Uploads by Hiram
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 18:46, 15 September 2022 | Hg38.grcIncidentDb.bb (file) |  |
282 KB | gwUploadFile upload | 359 |
| 18:50, 10 August 2006 | StarTrekTOSTransporter.wav (file) | |
223 KB | Testing wav file upload. Star Trek, The Original Series, Transporter sound. 10 seconds | 1 |
| 20:43, 21 March 2011 | 29mammalsConstraintStructure.bw (file) | |
219 KB | test upload | 1 |
| 20:55, 16 June 2010 | Ce6.altSplice.bb (file) | |
213 KB | Alternate splice sites lifted from WS170 track to WS190 coordinates from IntronWS120 file: altsplice.EX.html) | 1 |
| 20:44, 16 June 2010 | Ce4.altSplice.bb (file) | |
213 KB | Alternate splice sites lifted from WS120 track to WS170 coordinates from IntronWS120 file: altsplice.EX.html) | 1 |
| 20:39, 16 June 2010 | Ce2.altSplice.bb (file) | |
212 KB | Alternate splice sites from IntronWS120 file: altsplice.EX.html | 4 |
| 16:33, 28 June 2022 | DanRer11.grcIncidentDb.bb (file) | |
202 KB | gwUploadFile upload | 17 |
| 16:43, 27 April 2012 | Hg19.ncbiIncidentDb.bb (file) | |
179 KB | gwUploadFile upload | 67 |
| 17:30, 19 March 2010 | Hg18.UCSC GGM SpecificCGIs.bb (file) | |
178 KB | bigBed data for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:25, 19 March 2010 | Hg17.UCSC GGM SpecificCGIs.bb (file) | |
178 KB | bigBed data for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:46, 29 July 2009 | SvnForGb.pdf (file) |  |
171 KB | Mark's presentation to 2009-07-29 genecats, review of SVN subversion and how it could replace CVS | 1 |
| 16:44, 27 April 2012 | DanRer7.ncbiIncidentDb.bb (file) | |
168 KB | gwUploadFile upload | 27 |
| 23:13, 27 April 2018 | SizeVsTime.png (file) |  |
156 KB | lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days | 1 |
| 20:46, 14 October 2009 | Genecats 2009 10 14.ppt (file) | |
141 KB | Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson | 1 |
| 16:43, 27 April 2012 | Mm9.ncbiIncidentDb.bb (file) | |
136 KB | gwUploadFile upload | 80 |
| 16:33, 28 June 2022 | DanRer10.grcIncidentDb.bb (file) | |
126 KB | gwUploadFile upload | 127 |
| 23:29, 18 September 2007 | Hg18KnownGenesSmallIntronsExonsCt.txt.gz (file) | |
122 KB | Human Hg18 genome browser custom track to indicate unusually small introns and exons in the Known Genes version 3 procedure. These small exons and introns are used to maintain frame shifts in mRNA evidence that may be translation skipping or post translat | 1 |
| 18:17, 2 June 2017 | Btrfs filesystem readWrite performance.png (file) |  |
120 KB | read/write performance test results for 'btrfs' filesystem | 1 |
| 06:14, 13 July 2008 | SoftwareSermon2002 Jim Kent.ppt (file) | |
113 KB | Genecats October 2002 - "Software Sermon" - software development philosophy and guidelines, Jim Kent. | 1 |
| 22:10, 28 September 2017 | GenbankPrimates.jpg (file) |  |
113 KB | primate phylogenetic tree from genbank taxIds Given a set of taxon IDs, utilizing [http://phylot.biobyte.de/ phylot.biobyte.de] to derive this phylogenetic tree. NOTE: not necessarily completely accurate. Image drawn by [http://itol.embl.de/ itol.embl. | 1 |
| 16:33, 28 June 2022 | DanRer7.grcIncidentDb.bb (file) | |
111 KB | gwUploadFile upload | 336 |
| 22:45, 31 May 2017 | Ext4 fs readWrite performance.png (file) |  |
106 KB | writing over 7 million files into one directory to see how performance degrades. | 1 |
| 16:33, 28 June 2022 | Hg19.grcIncidentDb.bb (file) | |
106 KB | gwUploadFile upload | 867 |
| 22:47, 31 May 2017 | Tmpfs filesystem readWrite performance.png (file) |  |
101 KB | testing read/write performance into a /dev/shm directory overloaded with up to 7 million files | 1 |
| 16:33, 28 June 2022 | Mm10.grcIncidentDb.bb (file) | |
101 KB | gwUploadFile upload | 289 |
| 22:48, 31 May 2017 | Xfs filesystem readWrite performance.png (file) |  |
97 KB | testing read/write performance on xfs filesystem in a directory overloaded with up to 7 million files | 1 |
| 20:46, 14 October 2009 | Genecats 2009 10 14.pptx (file) | |
86 KB | Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson | 1 |
| 16:33, 28 June 2022 | Mm9.grcIncidentDb.bb (file) | |
74 KB | gwUploadFile upload | 282 |
| 19:02, 16 December 2008 | Kent parasolArchitecture.ppt (file) | |
60 KB | Jim Kent genecats presentation June 2008, Parasol super computer job management system review | 1 |
| 17:09, 28 April 2018 | LastzProcessingTimeHistogram.png (file) |  |
53 KB | lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c... | 1 |
| 17:32, 16 December 2008 | Baertsch-code-talk.ppt (file) | |
50 KB | BME230 lecture by Robert Baertsch, Winter 2008, 10 January 2008, genome browser introduction and kent source tree preview | 1 |
| 20:36, 21 March 2011 | 29mammals2xHARs.bb (file) | |
45 KB | test upload | 1 |
| 06:43, 13 July 2008 | CompBioOct2000 Jim Kent.ppt (file) | |
45 KB | Description of the genome browser software architecture, the early days. Jim Kent | 1 |
| 20:33, 21 March 2011 | 29mammals2xPARs.bb (file) | |
45 KB | test upload | 1 |
| 18:57, 16 December 2008 | Kent allJoiner.ppt (file) | |
41 KB | Jim Kent, genecats 05 July 2008 - the all.joiner file which describes the database schema relationships for the UCSC genome browser | 1 |
| 17:33, 30 January 2019 | GalGal5.grcIncidentDb.bb (file) | |
27 KB | gwUploadFile upload | 7 |
| 17:24, 3 September 2019 | GalGal6.grcIncidentDb.bb (file) | |
19 KB | gwUploadFile upload | 1 |
| 18:30, 28 April 2006 | PhenSort.gif (file) |  |
16 KB | Example phenotype | 1 |
| 18:03, 15 September 2010 | Knetfile hooks.0.1.8.patch (file) | |
16 KB | Patch to samtools-0.1.8 to enable UCSC network functions and caching for remote BAM file access | 1 |
| 22:28, 17 September 2009 | MultAlign.jpg (file) |  |
14 KB | Example tool tip pop up image | 1 |
| 18:04, 15 September 2010 | Knetfile hooks.0.1.7.patch (file) | |
13 KB | Patch to samtools-0.1.7 to enable UCSC network functions and caching for remote BAM file access | 1 |
| 17:37, 10 August 2006 | SmedleyCat.jpg (file) |  |
11 KB | Smedley the cat in the early days. Photo by Hiram Clawson, 1995. | 1 |
| 21:41, 17 March 2008 | TestOOPresent.ppt (file) | |
11 KB | Testing ppt upload | 1 |
| 21:40, 7 December 2007 | UserCount.png (file) |  |
9 KB | Genomewiki User Count graph | 1 |
| 21:53, 7 December 2007 | PageCount.png (file) |  |
8 KB | Genomewiki page count graph | 1 |
| 23:21, 10 October 2007 | Mm9 30way.gif (file) |  |
8 KB | Attempting to reinitialize this image to get it correct | 1 |
| 17:35, 26 September 2018 | OpenStackParaHubSetup.sh.txt (file) |  |
8 KB | reorganize NFS setups, parameterize the installation directory | 5 |
| 16:47, 18 September 2007 | Hg17 hg18 exonsTo300.png (file) |  |
6 KB | Human hg17 and hg18 exon size histogram, to a size of 300 nucleotides | 2 |
| 19:35, 30 November 2009 | PhyloP46way.histogram.png (file) |  |
6 KB | 46-way conservation track on human genome browser hg19. phyloP histogram data for all 46 vertebrates | 1 |
| 02:56, 29 June 2012 | FireCracker10KElevationProfile.png (file) |  |
6 KB | Elevation profile for the Santa Cruz FireCracker 10K run, July 4th. Corrected the GPS readings with Google Earth information and known ground truth. | 2 |
