User contributions for Marygoldman
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8 February 2011
- 01:5401:54, 8 February 2011 diff hist +265 Releasing an assembly →You may need to update all.joiner for the RR
- 01:5201:52, 8 February 2011 diff hist +60 Releasing an assembly →Update hgcentral.sql for mirrors
- 01:5001:50, 8 February 2011 diff hist −109 Releasing an assembly →Announce the Release on genome@soe.ucsc.edu and genecats@soe.ucsc.edu
- 01:4901:49, 8 February 2011 diff hist +100 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4701:47, 8 February 2011 diff hist −95 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4601:46, 8 February 2011 diff hist +116 Releasing an assembly →Figure out if either you or Donna is going to edit the static docs
- 01:4401:44, 8 February 2011 diff hist +44 Releasing an assembly →Turn on genome-mysql
- 01:4001:40, 8 February 2011 diff hist −57 Releasing an assembly →Confirm that downloads and currentGenome are functional
- 01:4001:40, 8 February 2011 diff hist +60 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3901:39, 8 February 2011 diff hist +55 Releasing an assembly →Push Downloads from hgwdev to hgdownload
- 01:3801:38, 8 February 2011 diff hist +1 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3601:36, 8 February 2011 diff hist +41 Releasing an assembly →Remove assembly from mirror "exclude" list
- 01:3501:35, 8 February 2011 diff hist +65 Releasing an assembly →Verify again that everything is working as expected on the RR
- 01:3501:35, 8 February 2011 diff hist −82 Releasing an assembly →Enable Assembly on RR and post-release follow-up
- 01:3401:34, 8 February 2011 diff hist +61 Releasing an assembly →Chain/Nets to other organisms
- 01:3101:31, 8 February 2011 diff hist +72 Releasing an assembly →Set active=1 in hgcentral
- 01:3001:30, 8 February 2011 diff hist −17 Releasing an assembly →Test the assembly tracks, BLAT and PCR on the RR
- 01:2401:24, 8 February 2011 diff hist −44 Releasing an assembly →Request dump and autodump of database
- 01:2201:22, 8 February 2011 diff hist −37 Releasing an assembly →Turn on genbank updates on the RR
- 01:2201:22, 8 February 2011 diff hist +147 Releasing an assembly →Turn on genbank updates on the RR
- 01:2001:20, 8 February 2011 diff hist −7 Releasing an assembly →Update hgcentral
- 01:1901:19, 8 February 2011 diff hist +201 Releasing an assembly →Update hgcentral
- 01:1501:15, 8 February 2011 diff hist −1 Releasing an assembly →rsync /gbdb again as necessary
- 01:1401:14, 8 February 2011 diff hist −1 Releasing an assembly →Request rsync of entire database from push-request
- 01:1401:14, 8 February 2011 diff hist +100 Releasing an assembly →Request rsync of entire database from push-request
- 01:1101:11, 8 February 2011 diff hist −2 Releasing an assembly →Adjust the release log in main pushQ
- 01:1101:11, 8 February 2011 diff hist +7 Releasing an assembly →Email warning genome-mirror at least 24 hours before release
- 01:1001:10, 8 February 2011 diff hist +9 Releasing an assembly →Make sure no tables need to be repushed from hgwdev to hgwbeta
- 01:0901:09, 8 February 2011 diff hist +135 Releasing an assembly →Stage assembly on Round Robin
- 01:0401:04, 8 February 2011 diff hist +140 Releasing an assembly →Verify that liftOvers are in liftOvers directories and not in vs* Directories
- 01:0101:01, 8 February 2011 diff hist −13 Releasing an assembly →Verify downloads
- 00:5800:58, 8 February 2011 diff hist +42 Releasing an assembly →Check Blat and PCR
- 00:5500:55, 8 February 2011 diff hist +1 Releasing an assembly →Check that all of the MySQL tables are in good repair
- 00:5400:54, 8 February 2011 diff hist +2 Releasing an assembly →Check to make sure that none of the table names have underscores(_)
- 00:5400:54, 8 February 2011 diff hist −7 Releasing an assembly →Run featureBits to verify that the gold and gap tables together cover the entire genome
- 00:5300:53, 8 February 2011 diff hist −1 Releasing an assembly →Check indices
- 00:5200:52, 8 February 2011 diff hist +31 Releasing an assembly →Check indices
- 00:5000:50, 8 February 2011 diff hist +1 Releasing an assembly →Check that all tables in this database are mentioned in all.joiner
- 00:5000:50, 8 February 2011 diff hist +4 Releasing an assembly →joinerCheck
- 00:2600:26, 8 February 2011 diff hist −3 Releasing an assembly →Turn on GenBank updates
- 00:2000:20, 8 February 2011 diff hist +1 m Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 00:2000:20, 8 February 2011 diff hist +103 Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway
- 00:1800:18, 8 February 2011 diff hist −6 m Releasing an assembly →Test on hgwbeta: re-ordering list
- 00:1600:16, 8 February 2011 diff hist +6 Releasing an assembly →Check the .2bit files
- 00:1300:13, 8 February 2011 diff hist −1 m Releasing an assembly →Push /gbdb/$db and html/description.html=
- 00:1300:13, 8 February 2011 diff hist −25 Releasing an assembly →Push files
- 00:0900:09, 8 February 2011 diff hist −4 Releasing an assembly →=genomeClade and gdbPdb
- 00:0800:08, 8 February 2011 diff hist −2 Releasing an assembly →genomeClade and gdbPdb
7 February 2011
- 23:5823:58, 7 February 2011 diff hist −3 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +28 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +20 Releasing an assembly →blatServers
- 23:4823:48, 7 February 2011 diff hist −194 Releasing an assembly →blatServers
- 23:4423:44, 7 February 2011 diff hist +2 Releasing an assembly →dbDb
- 23:4223:42, 7 February 2011 diff hist +29 Releasing an assembly →Push chain/net tables in other organisms
- 23:4123:41, 7 February 2011 diff hist −9 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3923:39, 7 February 2011 diff hist −27 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3823:38, 7 February 2011 diff hist +5 Releasing an assembly →Check if chromosome sizes have changed significantly
- 23:3423:34, 7 February 2011 diff hist −9 Releasing an assembly →Send email to markd and Jeltje van Baren: jeltje at cse.wustl.edu so that they can being doing their N-Scan predictions
- 23:3223:32, 7 February 2011 diff hist −3 Releasing an assembly →Check that there the chain/nets and liftOvers listed in the pushQ are to valid assemblies on the RR
2 February 2011
- 19:2219:22, 2 February 2011 diff hist +1 m Replacing old tables with new ones →Example: adding a -N to the mysql command so that you don't get the table title in the file
20 January 2011
- 22:0022:00, 20 January 2011 diff hist +228 m Working with branches in Git →How do I make a branch?: adding clarification as to why you should preface your branch name with your user name
- 21:5821:58, 20 January 2011 diff hist −16 m Working with branches in Git →How do I make a branch?: removing confusing comment about "noted above"
19 January 2011
- 23:4623:46, 19 January 2011 diff hist −8 m Releasing an assembly →Next day follow-up
- 23:4523:45, 19 January 2011 diff hist −4 m Releasing an assembly →Enable Assembly on RR and post-release follow-up: formatting
- 23:4423:44, 19 January 2011 diff hist −3 m Releasing an assembly →Stage assembly on Round Robin: formatting
- 23:4423:44, 19 January 2011 diff hist −8 m Releasing an assembly →Verify the downloads: formatting
- 23:3523:35, 19 January 2011 diff hist −1 m Releasing an assembly →Check that all of the MySQL tables are in good repair: formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Make sure that there is a liftOver file from the previous assembly to this assembly: formatting
- 23:3423:34, 19 January 2011 diff hist −9 m Releasing an assembly →Check to make sure that none of the table names have underscores(_): formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Check indices: formatting
- 23:3323:33, 19 January 2011 diff hist −2 m Releasing an assembly →Check that all tables in this database are mentioned in all.joiner=: formatting
- 23:3323:33, 19 January 2011 diff hist 0 m Releasing an assembly →Check that common keys between tables are in sync: formatting
- 23:3223:32, 19 January 2011 diff hist −2 m Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway: formatting
- 23:3123:31, 19 January 2011 diff hist −2 Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 23:3123:31, 19 January 2011 diff hist −2 m Releasing an assembly →Turn on GenBank updates: formatting
- 23:3023:30, 19 January 2011 diff hist −1 m Releasing an assembly →Make trackDb on hgwbeta: formatting
- 23:3023:30, 19 January 2011 diff hist −2 m Releasing an assembly →Push image file to hgwbeta and rr: formatting
- 23:2223:22, 19 January 2011 diff hist −1 m Releasing an assembly →liftOverChain: formatting
- 23:2123:21, 19 January 2011 diff hist −61 m Releasing an assembly →blatServers: formatting
- 23:2023:20, 19 January 2011 diff hist −1 m Releasing an assembly →dbDb: formatting
- 23:1923:19, 19 January 2011 diff hist −1 m Releasing an assembly →Push chain/net tables in other organisms: formatting
- 23:1923:19, 19 January 2011 diff hist −9 m Releasing an assembly →Create database on hgwbeta and push tables for $db: formatting
- 23:1723:17, 19 January 2011 diff hist −2 m Releasing an assembly →Check if chromosome sizes have changed significantly: formatting
- 23:1123:11, 19 January 2011 diff hist +25,917 N Releasing an assembly New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update assembly, check to see if chromosome sizes have changed ...
14 January 2011
- 23:4423:44, 14 January 2011 diff hist +25 BlastTabs adding browserQA category link
- 00:5400:54, 14 January 2011 diff hist +2 m CGI Build Process changed reference to two-week schedule to be three-week schedule
- 00:0900:09, 14 January 2011 diff hist +96 Working with Git →'git log [path/fileName]': adding a bit of clarification to Galt's edit
13 January 2011
- 19:4419:44, 13 January 2011 diff hist +33 m CGI Testing →hgGene
12 January 2011
- 01:2601:26, 12 January 2011 diff hist +9 Working with branches in Git →How do I share my branch with others for team development?
- 01:2501:25, 12 January 2011 diff hist +86 Working with branches in Git →Three types of projects you might to do in a development branch
- 01:2401:24, 12 January 2011 diff hist +1 Working with branches in Git →Why use branches
- 01:2401:24, 12 January 2011 diff hist −1,017 Working with branches in Git →Introduction
- 01:2301:23, 12 January 2011 diff hist +580 Working with branches in Git →How we use branches in our group
- 01:1701:17, 12 January 2011 diff hist +346 Working with branches in Git →The nitty gritty
- 01:1601:16, 12 January 2011 diff hist +4 Working with branches in Git →How do I ...
- 01:0801:08, 12 January 2011 diff hist −21 Working with branches in Git →How do I share my branch with others for team development?
- 01:0201:02, 12 January 2011 diff hist +170 Working with branches in Git →How do I share my branch with others for team development?
- 00:3200:32, 12 January 2011 diff hist +9 Working with branches in Git →FAQ
