User contributions for Marygoldman
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25 February 2011
- 00:1100:11, 25 February 2011 diff hist +1 Conservation Track QA →Test in the tables
- 00:1100:11, 25 February 2011 diff hist +1 Conservation Track QA →Test in the Genome Browser
- 00:1100:11, 25 February 2011 diff hist +2 Conservation Track QA →Figure out extFile and seq tables
- 00:1000:10, 25 February 2011 diff hist +2 Conservation Track QA →Check multizway#wayFrames table
- 00:1000:10, 25 February 2011 diff hist −2,820 Conservation Track QA →Preparing to QA
- 00:0800:08, 25 February 2011 diff hist +2,586 Conservation Track QA →Preparing to QA
- 00:0300:03, 25 February 2011 diff hist +20 Conservation Track QA →Make a list of all organisms for which there are nets & chains:
- 00:0200:02, 25 February 2011 diff hist +2 Conservation Track QA →Make sure that pushQ entry has all gbdb files and downloads needed for the track
- 00:0200:02, 25 February 2011 diff hist −221 Conservation Track QA →Make a list of all organisms in the Conservation track:
- 00:0000:00, 25 February 2011 diff hist +4 Conservation Track QA →Pre-QA prep
24 February 2011
- 23:1423:14, 24 February 2011 diff hist +161 Conservation Track QA →QAing Conservation and Most Conserved tracks for a new assembly
23 February 2011
- 19:5919:59, 23 February 2011 diff hist +94 Releasing an assembly →Pre-staging of assembly on hgwbeta: adding bit to claim main pushQ entry
22 February 2011
- 22:5722:57, 22 February 2011 diff hist −5 Releasing an assembly →Push the database and tables from hgwdev to hgwbeta
- 19:3019:30, 22 February 2011 diff hist −80 Releasing an assembly →Announce the Release on genome-announce@soe.ucsc.edu and genecats@soe.ucsc.edu
- 19:2919:29, 22 February 2011 diff hist −7 Releasing an assembly →Verify downloads
- 19:2819:28, 22 February 2011 diff hist 0 Releasing an assembly →Stage assembly on Round Robin
- 19:2819:28, 22 February 2011 diff hist −124 Releasing an assembly →Ensure the active column in hgcentral.dbDb is set to 0
- 19:2619:26, 22 February 2011 diff hist −116 Releasing an assembly →Enable Assembly on RR and post-release follow-up
14 February 2011
- 22:5322:53, 14 February 2011 diff hist −526 Releasing an assembly →Chain/Nets/LiftOvers from other organisms
- 22:3822:38, 14 February 2011 diff hist +223 Releasing an assembly →blatServers, genomeClade, gdbPdb (NOT liftOver)
- 22:3422:34, 14 February 2011 diff hist +166 Releasing an assembly →Review all tracks in the sub-pushQ
8 February 2011
- 02:0102:01, 8 February 2011 diff hist +40 Releasing an assembly →If the new assembly is an update to the human, mouse, rat, zebrafish, D. melanogaster, C. elegans, or S. cerevisiae genomes, make sure that the appropriate blastTab tables to this assembly are built
- 02:0002:00, 8 February 2011 diff hist +50 Releasing an assembly →Check the release log
- 02:0002:00, 8 February 2011 diff hist +78 Releasing an assembly →Enable Assembly on RR and post-release follow-up
- 01:5901:59, 8 February 2011 diff hist −164 Releasing an assembly →Next day follow-up
- 01:5401:54, 8 February 2011 diff hist +265 Releasing an assembly →You may need to update all.joiner for the RR
- 01:5201:52, 8 February 2011 diff hist +60 Releasing an assembly →Update hgcentral.sql for mirrors
- 01:5001:50, 8 February 2011 diff hist −109 Releasing an assembly →Announce the Release on genome@soe.ucsc.edu and genecats@soe.ucsc.edu
- 01:4901:49, 8 February 2011 diff hist +100 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4701:47, 8 February 2011 diff hist −95 Releasing an assembly →Push Static Content from hgwdev to hgwbeta and Round Robin
- 01:4601:46, 8 February 2011 diff hist +116 Releasing an assembly →Figure out if either you or Donna is going to edit the static docs
- 01:4401:44, 8 February 2011 diff hist +44 Releasing an assembly →Turn on genome-mysql
- 01:4001:40, 8 February 2011 diff hist −57 Releasing an assembly →Confirm that downloads and currentGenome are functional
- 01:4001:40, 8 February 2011 diff hist +60 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3901:39, 8 February 2011 diff hist +55 Releasing an assembly →Push Downloads from hgwdev to hgdownload
- 01:3801:38, 8 February 2011 diff hist +1 Releasing an assembly →Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
- 01:3601:36, 8 February 2011 diff hist +41 Releasing an assembly →Remove assembly from mirror "exclude" list
- 01:3501:35, 8 February 2011 diff hist +65 Releasing an assembly →Verify again that everything is working as expected on the RR
- 01:3501:35, 8 February 2011 diff hist −82 Releasing an assembly →Enable Assembly on RR and post-release follow-up
- 01:3401:34, 8 February 2011 diff hist +61 Releasing an assembly →Chain/Nets to other organisms
- 01:3101:31, 8 February 2011 diff hist +72 Releasing an assembly →Set active=1 in hgcentral
- 01:3001:30, 8 February 2011 diff hist −17 Releasing an assembly →Test the assembly tracks, BLAT and PCR on the RR
- 01:2401:24, 8 February 2011 diff hist −44 Releasing an assembly →Request dump and autodump of database
- 01:2201:22, 8 February 2011 diff hist −37 Releasing an assembly →Turn on genbank updates on the RR
- 01:2201:22, 8 February 2011 diff hist +147 Releasing an assembly →Turn on genbank updates on the RR
- 01:2001:20, 8 February 2011 diff hist −7 Releasing an assembly →Update hgcentral
- 01:1901:19, 8 February 2011 diff hist +201 Releasing an assembly →Update hgcentral
- 01:1501:15, 8 February 2011 diff hist −1 Releasing an assembly →rsync /gbdb again as necessary
- 01:1401:14, 8 February 2011 diff hist −1 Releasing an assembly →Request rsync of entire database from push-request
- 01:1401:14, 8 February 2011 diff hist +100 Releasing an assembly →Request rsync of entire database from push-request
- 01:1101:11, 8 February 2011 diff hist −2 Releasing an assembly →Adjust the release log in main pushQ
- 01:1101:11, 8 February 2011 diff hist +7 Releasing an assembly →Email warning genome-mirror at least 24 hours before release
- 01:1001:10, 8 February 2011 diff hist +9 Releasing an assembly →Make sure no tables need to be repushed from hgwdev to hgwbeta
- 01:0901:09, 8 February 2011 diff hist +135 Releasing an assembly →Stage assembly on Round Robin
- 01:0401:04, 8 February 2011 diff hist +140 Releasing an assembly →Verify that liftOvers are in liftOvers directories and not in vs* Directories
- 01:0101:01, 8 February 2011 diff hist −13 Releasing an assembly →Verify downloads
- 00:5800:58, 8 February 2011 diff hist +42 Releasing an assembly →Check Blat and PCR
- 00:5500:55, 8 February 2011 diff hist +1 Releasing an assembly →Check that all of the MySQL tables are in good repair
- 00:5400:54, 8 February 2011 diff hist +2 Releasing an assembly →Check to make sure that none of the table names have underscores(_)
- 00:5400:54, 8 February 2011 diff hist −7 Releasing an assembly →Run featureBits to verify that the gold and gap tables together cover the entire genome
- 00:5300:53, 8 February 2011 diff hist −1 Releasing an assembly →Check indices
- 00:5200:52, 8 February 2011 diff hist +31 Releasing an assembly →Check indices
- 00:5000:50, 8 February 2011 diff hist +1 Releasing an assembly →Check that all tables in this database are mentioned in all.joiner
- 00:5000:50, 8 February 2011 diff hist +4 Releasing an assembly →joinerCheck
- 00:2600:26, 8 February 2011 diff hist −3 Releasing an assembly →Turn on GenBank updates
- 00:2000:20, 8 February 2011 diff hist +1 m Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 00:2000:20, 8 February 2011 diff hist +103 Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway
- 00:1800:18, 8 February 2011 diff hist −6 m Releasing an assembly →Test on hgwbeta: re-ordering list
- 00:1600:16, 8 February 2011 diff hist +6 Releasing an assembly →Check the .2bit files
- 00:1300:13, 8 February 2011 diff hist −1 m Releasing an assembly →Push /gbdb/$db and html/description.html=
- 00:1300:13, 8 February 2011 diff hist −25 Releasing an assembly →Push files
- 00:0900:09, 8 February 2011 diff hist −4 Releasing an assembly →=genomeClade and gdbPdb
- 00:0800:08, 8 February 2011 diff hist −2 Releasing an assembly →genomeClade and gdbPdb
7 February 2011
- 23:5823:58, 7 February 2011 diff hist −3 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +28 Releasing an assembly →blatServers
- 23:4923:49, 7 February 2011 diff hist +20 Releasing an assembly →blatServers
- 23:4823:48, 7 February 2011 diff hist −194 Releasing an assembly →blatServers
- 23:4423:44, 7 February 2011 diff hist +2 Releasing an assembly →dbDb
- 23:4223:42, 7 February 2011 diff hist +29 Releasing an assembly →Push chain/net tables in other organisms
- 23:4123:41, 7 February 2011 diff hist −9 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3923:39, 7 February 2011 diff hist −27 Releasing an assembly →Create database on hgwbeta and push tables for $db
- 23:3823:38, 7 February 2011 diff hist +5 Releasing an assembly →Check if chromosome sizes have changed significantly
- 23:3423:34, 7 February 2011 diff hist −9 Releasing an assembly →Send email to markd and Jeltje van Baren: jeltje at cse.wustl.edu so that they can being doing their N-Scan predictions
- 23:3223:32, 7 February 2011 diff hist −3 Releasing an assembly →Check that there the chain/nets and liftOvers listed in the pushQ are to valid assemblies on the RR
2 February 2011
- 19:2219:22, 2 February 2011 diff hist +1 m Replacing old tables with new ones →Example: adding a -N to the mysql command so that you don't get the table title in the file
20 January 2011
- 22:0022:00, 20 January 2011 diff hist +228 m Working with branches in Git →How do I make a branch?: adding clarification as to why you should preface your branch name with your user name
- 21:5821:58, 20 January 2011 diff hist −16 m Working with branches in Git →How do I make a branch?: removing confusing comment about "noted above"
19 January 2011
- 23:4623:46, 19 January 2011 diff hist −8 m Releasing an assembly →Next day follow-up
- 23:4523:45, 19 January 2011 diff hist −4 m Releasing an assembly →Enable Assembly on RR and post-release follow-up: formatting
- 23:4423:44, 19 January 2011 diff hist −3 m Releasing an assembly →Stage assembly on Round Robin: formatting
- 23:4423:44, 19 January 2011 diff hist −8 m Releasing an assembly →Verify the downloads: formatting
- 23:3523:35, 19 January 2011 diff hist −1 m Releasing an assembly →Check that all of the MySQL tables are in good repair: formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Make sure that there is a liftOver file from the previous assembly to this assembly: formatting
- 23:3423:34, 19 January 2011 diff hist −9 m Releasing an assembly →Check to make sure that none of the table names have underscores(_): formatting
- 23:3423:34, 19 January 2011 diff hist −2 m Releasing an assembly →Check indices: formatting
- 23:3323:33, 19 January 2011 diff hist −2 m Releasing an assembly →Check that all tables in this database are mentioned in all.joiner=: formatting
- 23:3323:33, 19 January 2011 diff hist 0 m Releasing an assembly →Check that common keys between tables are in sync: formatting
- 23:3223:32, 19 January 2011 diff hist −2 m Releasing an assembly →Review phylogenetic location in pull-down menus on hgGateway: formatting
- 23:3123:31, 19 January 2011 diff hist −2 Releasing an assembly →Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
- 23:3123:31, 19 January 2011 diff hist −2 m Releasing an assembly →Turn on GenBank updates: formatting