User contributions for Marygoldman
From genomewiki
Jump to navigationJump to search
8 February 2011
- 01:2001:20, 8 February 2011 diff hist −7 Releasing an assembly →Update hgcentral
- 01:1901:19, 8 February 2011 diff hist +201 Releasing an assembly →Update hgcentral
- 01:1501:15, 8 February 2011 diff hist −1 Releasing an assembly →rsync /gbdb again as necessary
- 01:1401:14, 8 February 2011 diff hist −1 Releasing an assembly →Request rsync of entire database from push-request
- 01:1401:14, 8 February 2011 diff hist +100 Releasing an assembly →Request rsync of entire database from push-request
- 01:1101:11, 8 February 2011 diff hist −2 Releasing an assembly →Adjust the release log in main pushQ
- 01:1101:11, 8 February 2011 diff hist +7 Releasing an assembly →Email warning genome-mirror at least 24 hours before release
- 01:1001:10, 8 February 2011 diff hist +9 Releasing an assembly →Make sure no tables need to be repushed from hgwdev to hgwbeta
- 01:0901:09, 8 February 2011 diff hist +135 Releasing an assembly →Stage assembly on Round Robin
- 01:0401:04, 8 February 2011 diff hist +140 Releasing an assembly →Verify that liftOvers are in liftOvers directories and not in vs* Directories
- 01:0101:01, 8 February 2011 diff hist −13 Releasing an assembly →Verify downloads
- 00:5800:58, 8 February 2011 diff hist +42 Releasing an assembly →Check Blat and PCR
- 00:5500:55, 8 February 2011 diff hist +1 Releasing an assembly →Check that all of the MySQL tables are in good repair
- 00:5400:54, 8 February 2011 diff hist +2 Releasing an assembly →Check to make sure that none of the table names have underscores(_)
- 00:5400:54, 8 February 2011 diff hist −7 Releasing an assembly →Run featureBits to verify that the gold and gap tables together cover the entire genome
- 00:5300:53, 8 February 2011 diff hist −1 Releasing an assembly →Check indices
- 00:5200:52, 8 February 2011 diff hist +31 Releasing an assembly →Check indices
- 00:5000:50, 8 February 2011 diff hist +1 Releasing an assembly →Check that all tables in this database are mentioned in all.joiner
- 00:5000:50, 8 February 2011 diff hist +4 Releasing an assembly →joinerCheck
- 00:2600:26, 8 February 2011 diff hist −3 Releasing an assembly →Turn on GenBank updates
- 00:2000:20, 8 February 2011 diff hist +1 m Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 00:2000:20, 8 February 2011 diff hist +103 Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway
- 00:1800:18, 8 February 2011 diff hist −6 m Releasing an assembly →Test on hgwbeta: re-ordering list
- 00:1600:16, 8 February 2011 diff hist +6 Releasing an assembly →Check the .2bit files
- 00:1300:13, 8 February 2011 diff hist −1 m Releasing an assembly →Push /gbdb/$db and html/description.html=
- 00:1300:13, 8 February 2011 diff hist −25 Releasing an assembly →Push files
- 00:0900:09, 8 February 2011 diff hist −4 Releasing an assembly →=genomeClade and gdbPdb
- 00:0800:08, 8 February 2011 diff hist −2 Releasing an assembly →genomeClade and gdbPdb
7 February 2011
- 23:5823:58, 7 February 2011 diff hist −3 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +28 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +20 Releasing an assembly →blatServers
- 23:4823:48, 7 February 2011 diff hist −194 Releasing an assembly →blatServers
- 23:4423:44, 7 February 2011 diff hist +2 Releasing an assembly →dbDb
- 23:4223:42, 7 February 2011 diff hist +29 Releasing an assembly →Push chain/net tables in other organisms
- 23:4123:41, 7 February 2011 diff hist −9 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3923:39, 7 February 2011 diff hist −27 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3823:38, 7 February 2011 diff hist +5 Releasing an assembly →Check if chromosome sizes have changed significantly
- 23:3423:34, 7 February 2011 diff hist −9 Releasing an assembly →Send email to markd and Jeltje van Baren: jeltje at cse.wustl.edu so that they can being doing their N-Scan predictions
- 23:3223:32, 7 February 2011 diff hist −3 Releasing an assembly →Check that there the chain/nets and liftOvers listed in the pushQ are to valid assemblies on the RR
2 February 2011
- 19:2219:22, 2 February 2011 diff hist +1 m Replacing old tables with new ones →Example: adding a -N to the mysql command so that you don't get the table title in the file
20 January 2011
- 22:0022:00, 20 January 2011 diff hist +228 m Working with branches in Git →How do I make a branch?: adding clarification as to why you should preface your branch name with your user name
- 21:5821:58, 20 January 2011 diff hist −16 m Working with branches in Git →How do I make a branch?: removing confusing comment about "noted above"
19 January 2011
- 23:4623:46, 19 January 2011 diff hist −8 m Releasing an assembly →Next day follow-up
- 23:4523:45, 19 January 2011 diff hist −4 m Releasing an assembly →Enable Assembly on RR and post-release follow-up: formatting
- 23:4423:44, 19 January 2011 diff hist −3 m Releasing an assembly →Stage assembly on Round Robin: formatting
- 23:4423:44, 19 January 2011 diff hist −8 m Releasing an assembly →Verify the downloads: formatting
- 23:3523:35, 19 January 2011 diff hist −1 m Releasing an assembly →Check that all of the MySQL tables are in good repair: formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Make sure that there is a liftOver file from the previous assembly to this assembly: formatting
- 23:3423:34, 19 January 2011 diff hist −9 m Releasing an assembly →Check to make sure that none of the table names have underscores(_): formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Check indices: formatting
- 23:3323:33, 19 January 2011 diff hist −2 m Releasing an assembly →Check that all tables in this database are mentioned in all.joiner=: formatting
- 23:3323:33, 19 January 2011 diff hist 0 m Releasing an assembly →Check that common keys between tables are in sync: formatting
- 23:3223:32, 19 January 2011 diff hist −2 m Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway: formatting
- 23:3123:31, 19 January 2011 diff hist −2 Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 23:3123:31, 19 January 2011 diff hist −2 m Releasing an assembly →Turn on GenBank updates: formatting
- 23:3023:30, 19 January 2011 diff hist −1 m Releasing an assembly →Make trackDb on hgwbeta: formatting
- 23:3023:30, 19 January 2011 diff hist −2 m Releasing an assembly →Push image file to hgwbeta and rr: formatting
- 23:2223:22, 19 January 2011 diff hist −1 m Releasing an assembly →liftOverChain: formatting
- 23:2123:21, 19 January 2011 diff hist −61 m Releasing an assembly →blatServers: formatting
- 23:2023:20, 19 January 2011 diff hist −1 m Releasing an assembly →dbDb: formatting
- 23:1923:19, 19 January 2011 diff hist −1 m Releasing an assembly →Push chain/net tables in other organisms: formatting
- 23:1923:19, 19 January 2011 diff hist −9 m Releasing an assembly →Create database on hgwbeta and push tables for $db: formatting
- 23:1723:17, 19 January 2011 diff hist −2 m Releasing an assembly →Check if chromosome sizes have changed significantly: formatting
- 23:1123:11, 19 January 2011 diff hist +25,917 N Releasing an assembly New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update assembly, check to see if chromosome sizes have changed ...
14 January 2011
- 23:4423:44, 14 January 2011 diff hist +25 BlastTabs adding browserQA category link
- 00:5400:54, 14 January 2011 diff hist +2 m CGI Build Process changed reference to two-week schedule to be three-week schedule
- 00:0900:09, 14 January 2011 diff hist +96 Working with Git →'git log [path/fileName]': adding a bit of clarification to Galt's edit
13 January 2011
- 19:4419:44, 13 January 2011 diff hist +33 m CGI Testing →hgGene
12 January 2011
- 01:2601:26, 12 January 2011 diff hist +9 Working with branches in Git →How do I share my branch with others for team development?
- 01:2501:25, 12 January 2011 diff hist +86 Working with branches in Git →Three types of projects you might to do in a development branch
- 01:2401:24, 12 January 2011 diff hist +1 Working with branches in Git →Why use branches
- 01:2401:24, 12 January 2011 diff hist −1,017 Working with branches in Git →Introduction
- 01:2301:23, 12 January 2011 diff hist +580 Working with branches in Git →How we use branches in our group
- 01:1701:17, 12 January 2011 diff hist +346 Working with branches in Git →The nitty gritty
- 01:1601:16, 12 January 2011 diff hist +4 Working with branches in Git →How do I ...
- 01:0801:08, 12 January 2011 diff hist −21 Working with branches in Git →How do I share my branch with others for team development?
- 01:0201:02, 12 January 2011 diff hist +170 Working with branches in Git →How do I share my branch with others for team development?
- 00:3200:32, 12 January 2011 diff hist +9 Working with branches in Git →FAQ
10 January 2011
- 18:0318:03, 10 January 2011 diff hist 0 Working with branches in Git →How do I share my branch with others for team development?
- 18:0318:03, 10 January 2011 diff hist −6 Working with branches in Git →How do I share my branch with others for team development on it?
- 18:0218:02, 10 January 2011 diff hist +35 Working with branches in Git →How do I make a branch?
- 17:5917:59, 10 January 2011 diff hist −2 Working with branches in Git →Why use branches
- 17:5717:57, 10 January 2011 diff hist +6 Working with branches in Git →Why use branches
7 January 2011
- 19:3219:32, 7 January 2011 diff hist −25 Working with branches in Git →What do I do if I'm only part way through a project and need to stop? How do I make sure that I keep my work I have already done without making a commit that I don't want other's to see?
- 19:3219:32, 7 January 2011 diff hist −11 Working with branches in Git →What do I do if I'm in the middle of a project on another branch and I need to do quickly make some minor change to the main branch (master)?
- 19:3119:31, 7 January 2011 diff hist +365 Working with branches in Git →How do I push my branch back to the main repository, so other people can work on my branch too?
- 19:2619:26, 7 January 2011 diff hist +130 Working with branches in Git →How do I commit only to the branch I am working on?: adding clarification
- 19:2519:25, 7 January 2011 diff hist +2 Working with branches in Git →FAQ: rearranging order of questions
- 19:2419:24, 7 January 2011 diff hist +20 Working with branches in Git →How do I push out my changes back onto the mainstream of development?
- 19:2319:23, 7 January 2011 diff hist +1 Working with branches in Git →How do I delete a branch?
- 19:2119:21, 7 January 2011 diff hist +85 Working with branches in Git →Why use branches
- 19:2019:20, 7 January 2011 diff hist −2 Working with branches in Git →Why use branches
- 19:2019:20, 7 January 2011 diff hist −42 Working with branches in Git →Why use branches
- 19:1919:19, 7 January 2011 diff hist −6 Working with branches in Git →Why use branches
- 19:0919:09, 7 January 2011 diff hist +58 Working with Git →Definitions
- 19:0919:09, 7 January 2011 diff hist −8 Working with branches in Git →How do I make a branch?
- 19:0819:08, 7 January 2011 diff hist −9 Working with branches in Git →Overview on how to use branches
- 19:0719:07, 7 January 2011 diff hist +13 Working with branches in Git →Why use branches
- 19:0519:05, 7 January 2011 diff hist +70 Working with branches in Git →What do I do if I'm only part way through a project and need to stop? How do I make sure that I keep my work I have already done without making a commit that I don't want other's to see?
- 19:0419:04, 7 January 2011 diff hist +1 Working with branches in Git →How do I move between branches?