Uploads by Hiram
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This special page shows all uploaded files.
Date | Name | Thumbnail | Size | Description | Versions |
---|---|---|---|---|---|
20:13, 22 March 2011 | 29mammalsConstrainedElements omega branchLength.bw (file) | 54.38 MB | gwUploadFile upload | 1 | |
20:43, 21 March 2011 | 29mammalsConstraintStructure.bw (file) | 219 KB | test upload | 1 | |
20:42, 21 March 2011 | 29mammalsMotifInstances.bb (file) | 38.25 MB | test upload | 1 | |
20:41, 21 March 2011 | 29mammalsExaptedElements.bb (file) | 3.51 MB | test upload | 1 | |
20:36, 21 March 2011 | 29mammals2xHARs.bb (file) | 45 KB | test upload | 1 | |
20:33, 21 March 2011 | 29mammals2xPARs.bb (file) | 45 KB | test upload | 1 | |
20:31, 21 March 2011 | 29mammalsNovelExons.bb (file) | 411 KB | test upload | 1 | |
23:44, 25 January 2011 | ConstructLiftFile pl.txt (file) | 1 KB | Given a partition list from partitionSequence.pl and a chrom.sizes file, this perl script will construct a lift file to be used to lift psl query and target results from those partitions after a lastz alignment. | 1 | |
17:28, 6 January 2011 | BME230 Winter 2011.ppt (file) | 6.25 MB | Hiram Clawson, BME 230 lecture, 06 January 2011, introduction to the genome browser and programming with the kent source tree. | 1 | |
18:04, 15 September 2010 | Knetfile hooks.0.1.7.patch (file) | 13 KB | Patch to samtools-0.1.7 to enable UCSC network functions and caching for remote BAM file access | 1 | |
18:03, 15 September 2010 | Knetfile hooks.0.1.8.patch (file) | 16 KB | Patch to samtools-0.1.8 to enable UCSC network functions and caching for remote BAM file access | 1 | |
20:57, 16 June 2010 | Ce6Ws190AltSpliceCustomTrack.txt (file) | 172 bytes | the custom track reference track line for ce6/WS190 alternative splice track | 1 | |
20:55, 16 June 2010 | Ce6.altSplice.bb (file) | 213 KB | Alternate splice sites lifted from WS170 track to WS190 coordinates from IntronWS120 file: altsplice.EX.html) | 1 | |
20:48, 16 June 2010 | Ce2Ws120AltSpliceCustomTrack.txt (file) | 172 bytes | adding db=ce2 definition | 3 | |
20:47, 16 June 2010 | Ce4Ws140AltSpliceCustomTrack.txt (file) | 194 bytes | adding db=ce4 definition | 2 | |
20:44, 16 June 2010 | Ce4.altSplice.bb (file) | 213 KB | Alternate splice sites lifted from WS120 track to WS170 coordinates from IntronWS120 file: altsplice.EX.html) | 1 | |
20:39, 16 June 2010 | Ce2.altSplice.bb (file) | 212 KB | Alternate splice sites from IntronWS120 file: altsplice.EX.html | 4 | |
18:31, 19 March 2010 | Hg17.customText.UCSC GGM SpecificCGIs.txt (file) | 257 bytes | customText track definition for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 | |
18:30, 19 March 2010 | Hg17.customText.UCSC GGM SensitiveCGIs.txt (file) | 296 bytes | customText track definition for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 | |
18:29, 19 March 2010 | Hg17.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | 272 bytes | customText track definition for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 | |
18:28, 19 March 2010 | Hg17.customText.UCSC GGM BalancedCGIs.txt (file) | 257 bytes | customText track definition for hg17 custom track: CGIs (balanced) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 | |
18:27, 19 March 2010 | Hg17.customText.UCSC GGM All.txt (file) | 1 KB | customText track definition for all five data sets UCSC GGM CpGs | 1 | |
18:25, 19 March 2010 | Hg17.UCSC GGM SpecificCGIs.bb (file) | 178 KB | bigBed data for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 | |
18:23, 19 March 2010 | Hg17.UCSC GGM SensitiveCGIs.bb (file) | 686 KB | bigBed data for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 | |
18:22, 19 March 2010 | Hg17.UCSC GGM OptimizedScore.bb (file) | 1.99 MB | bigBed data for hg17 custom track: Optimized score - Optimized score (high scores correspond to bona fide CpG islands | 1 | |
18:21, 19 March 2010 | Hg17.UCSC GGM CombinedEpigeneticScore.bb (file) | 2.02 MB | bigBed data for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 | |
18:19, 19 March 2010 | Hg17.UCSC GGM BalancedCGIs.bb (file) | 389 KB | bigBed data for hg17 custom track: CGIs (balanced) Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 | |
18:07, 19 March 2010 | Hg18.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | 272 bytes | customText for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 | |
18:06, 19 March 2010 | Hg18.customText.UCSC GGM SensitiveCGIs.txt (file) | 259 bytes | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 | |
18:05, 19 March 2010 | Hg18.customText.UCSC GGM SpecificCGIs.txt (file) | 257 bytes | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 | |
18:00, 19 March 2010 | Hg18.customText.UCSC GGM BalancedCGIs.txt (file) | 257 bytes | customText track definition for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 | |
17:54, 19 March 2010 | Hg18.customText.UCSC GGM All.txt (file) | 1 KB | customText track statements to load all five UCSC_GGM CpG custom tracks | 2 | |
17:30, 19 March 2010 | Hg18.UCSC GGM SpecificCGIs.bb (file) | 178 KB | bigBed data for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 | |
17:30, 19 March 2010 | Hg18.UCSC GGM SensitiveCGIs.bb (file) | 686 KB | bigBed data for custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 | |
17:28, 19 March 2010 | Hg18.UCSC GGM OptimizedScore.bb (file) | 1.99 MB | bigBed data for hg18 custom track: Optimized score (high scores correspond to bona fide CpG islands) | 1 | |
17:28, 19 March 2010 | Hg18.UCSC GGM CombinedEpigeneticScore.bb (file) | 2.02 MB | bigBed data for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 | |
17:27, 19 March 2010 | Hg18.UCSC GGM BalancedCGIs.bb (file) | 389 KB | bigBed data for custom track of Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 | |
22:38, 5 January 2010 | BME230 Winter 2010.ppt (file) | 6.33 MB | Hiram Clawson, BME 230 lecture, 05,07 January 2009, introduction to the genome browser and programming with the kent source tree. | 1 | |
19:25, 1 December 2009 | PhastCons46wayPrimates.histogram.png (file) | 5 KB | 46-way conservation track on human genome browser hg19. phastCons histogram data for the primates subset | 1 | |
19:24, 1 December 2009 | PhastCons46wayPlacental.histogram.png (file) | 5 KB | 46-way conservation track on human genome browser hg19. phastCons histogram data for all placental mammal subset | 1 | |
19:24, 1 December 2009 | PhastCons46way.histogram.png (file) | 5 KB | 46-way conservation track on human genome browser hg19. phastCons histogram data for all 46 vertebrates | 1 | |
19:37, 30 November 2009 | PhyloP46wayPrimates.histogram.png (file) | 6 KB | 46-way conservation track on human genome browser hg19. phyloP histogram data for all primates subset | 1 | |
19:36, 30 November 2009 | PhyloP46wayPlacental.histogram.png (file) | 6 KB | 46-way conservation track on human genome browser hg19. phyloP histogram data for all placental mammal subset | 1 | |
19:35, 30 November 2009 | PhyloP46way.histogram.png (file) | 6 KB | 46-way conservation track on human genome browser hg19. phyloP histogram data for all 46 vertebrates | 1 | |
22:14, 14 October 2009 | MonsatoIntroduction Oct2009.pdf (file) | 8.37 MB | Montsanto Introduction, Genecats 14 Oct 2009 | 1 | |
20:46, 14 October 2009 | Genecats 2009 10 14.pptx (file) | 86 KB | Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson | 1 | |
20:46, 14 October 2009 | Genecats 2009 10 14.ppt (file) | 141 KB | Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson | 1 | |
22:28, 17 September 2009 | MultAlign.jpg (file) | 14 KB | Example tool tip pop up image | 1 | |
18:46, 29 July 2009 | SvnForGb.pdf (file) | 171 KB | Mark's presentation to 2009-07-29 genecats, review of SVN subversion and how it could replace CVS | 1 | |
18:27, 25 March 2009 | Teal Day 05.jpg (file) | 1.02 MB | Trying to recover a mysterious bogus file directory link | 1 |