User contributions for Rhead

14 May 2013

• 22:2822:28, 14 May 2013 diff hist −112‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: removed sentence about demo version being mockup-only
• 21:3621:36, 14 May 2013 diff hist −4‎ m Presentations ‎ →‎2013

9 May 2013

• 17:5317:53, 9 May 2013 diff hist +300‎ Presentations ‎ Added biology of genomes poster.
• 04:0804:08, 9 May 2013 diff hist +230‎ BoG2013VariationPoster ‎ →‎Usage tips: added the eventual output formats

8 May 2013

• 17:5017:50, 8 May 2013 diff hist +148‎ BoG2013VariationPoster ‎ →‎Other posters about the UCSC Genome Browser: added link to hiram's genomewiki page
• 17:4417:44, 8 May 2013 diff hist +22‎ BoG2013VariationPoster ‎ →‎Usage tips: cleaned up output format
• 14:2614:26, 8 May 2013 diff hist +1,016‎ BoG2013VariationPoster ‎ →‎Usage tips: added to VAI section

7 May 2013

• 17:1317:13, 7 May 2013 diff hist +519‎ BoG2013VariationPoster ‎ →‎Usage tips: more organization for VAI usage
• 16:4416:44, 7 May 2013 diff hist +111‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: pointed out that the current demo version doesn't do anything yet
• 16:3316:33, 7 May 2013 diff hist +80‎ BoG2013VariationPoster ‎ added link to sample pgSnp track from poster
• 16:3116:31, 7 May 2013 diff hist 0‎ N File:BoG2013variationSampleTrack.txt ‎No edit summary current
• 16:2016:20, 7 May 2013 diff hist −15‎ m BoG2013VariationPoster ‎No edit summary
• 16:1416:14, 7 May 2013 diff hist 0‎ File:BoG2013variation.pdf ‎ uploaded a new version of "File:BoG2013variation.pdf" current
• 16:1316:13, 7 May 2013 diff hist 0‎ File:BoG2013variation.pptx ‎ uploaded a new version of "File:BoG2013variation.pptx" current

3 May 2013

• 23:5723:57, 3 May 2013 diff hist +338‎ BoG2013VariationPoster ‎ →‎Usage tips: started fleshing out usage tips
• 22:4822:48, 3 May 2013 diff hist +35‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: re-saved session to include sample data from poster

2 May 2013

• 22:2922:29, 2 May 2013 diff hist +33‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: added link to PDF
• 22:2722:27, 2 May 2013 diff hist 0‎ N File:BoG2013variation.pdf ‎No edit summary
• 22:2522:25, 2 May 2013 diff hist 0‎ File:BoG2013variation.pptx ‎ uploaded a new version of "File:BoG2013variation.pptx"

1 May 2013

• 07:0207:02, 1 May 2013 diff hist 0‎ File:BoG2013variation.pptx ‎ uploaded a new version of "File:BoG2013variation.pptx"
• 06:5606:56, 1 May 2013 diff hist +9‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: wording
• 06:5406:54, 1 May 2013 diff hist −10‎ BoG2013VariationPoster ‎ organized, changed headers
• 06:4806:48, 1 May 2013 diff hist 0‎ File:BoG2013variationAbstract.txt ‎ uploaded a new version of "File:BoG2013variationAbstract.txt" current
• 06:4706:47, 1 May 2013 diff hist 0‎ File:BoG2013variationAbstract.txt ‎ uploaded a new version of "File:BoG2013variationAbstract.txt"
• 01:2601:26, 1 May 2013 diff hist +426‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: adding sections; link to pgSnp page
• 01:1401:14, 1 May 2013 diff hist +98‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: changed link to demo1 to a session with a custom track pre-loaded
• 01:0901:09, 1 May 2013 diff hist +49‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: added link to demo1
• 01:0501:05, 1 May 2013 diff hist +45‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: added link to abstract
• 00:5500:55, 1 May 2013 diff hist 0‎ N File:BoG2013variationAbstract.txt ‎No edit summary
• 00:5200:52, 1 May 2013 diff hist 0‎ File:BoG2013variation.pptx ‎ uploaded a new version of "File:BoG2013variation.pptx"

26 April 2013

• 23:3523:35, 26 April 2013 diff hist +738‎ BoG2013VariationPoster ‎ →‎Common Gene Haplotype Alleles: tried to make methods more clear, added notes about scoring and the reference variant, added scoring section
• 19:3219:32, 26 April 2013 diff hist +216‎ BoG2013VariationPoster ‎ →‎Common Gene Haplotype Alleles: reworded some gene haplotype allele points with suggestions from Tim
• 01:5201:52, 26 April 2013 diff hist 0‎ File:BoG2013variation.pptx ‎ uploaded a new version of "File:BoG2013variation.pptx"

25 April 2013

• 19:0719:07, 25 April 2013 diff hist +5‎ m BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: changed link to Browser

24 April 2013

• 06:2606:26, 24 April 2013 diff hist +34‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: linked to .pptx
• 06:2306:23, 24 April 2013 diff hist +89‎ N File:BoG2013variation.pptx ‎ Poster presented at Biology of Genomes meeting in Cold Spring Harbor, NY, May 7-11, 2013.
• 06:1806:18, 24 April 2013 diff hist +13‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser
• 06:1306:13, 24 April 2013 diff hist +1,437‎ BoG2013VariationPoster ‎ →‎Common Gene Haplotype Alleles: first draft of supplementary info for haplotype alleles
• 01:5601:56, 24 April 2013 diff hist +2‎ m BoG2013VariationPoster ‎ →‎Common Gene Haplotype Alleles

23 April 2013

• 01:0401:04, 23 April 2013 diff hist −2‎ m BoG2013VariationPoster ‎No edit summary

22 April 2013

• 23:0923:09, 22 April 2013 diff hist +5‎ BoG2013VariationPoster ‎ →‎Common Allele Haplotypes: switched order of wording in section to match what's on hgGene currently
• 22:5022:50, 22 April 2013 diff hist +245‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: introductory sentences; placeholder for link to VAI
• 22:4022:40, 22 April 2013 diff hist −85‎ BoG2013VariationPoster ‎ →‎Poster: New variation resources at the UCSC Genome Browser: took out links to angie's poster
• 22:4022:40, 22 April 2013 diff hist +84‎ BoG2013VariationPoster ‎ →‎Common Allele Haplotypes: note to say this is restricted to hg19 protein-coding

20 April 2013

• 01:1401:14, 20 April 2013 diff hist +293‎ BoG2013VariationPoster ‎ →‎Common Allele Haplotypes: Linked to session with only UCSC Genes turned on in demo sandbox.
• 00:5900:59, 20 April 2013 diff hist +1,270‎ BoG2013VariationPoster ‎ →‎Variant Annotation Integrator: Angie's description of the VAI
• 00:5700:57, 20 April 2013 diff hist +3‎ m BoG2013VariationPoster ‎ →‎Other posters about the UCSC Genome Browser

19 April 2013

• 01:5201:52, 19 April 2013 diff hist +1,772‎ N BoG2013VariationPoster ‎ start of Biology of Genomes 2013 poster page, mostly stolen from Angie's 2012 BoG page

6 April 2013

• 01:1101:11, 6 April 2013 diff hist +180‎ Enabling hgLogin ‎ →‎Enabling hgLogin: clarified the instruction to leave cookie names the same as they were on genomewiki (RM #9662) current

27 March 2013

• 00:4500:45, 27 March 2013 diff hist +5‎ m Enabling hgLogin ‎ →‎Enabling hgLogin: grammar tweak

18 June 2012

• 21:4921:49, 18 June 2012 diff hist −47‎ Other genome browsers ‎ →‎Non-UCSC (genome.ucsc.edu) Browsers: re-worded redundant sentence

30 May 2012

• 00:0600:06, 30 May 2012 diff hist +622‎ ThreeStateTrackDb ‎ Added notes about hgFindSpec support, from http://redmine.soe.ucsc.edu/issues/7334#note-20.

11 January 2012

• 23:2523:25, 11 January 2012 diff hist +178‎ Presentations ‎ Added 2012 section and Brooke Rhead QA Genecats slides
• 23:1523:15, 11 January 2012 diff hist +48‎ N File:QaReleaseProcess.pdf ‎ 1-11-2012 Genecats on QA release process. (pdf) current
• 23:1323:13, 11 January 2012 diff hist +80‎ N File:QaReleaseProcess.pptx ‎ 1-11-2012 Genecats presentation on the current QA release process. (powerPoint) current

13 October 2011

• 22:0622:06, 13 October 2011 diff hist +1‎ Spreadsheet links to Genome Browser views ‎ →‎Customizing the links: changed omimGene to omimGene2

16 September 2011

• 18:5318:53, 16 September 2011 diff hist −965‎ ThreeStateTrackDb ‎ Removed migration plan.

16 August 2011

• 00:3700:37, 16 August 2011 diff hist +51‎ Finding nearby genes ‎ made galaxy alternative a link and changed tool to its actual name on that site

11 August 2011

• 22:1122:11, 11 August 2011 diff hist +219‎ Nm User talk:Bettina Kempkes ‎ Welcome! current
• 22:1122:11, 11 August 2011 diff hist +14‎ Nm User:Bettina Kempkes ‎ Creating user page with biography of new user. current

9 August 2011

• 23:3423:34, 9 August 2011 diff hist +218‎ Nm User talk:Verónica ponce ‎ Welcome! current
• 23:3423:34, 9 August 2011 diff hist +476‎ Nm User:Verónica ponce ‎ Creating user page with biography of new user. current

3 March 2011

• 03:0603:06, 3 March 2011 diff hist +36‎ Pushing trackDb ‎ adding the phrase "trackDb and friends"

1 March 2011

• 20:0120:01, 1 March 2011 diff hist +38‎ Windows testing machine ‎ →‎Logging in from Linux: bold some text for people who rtfm'd and still didn't get it

25 February 2011

• 02:2802:28, 25 February 2011 diff hist +111‎ SNP Track QA ‎ check for masked fasta downloads on human
• 00:4500:45, 25 February 2011 diff hist −649‎ SNP Track QA ‎ cutting out instructions that are generic

21 February 2011

• 03:1703:17, 21 February 2011 diff hist +157‎ Releasing an assembly ‎ →‎Check the release log: added note about editing
• 03:1303:13, 21 February 2011 diff hist +109‎ Releasing an assembly ‎ →‎Check the Genbank is running: added a check of gbLoaded table
• 03:1003:10, 21 February 2011 diff hist +54‎ Releasing an assembly ‎ →‎You may need to update all.joiner for the RR: more details
• 03:0303:03, 21 February 2011 diff hist +217‎ Releasing an assembly ‎ →‎Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes: more detailed instructions
• 02:5302:53, 21 February 2011 diff hist −76‎ Releasing an assembly ‎ →‎Push Downloads from hgwdev to hgdownload: simplified
• 02:5202:52, 21 February 2011 diff hist +27‎ Releasing an assembly ‎ →‎Announce the Release on genome@soe.ucsc.edu and genecats@soe.ucsc.edu: Announce on genome-announce instead of genome.
• 02:4902:49, 21 February 2011 diff hist +39‎ Releasing an assembly ‎ →‎Test the assembly tracks, BLAT and PCR on the RR: added liftover, wording change
• 02:4102:41, 21 February 2011 diff hist +176‎ Releasing an assembly ‎ →‎Adjust the release log in main pushQ: added note about getting track names, linked to release log
• 02:3602:36, 21 February 2011 diff hist +137‎ Releasing an assembly ‎ reordered genbank updates, dump/autodump of database and updating hgcentral steps
• 02:2702:27, 21 February 2011 diff hist −5‎ m Releasing an assembly ‎ →‎Update hgcentral
• 02:2302:23, 21 February 2011 diff hist +12‎ m Releasing an assembly ‎ →‎Update hgcentralbeta
• 02:2102:21, 21 February 2011 diff hist +143‎ Releasing an assembly ‎ →‎Update hgcentralbeta: added note about saving metadata files
• 02:1702:17, 21 February 2011 diff hist 0‎ m Releasing an assembly ‎ →‎double-check /gbdb files
• 02:1702:17, 21 February 2011 diff hist −1‎ m Releasing an assembly ‎ →‎=Ensure the active column in hgcentral.dbDb is set to 0
• 02:1602:16, 21 February 2011 diff hist +13‎ Releasing an assembly ‎ changed the order of ensuring active=0, checking /gbdb files, and adjusting the release log
• 02:0902:09, 21 February 2011 diff hist −14‎ Releasing an assembly ‎ →‎Check that all /gbdb files are present: make title match contents
• 02:0802:08, 21 February 2011 diff hist +162‎ Releasing an assembly ‎ →‎rsync /gbdb again as necessary: More explicit instructions. Don't necessarily want files to be the same as on hgwdev.
• 01:5601:56, 21 February 2011 diff hist +20‎ Releasing an assembly ‎ →‎Request rsync of entire database from push-request: Added note to check active=0, simplified the rest.
• 01:4601:46, 21 February 2011 diff hist +276‎ Releasing an assembly ‎ →‎Email warning to genome-mirror at least 24 hours before release: a couple of extra notes about finding sizes
• 01:3601:36, 21 February 2011 diff hist +1‎ m Releasing an assembly ‎ →‎Figure out if either you or Donna is going to edit the static docs
• 01:3501:35, 21 February 2011 diff hist +16‎ Releasing an assembly ‎ →‎Verify downloads: little wording/punc. changes
• 01:2001:20, 21 February 2011 diff hist −16‎ Releasing an assembly ‎ →‎Review all tracks in the sub-pushQ: took out redundant wording
• 01:1901:19, 21 February 2011 diff hist +1‎ m Releasing an assembly ‎ →‎Verify blastTabs are updated if needed
• 01:1801:18, 21 February 2011 diff hist +3‎ Releasing an assembly ‎ →‎Run featureBits to verify that the gold and gap tables together cover the entire genome: formatting
• 01:1601:16, 21 February 2011 diff hist +2‎ Releasing an assembly ‎ →‎Verify makedoc for all the tracks listed in the pushQ: access the database from mysqlbeta (not necessarily hgwbeta)
• 01:1101:11, 21 February 2011 diff hist −35‎ Releasing an assembly ‎ →‎liftOverChain: making it less wordy

18 February 2011

• 02:0702:07, 18 February 2011 diff hist +140‎ Releasing an assembly ‎ →‎Check that it is not symlink on hgnfs1 and that there is only one file and is not in a subdirectory
• 02:0002:00, 18 February 2011 diff hist +66‎ m Releasing an assembly ‎ →‎Turn on GenBank updates
• 01:5501:55, 18 February 2011 diff hist +39‎ Releasing an assembly ‎ →‎Push image file to hgwbeta and rr: added note about where to push from
• 01:4401:44, 18 February 2011 diff hist +38‎ Releasing an assembly ‎ →‎Push /gbdb/$db and html/description.html: little note about downloads
• 01:3701:37, 18 February 2011 diff hist −8‎ Releasing an assembly ‎ →‎liftOverChain: still had a specific example in there!
• 01:3601:36, 18 February 2011 diff hist +5‎ m Releasing an assembly ‎ →‎liftOverChain
• 01:3501:35, 18 February 2011 diff hist −34‎ Releasing an assembly ‎ →‎liftOverChain
• 01:2501:25, 18 February 2011 diff hist +8‎ Releasing an assembly ‎ →‎dbDb: fixed one spot that said beta where it should say test
• 01:1701:17, 18 February 2011 diff hist +50‎ Releasing an assembly ‎ →‎Push chain/net tables in other organisms: reword
• 00:2200:22, 18 February 2011 diff hist −10‎ Releasing an assembly ‎ →‎Create database on hgwbeta and push tables for $db: tweaked filenames so lines can be copied and pasted
• 00:1900:19, 18 February 2011 diff hist −47‎ Releasing an assembly ‎ →‎Add assembly to mirror exclude list: only root can write to the mirror exclude list...

17 February 2011

• 23:3823:38, 17 February 2011 diff hist +2‎ m Releasing an assembly ‎ →‎Check that any chain/net/liftOvers listed in the pushQ are to valid assemblies on the RR
• 23:3823:38, 17 February 2011 diff hist −131‎ Releasing an assembly ‎ →‎Check that there the chain/nets/liftOvers listed in the pushQ are to valid assemblies on the RR

16 February 2011

• 00:3200:32, 16 February 2011 diff hist +676‎ Genbank updates ‎No edit summary

10 February 2011

• 23:3023:30, 10 February 2011 diff hist +10‎ CGI Build Process ‎ →‎Push to hgwN only: added hgFileUi
• 22:4422:44, 10 February 2011 diff hist +2‎ Releasing an assembly ‎ →‎Chain/Nets/LiftOvers to other organisms: this part really just describes nets/chains/lifts to the new org
• 22:1222:12, 10 February 2011 diff hist −3‎ m Releasing an assembly ‎ →‎Stage on assembly on hgwbeta

8 February 2011

• 20:4520:45, 8 February 2011 diff hist +323‎ Releasing an assembly ‎ →‎Chain/Nets to other organisms: reorganized section

4 February 2011

• 00:0500:05, 4 February 2011 diff hist +202‎ Chains and Nets QA ‎ →‎After QAing on hgwbeta: Pushing to the RR: added a note to check downloads file and md5sum

1 February 2011

• 00:1100:11, 1 February 2011 diff hist +219‎ m GenomeAnnotation:hg19-10317 ‎No edit summary current
• 00:1000:10, 1 February 2011 diff hist −413‎ UCSCGeneAnnotation:hg19-10319 ‎ removed test. current
• 00:0900:09, 1 February 2011 diff hist +413‎ Nm UCSCGeneAnnotation:hg19-10319 ‎ New page: Category:Genome Annotation Canonical gene details [http://genome.cse.ucsc.edu/cgi-bin/hgGene?hgg_chrom=none&org=Human&db=0&hgg_gene=uc003ysa.1 AK125310 uc003ysa.1]<BR> <B>Description:<...
• 00:0300:03, 1 February 2011 diff hist +332‎ Nm GenomeAnnotation:hg19-10317 ‎ New page: Category:Genome Annotation [http://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19&wikiTrack=pack&position=chr8:128246689-128247138 hg19 chr8:128,246,689-128,247,138]  <B>'Brook...

31 January 2011

• 22:2822:28, 31 January 2011 diff hist +216‎ m GenomeAnnotation:hg18-10315 ‎No edit summary current
• 22:2722:27, 31 January 2011 diff hist +292‎ Nm GenomeAnnotation:hg18-10315 ‎ New page: Category:Genome Annotation [http://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=hg18&wikiTrack=pack&position=chrX:150151892-150188311 hg18 chrX:150,151,892-150,188,311]  <B>'Brook...

27 January 2011

• 23:5023:50, 27 January 2011 diff hist +78‎ CGI Testing ‎ →‎hgTracks

26 January 2011

• 02:5102:51, 26 January 2011 diff hist +793‎ ThreeStateTrackDb ‎ added a section about super-tracks

22 January 2011

• 01:3701:37, 22 January 2011 diff hist +296‎ Nm GenomeAnnotation:hg18-401 ‎ New page: Category:Genome Annotation [http://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=hg18&wikiTrack=pack&position=chrX:150762131-151694899 hg18 chrX:150,762,131-151,694,899]  <B>'brook... current

20 January 2011

• 00:0300:03, 20 January 2011 diff hist +5‎ m Releasing an assembly ‎ →‎Update hgcentralbeta: bold checkMetaData.csh

13 December 2010

• 21:3121:31, 13 December 2010 diff hist +500‎ CGI Testing ‎ →‎hgTracks: added more about TrackCheck, hgw0, and the new error when the image is too high

9 December 2010

• 01:1701:17, 9 December 2010 diff hist +650‎ CGI Testing ‎ →‎hgGene: Updated!
• 00:5500:55, 9 December 2010 diff hist +45‎ CGI Testing ‎ →‎hgPal: Clarified that there are 3 ways to get to hgPal.
• 00:5300:53, 9 December 2010 diff hist +225‎ CGI Testing ‎ →‎hgTracks: added a link to TrackCheck instructions
• 00:4800:48, 9 December 2010 diff hist +842‎ CGI Testing ‎ →‎track search: Added instructions from Katrina

2 December 2010

• 01:5801:58, 2 December 2010 diff hist +50‎ CGI Testing ‎ →‎hgGenome: added a check and directions for finding CGI
• 01:5201:52, 2 December 2010 diff hist +294‎ CGI Testing ‎ →‎hgLiftOver, hgConvert: a start of testing liftOver and convert -- please add to it!
• 01:1301:13, 2 December 2010 diff hist +197‎ CGI Testing ‎ added link to version notes

23 November 2010

• 00:4000:40, 23 November 2010 diff hist +321‎ New track checklist ‎ →‎Push to hgwbeta: Added a note about opening existing tracks on beta before staging them.

8 November 2010

• 07:0207:02, 8 November 2010 diff hist +1‎ m New track checklist ‎ →‎Downloads
• 07:0107:01, 8 November 2010 diff hist +839‎ New track checklist ‎ →‎Downloads: added instructions for pushing downloads

4 November 2010

• 21:4121:41, 4 November 2010 diff hist +14‎ Pushing trackDb ‎ →‎Files: cv.ra actually lives within the encode dir

2 November 2010

• 07:1307:13, 2 November 2010 diff hist +3‎ m ThreeStateTrackDb ‎ tiny typos

29 October 2010

• 21:4421:44, 29 October 2010 diff hist −4‎ Pushing trackDb ‎ →‎Files
• 21:2621:26, 29 October 2010 diff hist −161‎ Pushing trackDb ‎ →‎Files: changing cv.ra instruction now that brian is implementing alpha/beta/public
• 01:3401:34, 29 October 2010 diff hist +44‎ Pushing trackDb ‎ →‎Files: added victoria's suggestion to push cv.ra to hgwbeta-public for now
• 01:2801:28, 29 October 2010 diff hist +49‎ Pushing trackDb ‎ →‎Tables: added caveat that we only need to push the metaDb table if it exists in a db.
• 01:2101:21, 29 October 2010 diff hist +7‎ New track checklist ‎ →‎Tables are sorted and internally consistent
• 01:2001:20, 29 October 2010 diff hist +424‎ New track checklist ‎ →‎Tables are sorted and internally consistent: added more details and changed formatting (thanks, Greg!)
• 00:2300:23, 29 October 2010 diff hist +1,155‎ Pushing trackDb ‎ Added details about trix files

28 October 2010

• 21:1721:17, 28 October 2010 diff hist +68‎ Pushing trackDb ‎No edit summary
• 18:5218:52, 28 October 2010 diff hist −9‎ Pushing trackDb ‎No edit summary

27 October 2010

• 19:2219:22, 27 October 2010 diff hist +824‎ Pushing trackDb ‎ Initial cut.
• 19:0719:07, 27 October 2010 diff hist +577‎ N Pushing trackDb ‎ start of page

21 October 2010

• 22:4622:46, 21 October 2010 diff hist 0‎ Training new Browser Staff ‎ →‎Training person-to-person (in rough chronological order): moved trackDb stuff to a little later
• 22:1922:19, 21 October 2010 diff hist +25‎ File:Browsermap.pdf ‎No edit summary
• 18:5118:51, 21 October 2010 diff hist −5‎ Training new Browser Staff ‎ Removed CVS references and added git and redmine references

18 October 2010

• 05:1205:12, 18 October 2010 diff hist +2‎ Static Page JS Protocol ‎ Changed "push to beta" to "do a make on beta"

14 October 2010

• 20:5920:59, 14 October 2010 diff hist +116‎ CGI Build Process ‎ added style directory instructions for hgwbeta-public
• 19:4019:40, 14 October 2010 diff hist +40‎ CGI Build Process ‎ →‎Push to hgwN only: added the style directory to the push request

17 September 2010

• 00:2800:28, 17 September 2010 diff hist +542‎ New track checklist ‎ added a section for downloads

7 September 2010

• 17:3117:31, 7 September 2010 diff hist +10‎ CGI Build Process ‎ →‎Push to hgwN only: added hgApi

19 August 2010

• 22:0822:08, 19 August 2010 diff hist +168‎ New track checklist ‎ →‎joinerCheck: Added note for location of joiner.doc.

18 August 2010

• 05:1805:18, 18 August 2010 diff hist −78‎ Static Page Protocol ‎ →‎Files Destined for the Round Robin and Mirrors (Public Documents)

13 August 2010

• 00:2700:27, 13 August 2010 diff hist −55‎ Static Page Protocol ‎ →‎Files Destined for the Round Robin and Mirrors (Public Documents): took out redundant and incorrect words!

12 August 2010

• 21:0721:07, 12 August 2010 diff hist +61‎ New track checklist ‎ →‎Push Request: added link to static page protocol

11 August 2010

• 20:1420:14, 11 August 2010 diff hist +196‎ New track checklist ‎ →‎All details: 1 data point: added link to the static page js protocol page
• 19:1819:18, 11 August 2010 diff hist −1,189‎ Working with Git ‎ moved sections up higher. Was done with Mary's approval
• 19:1719:17, 11 August 2010 diff hist +169‎ Working with Git ‎ →‎Fixing un-wanted changes
• 19:1219:12, 11 August 2010 diff hist −59‎ Working with Git ‎ →‎Commit IDs and Referring to ancestors: changed "X" to HEAD... little edits
• 18:5718:57, 11 August 2010 diff hist +3‎ Working with Git ‎ →‎Commit IDs and Referring to ancestors
• 18:5218:52, 11 August 2010 diff hist +9‎ m Working with Git ‎ →‎Commit IDs and Referring to ancestors
• 18:5118:51, 11 August 2010 diff hist +1‎ m Working with Git ‎ →‎Commit IDs and Referring to ancestors
• 18:4918:49, 11 August 2010 diff hist +3‎ m Working with Git ‎ →‎Commit IDs and Referring ancestors
• 18:2618:26, 11 August 2010 diff hist +251‎ New track checklist ‎ →‎Push Request: Added instructions for noting things in repush.html.
• 02:3502:35, 11 August 2010 diff hist +1‎ m Working with Git ‎ →‎'git stash': added "."
• 01:5601:56, 11 August 2010 diff hist +2‎ m Working with Git ‎ →‎'git reset --[option] HEAD': typo
• 01:4001:40, 11 August 2010 diff hist +1‎ m Working with Git ‎ →‎'git commit -m "some message" fileName(s)': added a "."

6 August 2010

• 03:0303:03, 6 August 2010 diff hist +130‎ New track checklist ‎ →‎Searching: Added location of checkHgFindSpec results.

3 August 2010

• 20:4520:45, 3 August 2010 diff hist +50‎ CGI Build Process ‎ Changed js/public push instructions to js-public; removed instruction to run TrackCheck from the /scratch directory.

28 July 2010

• 02:5002:50, 28 July 2010 diff hist +102‎ Installing git ‎ added link to Git Community Book

23 July 2010

• 03:1103:11, 23 July 2010 diff hist −23‎ Ensembl QA ‎ Removing Category:Browser_QA (it's now in Category:Browser QA tracks)
• 03:1103:11, 23 July 2010 diff hist −23‎ SNP Track QA ‎ Removing Category:Browser_QA (it's now in Category:Browser QA tracks)
• 03:0903:09, 23 July 2010 diff hist −23‎ Conservation Track QA ‎ Removing Category:Browser_QA (it's now in Category:Browser QA tracks)
• 03:0903:09, 23 July 2010 diff hist −23‎ Chains and Nets QA ‎ Removing Category:Browser_QA (it's now in Category:Browser QA tracks)
• 03:0703:07, 23 July 2010 diff hist −23‎ QAing UCSC Genes ‎ Removing Category:Browser_QA (it's now in Category:Browser QA tracks)

22 July 2010

• 20:5920:59, 22 July 2010 diff hist +51‎ New track checklist ‎ add alphabetical ordering to references

17 July 2010

• 03:5503:55, 17 July 2010 diff hist +1,289‎ New track checklist ‎ Filled in missing information, added to joinerCheck section, lots of clarifications and cleanup
• 03:0303:03, 17 July 2010 diff hist +2,399‎ N All.joiner problem ‎ all.joiner problem to be aware of

16 July 2010

• 19:3819:38, 16 July 2010 diff hist +65‎ New track checklist ‎No edit summary
• 19:3619:36, 16 July 2010 diff hist −489‎ New track checklist ‎ browser qa group edit
• 19:0519:05, 16 July 2010 diff hist −351‎ New track checklist ‎No edit summary
• 18:5618:56, 16 July 2010 diff hist +423‎ New track checklist ‎No edit summary
• 18:4318:43, 16 July 2010 diff hist +256‎ New track checklist ‎No edit summary
• 18:3918:39, 16 July 2010 diff hist +3‎ New track checklist ‎No edit summary
• 18:3618:36, 16 July 2010 diff hist +178‎ New track checklist ‎No edit summary
• 18:2418:24, 16 July 2010 diff hist +335‎ New track checklist ‎No edit summary
• 18:1218:12, 16 July 2010 diff hist +212‎ New track checklist ‎No edit summary

14 July 2010

• 04:0604:06, 14 July 2010 diff hist +25‎ New track checklist ‎ added browser-qa category
• 03:4003:40, 14 July 2010 diff hist +199‎ New track checklist ‎ rearranged table checks and added checkTableCoords
• 03:3003:30, 14 July 2010 diff hist +479‎ New track checklist ‎ added checkHgFindSpec
• 03:1803:18, 14 July 2010 diff hist +20‎ New track checklist ‎ changed 'make strict' to 'make beta'
• 03:0403:04, 14 July 2010 diff hist −380‎ New track checklist ‎ removed irrelevant help pages section
• 02:5602:56, 14 July 2010 diff hist +499‎ New track checklist ‎ formatting
• 02:4702:47, 14 July 2010 diff hist +8,174‎ N New track checklist ‎ copied and pasted from http://genecats.cse.ucsc.edu/qa/test-protocols/checklist.html
• 02:3802:38, 14 July 2010 diff hist +25‎ SNP Track QA ‎ changed checkOffend.csh to checkTableCoords and added a category
• 02:0302:03, 14 July 2010 diff hist +353‎ SNP Track QA ‎ added checkHgFindSpec

24 June 2010

• 22:4922:49, 24 June 2010 diff hist +1,877‎ N CVS to Git Migration ‎ A start: most of this text copied and pasted from emails from galt, hiram, and chin
• 20:1120:11, 24 June 2010 diff hist +5‎ Static Page Protocol ‎ fixed htdocsExtras directory references

18 June 2010

• 23:2223:22, 18 June 2010 diff hist −1‎ m Internet browser testing ‎ typo

17 June 2010

• 03:2903:29, 17 June 2010 diff hist 0‎ CGI Build Process ‎ changed hgwbeta-public's js directory to its new location (now it follows the same structure as individuals' sandboxes on hgwdev)

16 June 2010

• 06:3006:30, 16 June 2010 diff hist +1‎ m Getting Started With Git ‎ typo

12 June 2010

• 00:3500:35, 12 June 2010 diff hist +63‎ CGI Testing ‎No edit summary

9 June 2010

• 01:3701:37, 9 June 2010 diff hist +227‎ CGI Testing ‎ added some table browser instructions

8 June 2010

• 08:1608:16, 8 June 2010 diff hist +2‎ m Static Page Protocol ‎No edit summary

29 May 2010

• 04:1804:18, 29 May 2010 diff hist +172‎ Frequently asked mailing list questions ‎ added link to seattleSeqAnnotation

27 May 2010

• 19:4819:48, 27 May 2010 diff hist +230‎ CGI Build Process ‎ added notes about keeping javascript directories in sync on hgwbeta-public and the RR

13 May 2010

• 20:4820:48, 13 May 2010 diff hist −33‎ New Release Checklist ‎ hgcentral is pushed automatically now when you run buildHgCentralSql.csh

3 May 2010

• 20:3620:36, 3 May 2010 diff hist +159‎ Frequently asked mailing list questions ‎ Added answer about sharing custom tracks w/ sessions vs. constructing URLs, plus using big* files

28 April 2010

• 17:5817:58, 28 April 2010 diff hist +24‎ m Make your own virtual space ‎ added browser qa category

27 April 2010

• 19:3319:33, 27 April 2010 diff hist −152‎ Static content for new assemblies ‎ both 'make' and a 'make alpha' puts the description.html page in /gbdb!
• 19:0719:07, 27 April 2010 diff hist +610‎ Static content for new assemblies ‎ clarified where things are pushed to/from, plus minor edits

15 March 2010

• 23:0823:08, 15 March 2010 diff hist +46‎ CGI Build Process ‎No edit summary

10 March 2010

• 21:4421:44, 10 March 2010 diff hist −46‎ ThreeStateTrackDb ‎ clarified migration plan details (I hope)

9 March 2010

• 00:1800:18, 9 March 2010 diff hist +62‎ m ThreeStateTrackDb ‎ took alpha,beta,public off of the include statement in it's totally released state

5 March 2010

• 19:4319:43, 5 March 2010 diff hist +52‎ CGI Testing ‎ added a link to genePred format
• 19:4119:41, 5 March 2010 diff hist +96‎ CGI Testing ‎ added to hgPal
• 19:3319:33, 5 March 2010 diff hist +257‎ CGI Testing ‎No edit summary

25 February 2010

• 23:5423:54, 25 February 2010 diff hist +10‎ m ThreeStateTrackDb ‎ made sentence read easier
• 23:4123:41, 25 February 2010 diff hist +4‎ m ThreeStateTrackDb ‎ changed a quote to a bold

13 February 2010

• 01:0501:05, 13 February 2010 diff hist −2‎ m ThreeStateTrackDb ‎No edit summary
• 01:0301:03, 13 February 2010 diff hist +46‎ ThreeStateTrackDb ‎No edit summary

12 February 2010

• 22:1222:12, 12 February 2010 diff hist +685‎ ThreeStateTrackDb ‎ Changed large composite section from using sequential versions to a system with only 2-3 file names total.
• 19:3719:37, 12 February 2010 diff hist 0‎ m Training new Browser Staff ‎No edit summary
• 00:2100:21, 12 February 2010 diff hist +14‎ Training new Browser Staff ‎No edit summary

11 February 2010

• 23:5623:56, 11 February 2010 diff hist +63‎ Training new Browser Staff ‎No edit summary
• 23:4623:46, 11 February 2010 diff hist +43‎ Training new Browser Staff ‎No edit summary
• 20:2720:27, 11 February 2010 diff hist −1‎ ThreeStateTrackDb ‎ tiny typo
• 02:4302:43, 11 February 2010 diff hist −22‎ ThreeStateTrackDb ‎No edit summary
• 02:3802:38, 11 February 2010 diff hist +2‎ m ThreeStateTrackDb ‎No edit summary
• 02:1102:11, 11 February 2010 diff hist +1‎ m ThreeStateTrackDb ‎ formatted better
• 00:5000:50, 11 February 2010 diff hist +62‎ Training new Browser Staff ‎No edit summary
• 00:4500:45, 11 February 2010 diff hist +31‎ Training new Browser Staff ‎No edit summary
• 00:3300:33, 11 February 2010 diff hist +56‎ Training new Browser Staff ‎No edit summary
• 00:3000:30, 11 February 2010 diff hist +86‎ Training new Browser Staff ‎No edit summary

24 November 2009

• 21:0021:00, 24 November 2009 diff hist +132‎ Conservation Track QA ‎ Added location of "real" assembly list

21 November 2009

• 01:2101:21, 21 November 2009 diff hist +119‎ Conservation Track QA ‎ added note about conserved elements track

23 September 2009

• 23:4723:47, 23 September 2009 diff hist +31‎ Conservation Track QA ‎ Added note to zoom in to <50,000 bases to find blue and green bars.

21 September 2009

• 21:3521:35, 21 September 2009 diff hist +73‎ Genome Browser Software Features ‎No edit summary

9 September 2009

• 21:0221:02, 9 September 2009 diff hist 0‎ CGI Build Process ‎No edit summary

21 August 2009

• 19:2119:21, 21 August 2009 diff hist +47‎ MySQL migration: 4.x to 5.0 ‎No edit summary

4 August 2009

• 21:2321:23, 4 August 2009 diff hist −49‎ ENCODE QA ‎No edit summary

30 July 2009

• 22:3122:31, 30 July 2009 diff hist +7‎ m ENCODE QA ‎No edit summary

27 July 2009

• 05:1205:12, 27 July 2009 diff hist −13‎ m UCSCGeneAnnotation:hg18-253 ‎No edit summary

10 June 2009

• 22:0622:06, 10 June 2009 diff hist +129‎ CGI Build Process ‎No edit summary

14 May 2009

• 17:3217:32, 14 May 2009 diff hist +75‎ Genome Browser Software Features ‎No edit summary

20 April 2009

• 18:0918:09, 20 April 2009 diff hist +2‎ CGI Build Process ‎ Changed the TrackCheck props file specification from hgwbeta --> hgsqlbeta

13 March 2009

• 19:2419:24, 13 March 2009 diff hist +86‎ Genome Browser Software Features ‎No edit summary

2 February 2009

• 23:2123:21, 2 February 2009 diff hist +179‎ Frequently asked mailing list questions ‎No edit summary