones creating page
8 March 2010
- 23:4623:46, 8 March 2010 diff hist −1 m Chains and Nets QA fixing some typos
5 March 2010
- 01:3101:31, 5 March 2010 diff hist +8 m Chains and Nets QA →After QAing on hgwbeta: Pushing to the RR: : little typo
- 01:2301:23, 5 March 2010 diff hist +2,179 Chains and Nets QA Same information, just restructured it to make sense. Also pulled some information from referenced webpages.